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Rates of Vertical Land Motion (VLM) on Tutuila (American Samoa) and Upolu (Samoa) (from 3 December 2015 to 16 April 2020 and from 28 April 2020 to 27 November 2023)
<p>Dataset associated with the resubmitted manuscript under revision "Spatiotemporal Patterns of Subsidence and Sea Level Rise in the Samoan Islands Nearly 15 Years after the 2009 Samoa-Tonga Earthquake" by S. A. Huang, J. M. Sauber, S.-C. Han, R. Ray, and E. J. Fielding.</p> <p>Average VLM rates are provided for Tutuila (American Samoa) and Upolu (Samoa) over two subsets:</p> <ol> <li>3 December 2015 to 16 April 2020</li> <li>28 April 2020 to 27 November 2023</li> </ol> <p>VLM rates were derived using the PS-InSAR technique described in the publication at https://doi.org/10.1109/LGRS.2024.3358737. </p> <p>The following files are included here:</p> <ul> <li>plot_ps_data_tutuila_upolu.m: Matlab script to visualize the data included in all the *.mat files (Figures 4 and 5 and the histograms in 8c and 9c without annotations). Requires Computer Vision Toolbox.</li> </ul> <p>Upolu:</p> <ul> <li>upolu_ampl.mat: Amplitude backscatter from Upolu averaged from all scenes, multilooked for speckle reduction and resampled to the dataset size. Normalized to 1.</li> <li>latvals.mat: Latitude vector associated with both Upolu datasets.</li> <li>lonvals.mat: Longitude vector associated with both Upolu datasets.</li> <li>upolu_15-20_vlm.mat: Computed VLM rates across Upolu for the 2015-2020 time period [mm/yr]. All non-PS have an "NaN" value.</li> <li>upolu_15-20_vlm_uncert.mat: Uncertainty of VLM across Upolu for the 2015-2020 time period [mm/yr]. All non-PS have an "NaN" value.</li> <li>upolu_20-23_vlm.mat: Computed VLM rates across Upolu for the 2020-2023 time period [mm/yr]. All non-PS have an "NaN" value.</li> <li>upolu_20-23_vlm_uncert.mat: Uncertainty of VLM across Upolu for the 2020-2023 time period [mm/yr]. All non-PS have an "NaN" value.</li> </ul> <p>Tutuila: </p> <ul> <li>tutuila_ampl.mat: Amplitude backscatter from Tutuila averaged from all scenes, multilooked for speckle reduction and resampled to the dataset size. Normalized to 1.</li> <li>tutuila_latvals.mat: Latitude vector associated with both Tutuila datasets.</li> <li>tutuila_lonvals.mat: Longitude vector associated with both Tutuila datasets.</li> <li>tutuila_15-20_vlm.mat: Computed VLM rates across Tutuila Island for the 2015-2020 time period [mm/yr]. All non-PS have an "NaN" value.</li> <li>tutuila_15-20_vlm_uncert.mat: Uncertainty of VLM across Tutuila Island for the 2015-2020 time period[mm/yr]. All non-PS have an "NaN" value.</li> <li>tutuila_20-23_vlm.mat: Computed VLM rates across Tutuila Island for the 2020-2023 time period [mm/yr]. All non-PS have an "NaN" value.</li> <li>tutuila_20-23_vlm_uncert.mat: Uncertainty of VLM across Tutuila Island for the 2020-2023 time period[mm/yr]. All non-PS have an "NaN" value.</li> </ul>
Data from: Vertical sexual habitat segregation in a wintering migratory songbird
<p>Sexual habitat segregation during the wintering period is a widespread phenomenon and has important implications for the ecology and conservation of migratory birds. We studied Black-and-white Warblers (<i>Mniotilta varia) </i>wintering in second-growth scrub and old-growth mangrove forest in Jamaica to quantify sexual habitat segregation and explore whether patterns of habitat occupation have consequences on physical condition. We then used this information along with a body size analysis and simulated territorial intrusions to assess whether behavioral dominance or habitat specialization was responsible for habitat segregation. Based on standardized capture data, we found that females were more abundant than males in both scrub and mangrove forests. Foraging observations, however, suggested vertical segregation within each habitat, with females foraging primarily near the ground and males in the mid-canopy and canopy, indicating that our sex ratio estimates may be biased. Using 2 measures of body condition, we show that males were in better body condition than females, regardless of habitat. We found that males were on average slightly larger than females, and home range analysis and simulated territorial intrusions indicated that males were more territorial than females. We argue that the observed vertical sexual habitat segregation is likely caused by behavioral dominance rather than habitat specialization. Winter body condition is known to carry-over to affect migration timing, reproductive success, and annual survival in other songbirds, and therefore sexual habitat segregation may have important implications for year-round population dynamics in Black-and-white Warblers.</p>
Vertical profiles of 3D cluster properties
<p>The two zip files contain the properties of the 3D clusters used in the submission version of the Paper "Size-dependence of surface-rooted three-dimensional convective objects in continental shallow cumulus simulations". The paper was submitted to JAMES in May 2021.</p> <p>When unzipped, the data is stored in python panda dataframes in pkl files. Warning! Unzipping the files increases the data size by a factor of 20.</p> <p>The two python scripts contain the functions used to segment the 3D snapshots into individual objects. The most interesting things are in proc_watershed, cusize_functions is just a collection of mostly abandoned functions. The functions in proc_watershed are reasonably well commented.</p>
The Prototype of a Fast Vertical Ionosonde Based on Modern SDR Devices - paper dataset
<p>Dataset for paper "The Prototype of a Fast Vertical Ionosonde Based on Modern SDR Devices"</p> <p>Content:</p> <p>1. SDRLab122-16_firmwares.tbz - RED PITAYA SDRLAB 122-16 firmwares for AM & PSK ionosonde's TX part with 5 ms pulse period.</p> <p>2. ionosonde_gr_oot.tbz - archive with git-repo of GNU Radio OOT Trigger Module (the part of the ionosonde's receiving part).</p> <p>3. ion-fast_receiver.tbz - archive with programs (gnu radio companion flow graphs, python & bash scripts) for plotting ionograms (the part of the ionosonde's receiving part)</p> <p>4. npy_data.tar - archive with examples of received ionograms in numpy format.</p> <p>5. png_ionogram_file_examples.tbz - archive with examples of received ionograms in png-image format.</p> <p>6. raw_iq_data_complex64_am.iq - raw iq data example (sample_rate = 10e6, central freq = 5500000 Hz, data_type= complex64) AM modulation with 5 ms pulse period.</p> <p>7. raw_iq_data_complex64_psk.iq - raw iq data example (sample_rate = 10e6, central freq = 5500000 Hz, data_type= complex64) PSK modulation with 5 ms pulse period.</p> <p>8. AM-Large_antenna.mp4 - video demonstration of the ionosonde operation using a large diagnostic antenna in the amplitude manipulation mode</p> <p>9. AM-CADI_antenna.mp4 - video demonstration of the ionosonde operation using the CADI's antenna in the amplitude manipulation mode.</p> <p>10. PSK_CADI_antenna.mp4 - video demonstration of the ionosonde operation using the CADI's antenna in the phase manipulation mode.</p> <p>11. AM-Chirp_ionosonde_antenna.mp4 - video demonstration of the ionosonde operation using the CHIRP ionospnde's inclined antenna in the amplitude manipulation mode.</p>
FIGURE. In situ photos of Paphiopedilum charlesworthii var. lannaense. A. limestone mountain at 1,100–1,200 m elevation, B. P. charlesworthii var. lannaense living on vertical cliffs of limestone, C. P. charlesworthii var. lannaense plant, D. flowering plant with flower bud, E., F. flowering plant (flower color was faded because these photos were taken toward the end of flowering period) (photo. By S. Somboonphon) in Paphiopedilum charlesworthii var. lannaense, a new slipper orchid from Northern Thailand identified by morphological and AFLP analyses
FIGURE. In situ photos of Paphiopedilum charlesworthii var. lannaense. A. limestone mountain at 1,100–1,200 m elevation, B. P. charlesworthii var. lannaense living on vertical cliffs of limestone, C. P. charlesworthii var. lannaense plant, D. flowering plant with flower bud, E., F. flowering plant (flower color was faded because these photos were taken toward the end of flowering period) (photo. By S. Somboonphon)
Stronger Vertical Wind Shear Leads to Earlier Secondary Eyewall Formation
<p>file1(s100_azimuthal_uvrd.d) : S100's u、v wind and reflectivity </p> <p>fie2(s100_chi_vr.d): S100's the irrotational component of the radial velocity</p> <p>file3(s125_azimuthal_saturation_deficit.d): S125's column-integrated saturation deficit </p>
FIGURE. Puccinia klugkistiana on Ligustrum obtusifolium (A–F, N, O, P) and Cleistogenes hackelii (G–N). A. Plant hedges producing spermogonia and aecia in the field. B. Spermogonia on the upper leaf surface. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the lower leaf surface. E. Vertical section of a spermogonium. F. Aeciospores. G. Uredinia on the leaf surface. H. Vertical section of a uredinium. I. Urediniospores. J, K. Telia on the leaf surface. L. Teliospores. M. Urediniospore observed under SEM. N. Vertical section of an uredinium observed under SEM. O. Aecium observed under SEM. P. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C = 100 μm, E, F = 20 μm, H, I = 30 μm, M = 5 μm, P = 10 μm, H, L, O = 40 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia klugkistiana on Ligustrum obtusifolium (A–F, N, O, P) and Cleistogenes hackelii (G–N). A. Plant hedges producing spermogonia and aecia in the field. B. Spermogonia on the upper leaf surface. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the lower leaf surface. E. Vertical section of a spermogonium. F. Aeciospores. G. Uredinia on the leaf surface. H. Vertical section of a uredinium. I. Urediniospores. J, K. Telia on the leaf surface. L. Teliospores. M. Urediniospore observed under SEM. N. Vertical section of an uredinium observed under SEM. O. Aecium observed under SEM. P. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C = 100 μm, E, F = 20 μm, H, I = 30 μm, M = 5 μm, P = 10 μm, H, L, O = 40 μm.
FIGURE. Puccinia cerinthes-agropyrina on Clematis sp. A. Plants producing spermogonia and aecia on the leaves and stems in the field. B. Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aecia on the stem. E. Aeciospores. F. Aeciospore with verrucose surface observed under SEM. G. Aecium observed under SEM. H. Vertical section of an aecium. Scale bars: C = 20 μm, E, H = 30 μm, F = 5 μm, G = 100 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia cerinthes-agropyrina on Clematis sp. A. Plants producing spermogonia and aecia on the leaves and stems in the field. B. Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aecia on the stem. E. Aeciospores. F. Aeciospore with verrucose surface observed under SEM. G. Aecium observed under SEM. H. Vertical section of an aecium. Scale bars: C = 20 μm, E, H = 30 μm, F = 5 μm, G = 100 μm.
FIGURE. Puccinia phragmitis on Rumex patientia (A–E, I, K) and Phragmites australis (F–H, J). A, B Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aeciospores. F, G. Telia on the leaf surface. H. Teliospores. I. Aecium observed under SEM. J. Vertical section of a telium. K. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C, D, E = 30 μm, H = 10 μm, I = 100 μm, J = 20 μm, K = 3 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia phragmitis on Rumex patientia (A–E, I, K) and Phragmites australis (F–H, J). A, B Spermogonia and aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aeciospores. F, G. Telia on the leaf surface. H. Teliospores. I. Aecium observed under SEM. J. Vertical section of a telium. K. Aeciospores with various sizes of verrucae on the surface observed under SEM. Scale bars: C, D, E = 30 μm, H = 10 μm, I = 100 μm, J = 20 μm, K = 3 μm.
FIGURE. Puccinia elymi on species of Poaceae. A, B. Telia on the leaf surface. C. Teliospores. D. Vertical section of a telium. Scale bars: C = 30 μm, D = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia elymi on species of Poaceae. A, B. Telia on the leaf surface. C. Teliospores. D. Vertical section of a telium. Scale bars: C = 30 μm, D = 20 μm.
FIGURE. Puccinia miscanthi on Plantago asiatica (A–H) and Miscanthus sacchariflorus (I–Q). A. Plants producing spermogonia and aecia on the leaf surface. B. Spermogonia on the leaf surface. C. Aecia on lower leaf surface. D. Vertical section of a spermogonium. E. Aeciospores. F. Vertical section of an aecium observed under SEM. G. Aeciospores with verrucose surface observed by SEM. H. Vertical section of an aecium surrounded by peridia. I. Plants producing uredinia on the leaf surface in the field. J. Vertical section of an uredinium with paraphyses. K. Urediniospores. L. Uredinia on the leaf surface. M. Uredinium on the leaf surface observed under SEM. N. Urediniospore with echinulate surface observed under SEM. O. Telia on the leaf surface. P. Vertical section of a telium. Q. Teliospores. Scale bars: D, E, K = 20 μm, F, H, M = 100 μm, G = 5 μm, J, P, Q = 30 μm, N = 10 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia miscanthi on Plantago asiatica (A–H) and Miscanthus sacchariflorus (I–Q). A. Plants producing spermogonia and aecia on the leaf surface. B. Spermogonia on the leaf surface. C. Aecia on lower leaf surface. D. Vertical section of a spermogonium. E. Aeciospores. F. Vertical section of an aecium observed under SEM. G. Aeciospores with verrucose surface observed by SEM. H. Vertical section of an aecium surrounded by peridia. I. Plants producing uredinia on the leaf surface in the field. J. Vertical section of an uredinium with paraphyses. K. Urediniospores. L. Uredinia on the leaf surface. M. Uredinium on the leaf surface observed under SEM. N. Urediniospore with echinulate surface observed under SEM. O. Telia on the leaf surface. P. Vertical section of a telium. Q. Teliospores. Scale bars: D, E, K = 20 μm, F, H, M = 100 μm, G = 5 μm, J, P, Q = 30 μm, N = 10 μm.
FIGURE. Puccinia triticina on species of Poaceae. A. Vertical section of an uredinium. Scale bars: A = 30 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia triticina on species of Poaceae. A. Vertical section of an uredinium. Scale bars: A = 30 μm.
FIGURE. Puccinia poae-nemoralis on Poa sp. A. Uredinia and telia on the leaf surface. B. Vertical section of an uredinium with paraphyses. C. Immature teliospores. D. Teliospores. Scale bars: B, C, D = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia poae-nemoralis on Poa sp. A. Uredinia and telia on the leaf surface. B. Vertical section of an uredinium with paraphyses. C. Immature teliospores. D. Teliospores. Scale bars: B, C, D = 20 μm.
FIGURE. Puccinia achnatheri-sibirici on Berberis amurensis (A–H) and Stipa baicalensis (I–M). A. Plants producing spermogonia and aecia on leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Spermogonia on the upper leaf surface. E. Vertical section of an aecium surrounded with peridia. F. Aeciospores. G. Aecium observed under SEM. H. Aeciospore with verrucose surface observed under SEM. I, J. Telia on the leaf surface. K. Urediniospores. L. Teliospores. M. Vertical section of a telium. Scale bars: C, F, L, M = 20 μm, E = 50 μm, G = 100 μm, H = 5 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia achnatheri-sibirici on Berberis amurensis (A–H) and Stipa baicalensis (I–M). A. Plants producing spermogonia and aecia on leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Spermogonia on the upper leaf surface. E. Vertical section of an aecium surrounded with peridia. F. Aeciospores. G. Aecium observed under SEM. H. Aeciospore with verrucose surface observed under SEM. I, J. Telia on the leaf surface. K. Urediniospores. L. Teliospores. M. Vertical section of a telium. Scale bars: C, F, L, M = 20 μm, E = 50 μm, G = 100 μm, H = 5 μm.
FIGURE. Puccinia pygmaea on Deyeuxia purpurea. A, F. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Teliospores. E. Vertical section of a telium. Scale bars: B = 30 μm, C = 50 μm, D, E = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia pygmaea on Deyeuxia purpurea. A, F. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Teliospores. E. Vertical section of a telium. Scale bars: B = 30 μm, C = 50 μm, D, E = 20 μm.
FIGURE. Puccinia coronati-hordei on Elymus dahuricus A. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Vertical section of a telium. E. Teliospores. Scale bars: B, C, D, E = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia coronati-hordei on Elymus dahuricus A. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Vertical section of a telium. E. Teliospores. Scale bars: B, C, D, E = 20 μm.
FIGURE. Puccinia digitaticoronata on Rhamuns sp. (A–C, F, J) and species of Poaceae (D, E, G–I, K, L). A. Vertical section of spermogonia. B. Vertical section of an aecium surrounded with peridia. C. Aeciospores. D. Plants producing uredinia on the leaf surface in the field. E. Urediniospores. F. Aecium observed under SEM. G. Uredinia on the leaf surface. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Aeciospore with verrucose surface observed under SEM. K. Teliospores. L. Vertical section of a telium. Scale bars: A, I = 40 μm, B = 60 μm, C, E, K, L= 20 μm, J, F = 80 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia digitaticoronata on Rhamuns sp. (A–C, F, J) and species of Poaceae (D, E, G–I, K, L). A. Vertical section of spermogonia. B. Vertical section of an aecium surrounded with peridia. C. Aeciospores. D. Plants producing uredinia on the leaf surface in the field. E. Urediniospores. F. Aecium observed under SEM. G. Uredinia on the leaf surface. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Aeciospore with verrucose surface observed under SEM. K. Teliospores. L. Vertical section of a telium. Scale bars: A, I = 40 μm, B = 60 μm, C, E, K, L= 20 μm, J, F = 80 μm.
FIGURE. Puccinia eleganticoronata on Rhamnus davurica (A–C, E–G, J) and Poa sp. (D, H, I). A. Plants producing spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of an aecium surrounded with peridia. D, H. Telia on the stems. E. Vertical section of a spermogonium. F. Aeciospores. G. Aeciospore observed under SEM. I. Vertical section of a telium. J. Aecium observed under SEM. Scale bars: C = 50 μm, E, I = 30 μm, F = 20 μm, G = 5 μm, J = 60 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia eleganticoronata on Rhamnus davurica (A–C, E–G, J) and Poa sp. (D, H, I). A. Plants producing spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of an aecium surrounded with peridia. D, H. Telia on the stems. E. Vertical section of a spermogonium. F. Aeciospores. G. Aeciospore observed under SEM. I. Vertical section of a telium. J. Aecium observed under SEM. Scale bars: C = 50 μm, E, I = 30 μm, F = 20 μm, G = 5 μm, J = 60 μm.
FIGURE. Puccinia protuberanticoronata on Rhamnus ussuriensis (A–D, F, I) and Calamagrostis kengii (E, G, H). A. Spermogonia and aecia on the leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the stem. E. Teliospores. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. I. Aeciospore with verrucose surface observed under SEM. Scale bars: B, E, H = 20 μm, C, F = 50 μm, I = 5 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia protuberanticoronata on Rhamnus ussuriensis (A–D, F, I) and Calamagrostis kengii (E, G, H). A. Spermogonia and aecia on the leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the stem. E. Teliospores. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. I. Aeciospore with verrucose surface observed under SEM. Scale bars: B, E, H = 20 μm, C, F = 50 μm, I = 5 μm.
FIGURE. Puccinia coronati-agrostidis on Agrostis sp. A, B. Uredinia on the leaf surface. C. Vertical section of an uredinium. D. Urediniospores. Scale bars: C = 20 μm, D =10 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia coronati-agrostidis on Agrostis sp. A, B. Uredinia on the leaf surface. C. Vertical section of an uredinium. D. Urediniospores. Scale bars: C = 20 μm, D =10 μm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.