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Figure 3 from: Xu R, Su W, Wang Y, Tian S, Li Y, Phukhamsakda C (2024) Morphological characteristics and phylogenetic evidence reveal two new species and the first report of Comoclathris (Pleosporaceae, Pleosporales) on dicotyledonous plants from China. MycoKeys 101: 95-112. https://doi.org/10.3897/mycokeys.101.113040
Figure 3 Comoclathris xanthoceratis (HMJAU 64846, holotype) A–C appearance of ascomata on host substrate D vertical section of ascoma E peridium F pseudoparaphyses G–J asci (H, I) asci production from the sterile condition) K–Q ascospores R culture characteristics on PDA after three weeks at 25 °C (black dots indicate the sexual reproduction in culture condition). Scale bars: 200 µm (C); 50 µm (D); 20 µm (G–J); 10 µm (E, K–Q); 5 µm (F).
Figure 2 from: Xu R, Su W, Wang Y, Tian S, Li Y, Phukhamsakda C (2024) Morphological characteristics and phylogenetic evidence reveal two new species and the first report of Comoclathris (Pleosporaceae, Pleosporales) on dicotyledonous plants from China. MycoKeys 101: 95-112. https://doi.org/10.3897/mycokeys.101.113040
Figure 2 Comoclathris clematidis (HMJAU 64844, holotype) A, B appearance of ascomata on host substrate C vertical section of ascoma D peridium E pseudoparaphyses F–H asci I–O ascospores P, Q culture characteristics on PDA after three weeks at 25 °C. Scale bars: 200 µm (B); 50 µm (C); 20 µm (E–H, O); 10 µm (D, I–N).
Supporting publication for 'Prevalence sample-based guidance for reporting 2023 data'
<p>The record is aimed at helping the reporting countries to submit their 2023 sample-based level data to the EFSA Data Collection Framework. We include here two excel files and one XML file, and we give below specific information on their use.</p> <p>The two Excel documents help in mapping terms from the matrix catalogue ZOO_CAT_MATRIX used in the aggregated prevalence data model to FoodEx2 codes, and offer examples on how prevalence data can be reported using SSD2 and how data are aggregated afterwards. The XML file is the same example as in the Excel file with similar title but in the XML format that allows for it be uploaded in the Data Collection Framework.</p>
Figure 2 from: Yu S, Wang S (2024) First report of the genus Woonpaikia Park, 2010 (Lepidoptera, Lecithoceridae) from China, with the description of two new species. ZooKeys 1192: 1-7. https://doi.org/10.3897/zookeys.1192.115033
Figure 2 Wing venation of Woonpaikia spp. AW. imperspicua sp. nov., paratype, slide no. YUS060 BW. similangoonae sp. nov. paratype, slide no. YUS075. Scale bars: 2.0 mm.
Figure 1 from: Yu S, Wang S (2024) First report of the genus Woonpaikia Park, 2010 (Lepidoptera, Lecithoceridae) from China, with the description of two new species. ZooKeys 1192: 1-7. https://doi.org/10.3897/zookeys.1192.115033
Figure 1 External features of Woonpaikia spp. A–CW. angoonae Park, 2010, male, YUS063 B lateral view of head C close-up of scape D–FW. imperspicua sp. nov., holotype, male, YUS064 E lateral view of head F close-up of scape G–IW. similangoonae sp. nov., male, YUS062 H lateral view of head I close-up of scape. Scale bars: 2.0 mm.
Figure 3 from: Yu S, Wang S (2024) First report of the genus Woonpaikia Park, 2010 (Lepidoptera, Lecithoceridae) from China, with the description of two new species. ZooKeys 1192: 1-7. https://doi.org/10.3897/zookeys.1192.115033
Figure 3 Male genitalia of Woonpaikia spp. AW. angoonae Park, 2010, slide no. YUS063 BW. imperspicua sp. nov., holotype, slide no. YUS064 CW. similangoonae sp. nov., slide no. YUS062. Scale bars: 0.5 mm.
Figure 1 from: Livermore L, Little H, Goodwin JV, Orli S, Hardy H, Berger F, Braker E, Chapman J, Cohen L, Grant S, Grosso J, Jennings D, Mast A, Motz G, Nelson G, Rios N, Rossi V, Schuster F, Snyder RA, Sobers K, Sweeney P, Watson K, Wilkins A, Zaspel J, Zimkus BM, Zorich DM (2024) Digitization Coordination Workshop Report. Research Ideas and Outcomes 10: e120626. https://doi.org/10.3897/rio.10.e120626
Figure 1 Photograph of the workshop participants at the Smithsonian National Museum of Natural History taken by Mary Behlke - Smithsonian National Museum of Natural History.
IGV screenshot for manual validation of 60 reported false positive small CNVs in SurVIndel2
Open the record for dataset details and reuse information.
MS²Rescore report example
Open the record for dataset details and reuse information.
Supplementary material 1 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Discussion question response data
Figure 2 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 2 Polling results of discussion session 1 "Extent of imaging", question 1: "What are the barriers to increasing the extent of imaging the oceans?".
Figure 9 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 9 Polling results of discussion session 3 "Automation", question 3: "What do you think is the biggest barrier to making AI systems applicable across datasets?".
Figure 7 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 7 Polling results of discussion session 3 "Automation", question 1: "Which AI Frameworks are your lab using/planning to use?".
Figure 1 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 1 In-person participants of the Marine Imaging Workshop 2022 (photo credit: Olivier Dugornay, Ifremer).
Figure 12 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 12 Polling results of discussion session 5 "Future of marine imaging", question 1: "Where have you seen the biggest progress of marine imaging during this workshop?.
Figure 4 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 4 Polling results of discussion session 1 "Extent of imaging", question 3: "Which area/volume does all image data you have ever worked with cover?".
Figure 11 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 11 Polling results of discussion session 4 "Reproducibility", question 2: "Can we reproduce studies at all?".
Figure 3 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 3 Polling results of discussion session 1 "Extent of imaging", question 2: "Have you used crowd-sourced marine image data?".
Figure 10 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 10 Polling results of discussion session 4 "Reproducibility", question 1: "Which part of Findable/Accessible/Interoperable/Reusable is most important to improve reproducibility?".
Figure 6 from: Borremans C, Durden J, Schoening T, Curtis EJ, Adams L, Branzan Albu A, Arnaubec A, Ayata S-D, Baburaj R, Bassin C, Beck M, Bigham KT, Boschen-Rose RE, Collett C, Contini M, Correa PVF, Dominguez-Carrió C, Dreyfus G, Duncan G, Ferrera M, Foulon V, Friedman A, Gaikwad S, Game C, Gaytán-Caballero A, Girard F, Giusti M, Hanafi-Portier M, Howell K, Hulevata I, Itiowe K, Jackett C, Jansen J, Karthäuser C, Katija K, Kernec M, Kim G, Kitahara M, Langenkämper D, Langlois T, Lanteri N, Jianping Li C, Li Q-R, Liabot P-O, Lindsay D, Loulidi A, Marcon Y, Marini S, Marranzino A, Massot-Campos M, Matabos M, Menot L, Moreno B, Morrissey M, Nakath D, Nattkemper T, Neufeld M, Obst M, Olu K, Parimbelli A, Pasotti F, Pelletier D, Perhirin M, Piechaud N, Pizarro O, Purser A, Rodrigues CF, Ceballos Romero E, Schlining B, Song Y, Sosik HM, Sourisseau M, Taormina B, Taucher J, Thornton B, Van Audenhaege L, von der Meden C, Wacquet G, Williams J, Witting K, Zurowietz M (2024) Report on the Marine Imaging Workshop 2022. Research Ideas and Outcomes 10: e119782. https://doi.org/10.3897/rio.10.e119782
Figure 6 Polling results of discussion session 2 "Interoperability in marine imaging", question 2: "Who has a mandate to define interfaces for interoperability between marine imaging software tools?".
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.