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4,563
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4,563 results for “Correlation”
Gene expression of subtypes of neocortical projection neurons over developmental time is correlated with cell class-specific chromatin accessibility
GEO Series GSE116146. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Cathepsin V is correlated with the prognosis and tumor microenvironment in liver cancer
GEO Series GSE233817. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single cell fitness of B. subtilis correlates with the ability to adapt to various stresses.
GEO Series GSE33506. Bacillus subtilis. 3 samples. Type: Expression profiling by array.
Downregulated CDH3 is significantly correlated with better prognosis from lung adenocarcinomas and decreases proliferation and migration in lung cancer cells in vitro
GEO Series GSE186405. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Variable proportions of Plasmodium falciparum schizonts expressing MSPDBL2 in clinical isolates and genes with correlated expression
GEO Series GSE196670. Plasmodium falciparum. 17 samples. Type: Expression profiling by high throughput sequencing.
Differential gene expression profile correlates with bortezomib responsiveness in steroid-resistant cGVHD
GEO Series GSE56495. Homo sapiens. 54 samples. Type: Expression profiling by array.
Differential expression and correlation analysis of mRNA and miRNA based on Brain transcriptome in the discus fish (Symphysodon aequifasciatus)
GEO Series GSE140349. Symphysodon aequifasciata. 2 samples. Type: Expression profiling by high throughput sequencing.
Correlation of transcriptomic responses and metal bioaccumulation in Mytilus edulis L. reveals early indicators of stress
GEO Series GSE58649. Mytilus edulis. 52 samples. Type: Expression profiling by array.
Feeding-Induced Discordance: Protein-mRNA Correlation Varies by Zone, Sex, and Fasting in Mouse Hepatocytes
GEO Series GSE291303. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Dataset related to article "Independent expression of circulating and tissue levels of PD-L1: correlation of clusters with tumor metabolism and outcome in patients with non-small cell lung cancer."
<p>PURPOSE:</p> <p>To evaluate the clinical-pathological and prognostic significance of the circulating PD-L1 level in patients with surgically treated NSCLC, by combining data for PD-L1 expression with other immune-related markers and tumor metabolism.</p> <p>METHODS:</p> <p>Overall, 40 patients with resected NSCLC (stage Ia-IIIa) who had preoperative blood storage and underwent staging PET/CT were enrolled for the study. In all cases, we determined plasma levels of PD-L1 (pg/ml), immune-reactive areas (IRA %) covered by CD3, CD68, CD20, CD8, PD-1, and PD-L1 in the tumor specimen, and metabolic parameters on PET, i.e., SUV<sub>max</sub>, SUV<sub>peak</sub>, metabolic tumor volume (MTV), and total lesion glycolysis (TLG). Variables were statistically analyzed to establish their association with disease-free survival (DFS).</p> <p>RESULTS:</p> <p>The circulating levels of PD-L1 in the bloodstream could be determined in 38/40 (95%) samples. The mean and median expression levels were 34.86 pg/ml and 24.83 pg/ml, respectively. We did not find any statistically significant correlation between circulating PD-L1 and tissue expression of PD-L1/PD-1. Some mild degree of positive correlation was determined between tissue PD-L1 and SUV<sub>max</sub> (ρ =&thinsp;0.390; p =&thinsp;0.0148). Hierarchical clustering combining circulating, tissue, and metabolic parameters identified clusters with high metabolic tumor burden or high expression of plasma PD-L1 levels (Z score ≥ 2) as having a poor DFS (p =&thinsp;0.033). The multivariate analysis detected stage and metabolism (i.e., SUV<sub>max</sub> and SUV<sub>peak</sub>) as independent prognostic factors for DFS.</p> <p>CONCLUSION:</p> <p>Plasma levels of PD-L1 are independent of the expression of PD-1/PD-L1 in NSCLC tumor tissue and, when combined with other clinical-pathological parameters, allow for the identification of clusters with different outcomes.</p>
Dataset related to article "Macrophage morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases"
<p>This record contains data related to article "Morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases"</p> <p>Abstract</p> <p>It has long been known that in vitro polarized macrophages differ in morphology. Stemming from a conventional immunohistology observation, we set out to test the hypothesis that morphology of tumor-associated macrophages (TAMs) in colorectal liver metastasis (CLM) represents a correlate of functional diversity with prognostic significance. Density and morphological metrics of TAMs were measured and correlated with clinicopathological variables. While density of TAMs did not correlate with survival of CLM patients, the cell area identified small (S-TAM) and large (L-TAM) macrophages that were associated with 5-yr disease-free survival rates of 27.8% and 0.2%, respectively (P < 0.0001). RNA sequencing of morphologically distinct macrophages identified LXR/RXR as the most enriched pathway in large macrophages, with upregulation of genes involved in cholesterol metabolism, scavenger receptors, MERTK, and complement. In single-cell analysis of mononuclear phagocytes from CLM tissues, S-TAM and L-TAM signatures were differentially enriched in individual clusters. These results suggest that morphometric characterization can serve as a simple readout of TAM diversity with strong prognostic significance.</p>
Cross-correlation functions of Popocatépetl volcano (1999-2000, 2015-2016, and 2019-2020)
<p>The ZIP file contains the cross-correlations (CC) functions computed from ambient seismic noise of Popocatépetl's temporal and permanent seismic networks (e.g., 1999-2000, 2015-2016, and 2019-2020). The CC are organizated in two folders BM and PCC, the CC computed using Bensen method and Phase Weighting cross-correlation, respectevely.</p><p>Data in SAC format. All details about stations (name, latitude longitude, elevation) and data (sampling rate, starting and ending time, etc.) are in the HEADER of each file.</p>
Dataset for "Validation of SSDE calculation in a modern CT scanner and correlation with effective dose"
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FIGURE 1. Cladogram being probed with a in Character correlation and its use for identification
FIGURE 1. Cladogram being probed with a wildcard scored for the first two characters.
pseudobulk_CHAS_correlations
<p>CHAS scores calculated for pseudobulk H3K27ac samples (made up of astrocyte, microglia, neuron, and oligodendrocytes), and their associated proportions </p> <p>Excel sheet descriptions </p> <p>49samples_30milreads: 49 pseudobulk samples made up of 30 million randomly sampled reads each</p> <p>49samples_20milreads: 49 pseudobulk samples made up of 20 million randomly sampled reads each </p> <p>49samples_10milreads: 49 pseudobulk samples made up of 10 million randomly sampled reads each </p> <p>25samples_30milreads: 25 pseudobulk samples made up of 30 million randomly sampled reads each </p> <p>10samples_30milreads: 10 pseudobulk samples made up of 30 million randomly sampled reads each </p>
pseudobulk_NeuN_CHAS_correlations
<p>CHAS scores for 58 pseudobulk H3K27ac samples (made up of NeuN+ and NeuN- H3K27ac data from Girdhar et al. (2018)), and their associated proportions </p> <p> </p> <p> </p>
10M anonymized Twitter human and bot profiles correlated with 2022 Russo-Ukrainian War discussion.
Open the record for dataset details and reuse information.
Alignments from: Gene lack of expression of embryogenesis related factors correlates with structural reduction in the holoendoparasitic Angiosperm Pilostyles boyacensis (Apodanthaceae)
<p>These files are the alignments used in the work "Gene loss expression in the early embryogenesis network correlates with structural reduction in the holoendoparasitic angiosperm <em>Pilostyles boyacensis </em>(Apodanthaceae)".</p> <p>Nucleotide alignments for the AGO, AP2-ERF, HD-ZIP-III and IV, PIN, RLK-CR4, RLK-RPK2, and WOX gene families. Coding sequences were download from the following databases: TAIR database (Poole, 2007), Phytozome v13) (Goodstein et al., 2012), Cucurbit Genomics Database (Zheng et al., 2019), OneKP database (Carpenter et al., 2019). Also, new data generated for <em>P. boyacensis</em> and deposited in Genbank with the codes OR296323-OR296355.</p> <p>The codes of sequences are in Appendix 1 of "Gene loss expression in the early embryogenesis network correlates with structural reduction in the holoendoparasitic angiosperm <em>Pilostyles boyacensis</em> (Apodanthaceae). The symbol # indicates a numeric or alphanumeric code associated with the gene according to the nomenclature of each base. Alignments were performed using the RevTrans platform (Wernersson and Pedersen, 2003), which translates the sequences into amino acids, aligns them using MAFFT with its automatic parameters, and then generates the corresponding matrix in nucleotides.</p>
Dataset related to article "Is testis sparing surgery safe in patients with incidental small testicular lesions referring to a fertility center? A retrospective analysis reporting factors correlated to malignancy and long-term oncological outcomes "
<p>This record contains raw data related to article “Is testis sparing surgery safe in patients with incidental small testicular lesions referring to a fertility center? A retrospective analysis reporting factors correlated to malignancy and long-term oncological outcomes"</p> <p>Abstract</p> <p><strong>Purpose: </strong> To define predictors of malignancy after Testis sparing surgery (TSS) in patients referring to a fertility center with incidental small testicular lesions. Sub analyses were performed to assess predictors of Leydig cell hyperplasia and Leydig cell tumor.</p> <p><strong>Materials and methods: </strong> We performed a retrospective analysis of a single institutional database including patients treated with TSS between 2002 and 2020. All patients who underwent TSS as a first line surgical approach for incidentally detected lesions found during fertility evaluation were included.</p> <p><strong>Results: </strong> Data of 64 patients were collected. The median follow up was 58 months and no recurrences were observed. At univariable logistic regression multifocal lesions, hypervascularization, microlithiasis, age and lesion size were significantly associated with malignancy. At multivariable logistic regression lesion dimension, hypervascularization and multifocal lesions were predictors of malignancy. Lesions smaller than 5 mm proved to be benign in 96.6% of the cases (32/33). Intraoperative color of the lesion and US pattern of vascularization were predictors at multivariable logistic regression for Leydig cell hyperplasia and Leydig cell tumor.</p> <p><strong>Conclusion: </strong> Ultrasonographic characteristics and intraoperative appearance of the lesion can predict the malignant nature of small testicular lesions, guiding their surgical management in patients referring to a fertility center. Based on our experience, clinicians may safely perform TSS in carefully selected patients.</p> <p> </p>
Dataset related to article "OCULAR PHENOTYPE AND ELECTRORETINOGRAM ABNORMALITIES IN LAFORA DISEASE AND CORRELATION WITH DISEASE STAGE"
<p>The dataset contains clinical data of a single Eye-Lafora patient involved in the study described at title followed at Fondazione Besta</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.