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Fig. 15 in Phylogenetic approach redefines Plistonax (Coleoptera, Cerambycidae, Lamiinae) with new combinations and a new genus of flat-faced long-horned beetles
Fig. 15 Plistonax inopinatus (a– g): a male's dorsal habitus; b male's ventral habitus; c female's dorsal habitus (paratype); d female's ventral habitus (paratype); e lateral habitus; f head (anterior view); g semierect seta of the elytral punctures, character state 28:0 (thick), micrograph (from left to right, base and apex; zoom 1500×). P. rafaeli (holotype) (h– l): h male's dorsal habitus; i male's ventral habitus; j lateral habitus; k head (anterior view); l semierect seta of the elytral punctures, character state 28:1 (slen- der), micrograph (from left to right, base and apex; zoom 900×). Scale bars: 5 mm, except figures f, k (1 mm), g, and l (25 μm)
Fig. 1 in Phylogenetic approach redefines Plistonax (Coleoptera, Cerambycidae, Lamiinae) with new combinations and a new genus of flat-faced long-horned beetles
Fig. 1 Character illustrations: a 1:0 male's gena with margin curved (anterior view, Plistonax inopinatus). b 1:1 male's gena with margin straight (anterior view, Aegomorphus jaspideus). c 3:0 scape slightly expanded to the mid-region (dorsal view, Ateralphus dejeani). d 3:1 scape strongly expanded in the mid-region (dorsal view, P. inopinatus). e 25:0 elytron with median-basal crest reaching no more than the half and 26:0 median-basal crest with anterior region straight (dorsal view, P. albituberculatus). f 25:1 elytron with median-basal crest reaching beyond the half and 26:1 median-basal crest with anterior region curved (dorsal view, P. inopinatus). g 19:0 prosternal process with lateral margin concave (ventral view, Steirastoma breve). h 19:1 prosternal process with lateral margin straight (ventral view, P. rafaeli). i 19:2 prosternal process with lateral margin convex (ventral view, P. inopinatus). Red arrows highlight the character states 1:0 and 1:1. Mbc, median-basal crest. Scale bars: 1 mm
Fig. 3 in Phylogenetic approach redefines Plistonax (Coleoptera, Cerambycidae, Lamiinae) with new combinations and a new genus of flat-faced long-horned beetles
Fig. 3 Character photographs: a 12:0 pronotum with punctures mainly in the anterior and posterior margins, rarely in the central region (dorsal view, Acanthoderes (Acanthoderes) daviesii). b 12:1 pronotum with punctures distributed uniformly, 13:0 pronotum with small punctures, 17:0 pronotum without median-longitudinal ridge (dorsal view, Ateralphus dejeani). c 13:1 pronotum with large punctures, 17:1 pronotum with medianlongitudinal ridge, and 18:1 pronotum with sparse white setae (dorsal view, Plistonax inopinatus). d 30:1 femora with sparse white setae and 32:1 male's protarsus with fringes of black setae (dorsal view, male of P. inopinatus). e 31:0 metatibia with darker stain near the apex in subapical position (lateral view, P. inopinatus). f 31:1 metatibia with darker stain near the apex in apical position (dorsal view, P. insolitus). Red arrow highlights the character state 17:1; blue arrows highlight the character states 31:0 and 31:1. Scale bars: 1 mm
Fig. 9 in Phylogenetic approach redefines Plistonax (Coleoptera, Cerambycidae, Lamiinae) with new combinations and a new genus of flat-faced long-horned beetles
Fig. 9 Male terminalia: Miguelmonneus insolitus (a–f): a tegmen (ventral view); b endophallus (ventral view); c endophallus (lateral view); d ventral arc (ventral view); e tergite VII (dorsal view); f tergite VIII (dorsal view). Plistonax albituberculatus (g–l): g tegmen (ventral view); h endophallus (ventral view); i endophallus (lateral view); j ventral arc (ventral view); k tergite VII (dorsal view); l tergite VIII (dorsal view). Points and gray shapes represent sclerotized structures. Ap, apophysis; Is, internal sac; Ml, median lobe; Ms, median strut; Par, paramere; Rp, ringed part. Scale bars: 0.5 mm
Fig. 8 in Phylogenetic approach redefines Plistonax (Coleoptera, Cerambycidae, Lamiinae) with new combinations and a new genus of flat-faced long-horned beetles
Fig. 8 Miguelmonneus insolitus (a–f): a male's dorsal habitus; b male's ventral habitus; c female's dorsal habitus; d female's ventral habitus; e lateral habitus; f head (anterior view). Acanthoderes (Acanthoderes) daviesii: g head (anterior view). Plistonax albolinitus (h–n): h male's dorsal habitus; i male's ventral habitus; j female's dorsal habitus; k female's ventral habitus; l lateral habitus; m head (anterior view); n semierect seta of the elytral punctures, character state 28:0 (thick), micrograph (from left to right, base and apex; zoom 1300×). Scale bars: 5 mm, except figures f, g, m (1 mm), and n (25 μm)
FIGURE 2 in Phylogenetic relationships of Malesian Lady Ferns (Athyrium) provide insight into long-standing species complexes
FIGURE 2. Sampling localities of Athyrium in Malesia. 1) West Java, Mount Gede-Pangrango; 2 West Java, Mount Burangrang and Mount Bukit Tunggul; 3. Mt. Patuha; 4) Bali, Mount Batukaru; 5) West Sulawesi, Mount Gandang Dewata.
FIGURE 7 in Phylogenetic relationships of Malesian Lady Ferns (Athyrium) provide insight into long-standing species complexes
FIGURE 7. Athyrium erythropodum silhouettes showing leaf morphology, from Fraser-Jenkins 22018, Java.
FIGURE 1 in Phylogenetic relationships of Malesian Lady Ferns (Athyrium) provide insight into long-standing species complexes
FIGURE 1. Field photos of selected Athyrium from Java. A. Athyrium puncticaule, Wardani 1184. B. Athyrium pulcherrimum, Wardani 1182. C. Athyrium nigripes, Wei 514. D. Athyrium erythropodum, Wei PE-BO-2002. E. Athyrium nigripes, Wei 514.
FIGURE 4 in Phylogenetic relationships of Malesian Lady Ferns (Athyrium) provide insight into long-standing species complexes
FIGURE 4. Results from the maximum-likelihood phylogenetic analysis. Important clades are labeled. Samples from Java, Bali, and Sulawesi are in boldface. Numbers at nodes indicate bootstrap support values. The tree is trimmed to show only the most relevant outgroup taxa.
FIGURE 3 in Phylogenetic relationships of Malesian Lady Ferns (Athyrium) provide insight into long-standing species complexes
FIGURE 3. Selected Javan species of Athyrium showing variations in adaxial setae indicated by arrows. A. Athyrium nigripes with setae present upon rachises, costae, costules and ultimate segment lobes. Arrows point to setae on ultimate segment lobes. B. Athyrium nitidulum with setae upon costules. C. Athyrium erythropodum with setae present only upon pinna costae.
FIGURE 1. Galianthe longifolia. A. Habit. B. Stipular sheath. C–E. Long-styled flower. C. Flower. D in Advancements in Galianthe (Spermacoceae-Rubiaceae) knowledge: complete description of G. longifolia and new records for G. thalictroides in Mato Grosso do Sul, Brazil
FIGURE 1. Galianthe longifolia. A. Habit. B. Stipular sheath. C–E. Long-styled flower. C. Flower. D. Hypanthium, calyx, style, and stigma. E. Opened corolla. F–H. Short-styled flower. F. Flower. G. Hypanthium, calyx, style, and stigma. H. Opened corolla. I–K. Seed. I. Seed, dorsal view. J. Seed, ventral view. K. Seed, cross section. L. Fruit. A–H extracted from Cabral (2009), I–L de Cordeiro C.B. 1969 (C). Ilustrated by L. Simón
FIG. 4 in Long-Term Turtle Declines: Protected Is a Verb, Not an Outcome
FIG. 4. (A) Population Viability Analysis for Spotted Turtles for the historic North Wetland Complex (NWC) site. (B) Population Viability Analysis for Spotted Turtles for the historic South Wetland Complex (SWC) site. In both graphs, the line represents the average number of individuals starting with the estimated population size from 1987–1992 and projected into the future using Program VORTEX (error bars are SDs). The black circle represents the estimated mean population size from Program MARK for 2014–2017. In both cases, the estimated population size projected from VORTEX was within ten individuals from the estimated population size from MARK during 2014–2017.
FIG. 3 in Long-Term Turtle Declines: Protected Is a Verb, Not an Outcome
FIG. 3. Estimates of annual survivorship rates for Spotted Turtles from the historic (1987–1992) and contemporary (2014–2017) sampling periods. Estimates are broken down by population (NWC, North Wetland Complex; SWC, South Wetland Complex) and sex (M, males; F, females). There were no significant changes in survivorship rates between sampling periods within any population. Error bars are 95% confidence intervals of survivorship estimates generated in Program MARK.
FIG. 1 in Long-Term Turtle Declines: Protected Is a Verb, Not an Outcome
FIG. 1. Estimated population size of Spotted Turtles over time (historic population sizes are from 1987–1992 and contemporary population sizes are from 2014–2017). The estimated mean number of individuals shown separately for males (solid black bars) and females (diagonally striped bars), and the North Wetland Complex (NWC) and the South Wetland Complex (SWC). Error bars are standard error estimates of population size from Program MARK. Significant differences between the estimated mean number of males and females are denoted with an *.
FIG. 3 in Phylogeny of African Long-Fingered Frogs (Arthroleptidae: Cardioglossa) Reveals Recent Allopatric Divergences in Coloration
FIG. 3. Chronogram displaying divergence times within Cardioglossa and the Arthroleptidae based on the concatenated dataset. Bars at nodes represent 95% highest posterior density estimates and asterisk (*) denotes the nodes anchored with a secondary calibration. All nodes have support values.0.95 unless otherwise noted. In addition, Bayesian species delimitation probabilities are depicted in the box at each node within Cardioglossa under three different combinations of priors: left, large population sizes (Ne; H ¼ 3, 0.02) with deep divergences (s ¼ 3, 0.3); center, small Ne (H ¼ 3, 0.0002) with shallow divergences (s ¼ 3, 0.003); right, large Ne (H ¼ 3, 0.02) with shallow divergences (s ¼ 3, 0.003). Support values below 0.95 are colored red. See Data Accessibility for tree file.
FIG. 1 in Phylogeny of African Long-Fingered Frogs (Arthroleptidae: Cardioglossa) Reveals Recent Allopatric Divergences in Coloration
FIG. 1. Map showing the currently recognized distributions (range polygons based on IUCN, 2020) of the 18 species of Cardioglossa in this study showing the locations of our samples. For details on sampling, see Supplemental Table 1 (see Data Accessibility).
FIG. 2 in Phylogeny of African Long-Fingered Frogs (Arthroleptidae: Cardioglossa) Reveals Recent Allopatric Divergences in Coloration
FIG. 2. Maximum likelihood phylogeny of Cardioglossa based on the multilocus concatenated, partitioned dataset of mitochondrial and nuclear data. A black dot at each node indicates high support (e.g., Bayesian posterior probability.0.95, maximum likelihood bootstrap.70). Tip labels of individuals used for divergence time analysis are indicated in boldface. Photographs are not scaled to size. (Photo credits: D.C.B.: C. melanogaster, C. oreas manengouba, C. pulchra, C. schioetzi; M.B.: C. annulata, C. escalerae, C. leucomystaX 1; Brian Freiermuth: C. leucomystaX 2, C. oreas oreas; E.G.: C. congolia, C. cyaneospila; V.G.: C. alsco; M.H.: C. nigromaculata, C. Venusta; Greg Jongsma: C. gracilis; P.J.M.: C. nigromaculata 'Bioko'; Dan Portik: C. elegans, C. occidentalis; M.-O.R.: C. gratiosa, C. trifasciata; images available via https://doi.org/10.7479/3yje-r341). See Data Accessibility for tree file.
Dataset for "Metagenome-Assembled Bacterial Genomes from Long Accurate Reads Associated with Capilliphycus salinus ALCB114379"
<p>We present the raw genomic dataset of the marine cyanobacterium Capilliphycus salinus ALCB114379, sequenced using PacBio HiFi long-read technology.</p> <p><strong>ABSTRACT</strong></p> <p><span>We report the complete genome sequences of five bacteria linked to the marine cyanobacterium <em>Capilliphycus salinus</em> ALCB114379 from the phylum Pseudomonadota. This genetic diversity offers new insights into the genetic landscape and potential symbiotic relationships of cyanobacteria-associated microbiota.</span></p>
D_S_long_data
Open the record for dataset details and reuse information.
Comprehensive Structural Variant Benchmark Dataset: 1100 VCF files from long-read sequencing of 10 NCBI individuals
<p>We initially collected 10 NCBI individuals: HG002 family pedigree data (HG002 [son], HG003 [father], HG004 [mother]), the HG005 family pedigree data (HG005 [son], HG006 [father], HG007 [mother]), the NA12878 subject, the HG00096 subject, the HG00512 subject and the CHM13 subject. Then we used PacBio (CLR: Continuous Long Read, CCS: Circular Consensus Sequencing) and Nanopore (ONT) platforms, 5 aligners and 10 callers to construct the pipelines, with most parameters set to default values. After that, except for 6 invalid pipelines(pbmm2-Nanovar, lra-Picky, lra-delly, lra-NanoVar, lra-NanoSV, lra-pbsv), we obtain 1100 VCF files.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.