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Table S2 Phosphoproteins detected by untargeted proteomics
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Figure S1. Funnel Plot of Logit Transformation of Proportions Against its Standard Errors for Detecting Publication Bias
<p>Figure S1. Funnel Plot of Logit Transformation of Proportions Against its Standard Errors for Detecting Publication Bias, Provided as Supplementary Material for Assessing Publication Bias in the Study of Worldwide Prevalence of Internet Addiction Among Medical Students by Zhandos Salpynov and Co-Authors.</p> <p> </p>
Figure 3 in New host detection of the parasitic mite, Erythraeus pistacicus (Trombidiformes: Erythraeidae) from Iran and indication of possible infection with bacterial symbionts
Figure 3. Phylogenetic tree based on wsp sequences of Wolbachia, constructed by a neighbor-joining procedure. Wolbachia strains are depicted by the host name. The accession numbers are shown after the host name. Numbers on the nodes indicate bootstrap percent confidence values.
raycast: multi-view object detection in UAV image clouds (case-study data)
<p>This package contains image data for conducting multi- and single-view sewer inlet detection in UAV image clouds. The package consists in: - individual UAV images, taken with high overlap and corrected for lens distortion - orthophoto of the case study area, clipped to road boundaries.</p>
Supplementary material 2 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Primer information : Explanation note: Primers used in this study.
Supplementary material 1 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Sampling information : Explanation note: Sample list and sampling information of this study.
Figure 4 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Figure 4 Haplotype network of Dodona butterfly in Taiwan. Blue circles represented ssp. formosana, whereas orange circles mentioned ssp. esakii.
Figure 1 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Figure 1 Male genitalia of Dodona samples. A D. formosana (spp. formosana) B D. formosana (spp. esakii) C D. eugenes eugenes D D. eugenes venox E D. egeon F D. maculosa.
Figure 3 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Figure 3 Phylogenetic relationships of sampled Dodona butterflies based on BI method. Posterior probabilities are showed above branches and ML bootstrap values are below. A ssp. formosana B spp. esakii.
Figure 5 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Figure 5 Pinned specimens of Dodona formosana and their relatives. A D. formosana (spp. formosana) ♂ B D. formosana (spp. formosana) ♀ C D. formosana (spp. esakii) ♂ D D. formosana (spp. esakii) ♀ E D. eu. eugenes ♂ F D. eu. venox ♂ G D. egeon ♂ H D. egeon ♀ I D. maculosa ♂ J D. maculosa ♀ K type of D. formosana (SEHU).
Figure 2 from: Wu L-W, Lin W-J, Hsu Y-F (2018) A cryptic species, Dodona formosana, detected in the Dodona eugenes species complex: clarification of the taxonomic status of the Dodona butterfly in Taiwan. ZooKeys 736: 59-77. https://doi.org/10.3897/zookeys.736.22062
Figure 2 Morphological comparison of genitalia between ssp. formosana and ssp. esakii. A Shape of genitalia (t-test, t = -0.9868, d.f. = 18, p = 0.3368) B Valva (t-test, t = 2.9904, d.f. = 18, p < 0.05) C Uncus (t-test, t = 4.6152, d.f. = 18, p<0.001) D Phallus (t-test, t = 0.6356, d.f. = 18, p = 0.5331).
Figures 1-4 from: Ribeiro-Silva L, Perrella DF, Biagolini-Jr CH, Zima PVQ, Piratelli AJ, Schlindwein MN, Galetti-Jr PM, Francisco MR (2018) Use of camera traps for detecting nest predation of birds in the Atlantic Forest of Brazil. Zoologia 35: 1-8. https://doi.org/10.3897/zoologia.35.e14678
Figures 1-4 Predators of bird nests recorded with camera traps in an area of Atlantic rainforest. (1) the Collared Forest-falcon, Micrastur semitorquatus, depredating a nest of the White-necked Thrush, Turdus albicollis. (2) the Red-breasted Toucan, Ramphastos dicolorus, depredating a nest of the Ruddy Quail-dove, Geotrygon montana. (3) the Ocelot, Leopardus pardalis, depredating a nest of the Gray-hooded Flycatcher, Mionectes rufiventris. (4) the Gray Slender Mouse Opossum, Marmosops incanus depredating a nest of the Royal Flycatcher, Onychorhynchus swainsoni.
FIGURE 9 in Detection of Cryptic taxa in the genus Leptophryne (Fitzinger, 1843) (Amphibia; Bufonidae) and the description of a new species from Java, Indonesia
FIGURE 9. The habitat of Leptophryne javanica sp.nov. in Mt. Ciremai. Photos by Farist Alhadi
Supplementary material 5 from: Deiner K, Lopez J, Bourne S, Holman LE, Seymour M, Grey EK, Lacoursière-Roussel A, Li Y, Renshaw MA, Pfrender ME, Rius M, Bernatchez L, Lodge DM (2018) Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method. Metabarcoding and Metagenomics 2: e28963. https://doi.org/10.3897/mbmg.2.28963
Alternative statistical model :
Supplementary material 4 from: Deiner K, Lopez J, Bourne S, Holman LE, Seymour M, Grey EK, Lacoursière-Roussel A, Li Y, Renshaw MA, Pfrender ME, Rius M, Bernatchez L, Lodge DM (2018) Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method. Metabarcoding and Metagenomics 2: e28963. https://doi.org/10.3897/mbmg.2.28963
4_NTC :
Supplementary material 2 from: Deiner K, Lopez J, Bourne S, Holman LE, Seymour M, Grey EK, Lacoursière-Roussel A, Li Y, Renshaw MA, Pfrender ME, Rius M, Bernatchez L, Lodge DM (2018) Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method. Metabarcoding and Metagenomics 2: e28963. https://doi.org/10.3897/mbmg.2.28963
Bioinformatic pipeline and thresholds :
Supplementary material 3 from: Deiner K, Lopez J, Bourne S, Holman LE, Seymour M, Grey EK, Lacoursière-Roussel A, Li Y, Renshaw MA, Pfrender ME, Rius M, Bernatchez L, Lodge DM (2018) Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method. Metabarcoding and Metagenomics 2: e28963. https://doi.org/10.3897/mbmg.2.28963
Profiling tables for all libraries :
Supplementary material 1 from: Deiner K, Lopez J, Bourne S, Holman LE, Seymour M, Grey EK, Lacoursière-Roussel A, Li Y, Renshaw MA, Pfrender ME, Rius M, Bernatchez L, Lodge DM (2018) Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method. Metabarcoding and Metagenomics 2: e28963. https://doi.org/10.3897/mbmg.2.28963
Extraction protocols :
R code and data for "Multiple imputation and direct estimation for qPCR data with non-detects"
<p>R code and data to reproduce figures and tables in the manuscript: Multiple imputation and direct estimation for qPCR data with non-detects.</p>
Figure 2 from: Egizi AM, Robbins RG, Beati L, Nava S, Evans CR, Occi JL, Fonseca DM (2019) A pictorial key to differentiate the recently detected exotic Haemaphysalis longicornis Neumann, 1901 (Acari, Ixodidae) from native congeners in North America. ZooKeys 818: 117-128. https://doi.org/10.3897/zookeys.818.30448
Figure 2 SEM photos of male H.longicornis from a colony started with specimens from Jeju-teukbyeoljachido, Republic of Korea. (Accession # RML48803) a dorsal full body b dorsal capitulum c ventral full body d ventral capitulum.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.