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20,299 results for “Systematic”
FIGURE 5 in Integrative systematics unveils the controversial identity of Engraulidae fishing stocks in a Neotropical estuary, northeast Brazil
FIGURE 5 | Canonical Variables Analysis discriminating for six pilombetas species.
The derivative in economics, a dilemma of understanding: Systematizing experience.
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FIGURE 16 in Systematics of Mendoncia (Acanthaceae: Thunbergioideae) in the Paleotropics
FIGURE 16. Map of Madagascar showing distribution of Mendoncia kely.
The effects of primary or secondary prevention with vitamin A supplementation on clinically important outcomes. A systematic review of randomised clinical trials with meta-analysis and Trial Sequential Analysis
<p>Meta data for the review entitled "The effects of primary or secondary prevention with vitamin A supplementation on clinically important outcomes. A systematic review of randomised clinical trials with meta-analysis and Trial Sequential Analysis<strong>"</strong></p>
Supplementary Material - Uncovering the Effects of Quantum Computing on Software Engineering: A Systematic Mapping
<p>This is the supplementary material regarding: “On the Influence of Quantum Computing on Software Engineering: A Systematic Mapping”, the idea being to make it possible to reproduce the methodology applied in the Systematic Mapping (SM) used in the study. It consists of:</p> <ul> <li>Spreadsheet with the data of the papers selected in each step of the filtering phase of the SM development</li> <li>Fluxogram detailing the Methodology of the SM step-by-step<strong></strong></li> </ul> <h3><strong>Objectives</strong></h3> <p>The main objective of the SM was to provide a detailed analysis on how quantum computing has affected four software engineering topics: Software Testing and Quality; Software Reengineering/Modernization; Software Modeling and Software Processes and Development Platforms</p> <p>Based on the results of such Mapping, four research questions were defined realted to the quantum software engineering topic:</p> <ul> <li> <p>RQ1: <span>How has QC impacted software testing and qual</span><span>ity? This RQ aims to identify proposed methods for </span><span>testing quantum software and topics related to quantum </span><span>metrics and bugs.</span></p> </li> <li> <p>RQ2: How has QC influenced software reengineering and modernization practices? This study seeks to analyze the treatment of reverse engineering and refactorings within this context.</p> </li> <li> <p>RQ3: How is quantum software modeled? This research aims to investigate the impact of QC on modeling languages and the granularity level used.</p> </li> <li> <p>RQ4: How have development processes and platforms been shaped by QC? The goal is to assess the current maturity of processes and platforms for QC.</p> </li> </ul> <h3><strong>Preparation</strong></h3> <p>In this part we outline the resources, digital libraries, the search string and inclusion and exclusion criteria used in this SM on the influence of quantum computing on software engineering.</p> <p>The platform used to manage the articles and define the search string and inclusion and exclusion criteria was Parsifal. In this process articles were sourced from : ACM Digital; IEEE Digital Library; Science Direct and Scopus.</p> <p>A search string was employed in each digital library, adapted to the syntax of each of them, while encompassing the time frame from 01/2018 to 06/2023, with the Base Search String being:</p> <p><strong>(“Software Model” OR “Software Engineering” OR “Software Development” OR “Software Lifecycle” OR “Software Development Methodologies” OR “Software Project Management” OR “Testing” OR “Design Pattern” OR “Reengineering” OR “Reverse Engineering” OR “Metrics” OR “Service-Oriented”) AND (“Quantum Software” OR “Quantum Programming” OR “Quantum Computing” OR “Quantum Software Development” OR “Quantum Subroutine” OR “Quantum Program”)</strong></p> <p>Where the upper part includes terms related to software engineering and the lower part covers the quantum terms.</p> <p>Another important task was to define inclusion and exclusion criteria for filtering the studies, being them:</p> <p><strong>Inclusion Criteria</strong></p> <ul> <li> <p>The study is published in English.</p> </li> <li> <p>The content of the study is related to the topic being analyzed.</p> </li> </ul> <p><strong><strong>Exclusion Criteria</strong></strong></p> <ul> <li> <p>The study is not available</p> </li> <li> <p>The study is duplicated</p> </li> <li> <p>The study is not primary study (surveys, systematic reviews/mappings, talks, proceedings, etc)</p> </li> <li> <p>The content of the study is not related to the theme or it is too superficial.</p> </li> <li> <p>The content of the study was updated in a next more-complete version. When the authors published a new and more complete version of the same content, we remove the previous paper.</p> </li> </ul> <h3><strong>Conduction</strong></h3> <p>During the conduction of the papers filtering process there were four stages to which the set of papers were applied to until reaching the final set:</p> <ul> <li> <p>First stage: Removal of every paper that was duplicated, leaving only one instance of each paper.</p> </li> <li> <p>Second stage: Removal of papers that are not a primary study.</p> </li> <li> <p>Third stage: Removal of papers which keywords, title and abstract are not related to the topics of the Systematic Mapping;</p> </li> <li> <p>Fourth stage: Removal of papers whose content is not related to the topics of the Systematic Mapping.</p> </li> </ul>
Evaluating Software Modelling Recommendations: Towards Systematic Guidelines for Modelling
<p>The dataset contains four supporting documents for the paper title, "Evaluating Software Modelling Recommendations: Towards Systematic Guidelines for Modelling". </p> <p>The first documment is a pdf file containing the student survey questions.</p> <p>The second docummnet is an excel sheet containing the discussion of a focus group study. </p> <p>The third docummet is an excel sheet containing interview transcripts of 4 of the participants of this study (who agreed to publish their statements). We had to modify the transcript and omit a few discussions as it involves iedntification of names. <br><br><br>The final documment is a grading rubric used in one of the courses for grading. </p>
Systematic DFT Modeling van der Waals Heterostructures from a Complete Configurational Basis Applied to γ-PC/WS2
<p>See the paper:</p> <p> </p> <p>Celis, J.; Cao, W. <em>J. Chem. Theory Comput.</em> <strong>2024</strong>, 20, 6, 2377-2389</p>
StArt Protocol for systematic review: Use of CRISPR technology in gene editing for tolerance to biotic factors in plants: A systematic review.
<p>StArt Protocol for systematic review: Use of CRISPR technology in gene editing for tolerance to biotic factors in plants: A systematic review.</p>
Supplementary Material for Requirements documentation containing natural language: A Systematic Tertiary Literature Review
<p>Context: Requirements documentation in natural language has diverse artifacts, but few studies address their suitability to types<br>of requirements or ease of communication.</p> <p>Methods: We conducted a systematic tertiary literature review (STLR) and identified 22 relevant review papers that address natural language artifacts used by practitioners to document software requirements. We also investigated which types of requirements are addressed by artifacts and if there are guidelines for each.</p> <p>Results: A variety of artifacts used for this purpose were identified, of which the most referenced in the literature were diagrams,<br>use cases, conceptual models, user stories, and prototypes. The analysis highlighted that artifacts are applied differently to functional and non-functional requirements. In general, diagrams, use cases, scenarios, and prototypes can be used for both types of requirements, depending on the content (usability, security, etc.). However, user stories and derived artifacts are more recommended for functional requirements and have limitations for non-functional requirements.</p> <p>Conclusion: Furthermore, the study explored different guidelines, structures, and formats used in documentation artifacts, reflecting the diversity in requirements documentation practices in software projects.</p>
Systematic discovery of subcellular RNA patterns in the gut epithelium - Mass spectrometry data
<p>This collection contains the raw data created from the mass spectrometry experiment and the spectral counts that were used in the manuscript for protein abundance comparisons.</p>
Data from: Widely acclaimed but poorly named - phylogeny and systematics of the charismatic African daisy genus Dimorphotheca Vaill. ex Moench (Asteraceae, Calenduleae)
<p>Phylogenetic relationships in the South African daisy genus <em>Dimorphotheca </em>have long been uncertain, with the taxonomy of the genus relying on a few morphological traits, most prominently capitulum sexual system (i.e., cypsela type) and ray colour, which may not be evolutionarily conserved. Here we present the first well-sampled molecular phylogeny of <em>Dimorphotheca</em>, based on nuclear ribosomal (ITS and ETS) and plastid <em>trn</em>L<em>-trn</em>F<em> </em>region DNA sequences from multiple accessions per species. Although the relationships suggested by these markers are broadly congruent, we do find some instances of incongruence which we resolve using a combined decomposition and deletion approach. Using our best estimate of phylogenetic relationships, we reconstruct the evolution of capitulum fertility and ray colour to assess the evolutionary conservatism of these traits and their taxonomic utility. We find support for the monophyly of <em>Dimorphotheca</em>, excluding the recently segregated <em>O. polypterum</em>, and our data thus support the modern, enlarged circumscription of the genus incorporating the former genus <em>Castalis </em>and <em>Osteospermum </em>sections <em>Acanthotheca </em>and <em>Blaxium</em>. Major subclades within <em>Dimorphotheca</em> are largely cohesive in terms of geographic distribution and morphological traits such as growth form and cypsela structure. While many species are resolved as monophyletic, the polyphyly of a few species suggests a need for taxonomic re-evaluation. On the basis of both morphological and molecular data, we describe one new species, and elevate one variety to species level. A full taxonomic key to the enlarged genus is presented for the first time. Ancestral reconstructions show that capitulum sexual system and ray lamina colour are not evolutionarily conserved and that neither can therefore be used to delimit major lineages within <em>Dimorphotheca</em>. While our findings resolve some taxonomic problems, they also highlight the need for further species-level taxonomic work on <em>Dimorphotheca</em>.</p>
Supplementary Material - Systematic Mapping Study - Information and Software Technology
<p>Supplementary material - Article title: "Constructing the graphical structure of expert-based Bayesian networks in the context of software engineering: A systematic mapping study" - Information and Software Technology. This file contains the detailed procedure employed in the systematic mapping.</p>
Supplementary information from: A systematic review of trace elements in the tissues of bats (Chiroptera)
<p>Bats constitute about 22% of known mammal species; they have various ecological roles and provide many ecosystem services. Bats suffer from several threats caused by anthropization, including exposure to toxic metals and metalloids. In our systematic review, we analyzed 75 papers to investigate how species, diet, and tissue type impact bioaccumulation in bat species all over the world. Most studies documented element accumulation in fur, liver, and kidney; at least 36 metals and metalloids have been measured in bat tissues, among the most studied were mercury and zinc. Comparisons with known toxicological thresholds for other mammals showed concerning values for mercury and zinc in bat hair, lead and some essential metals in liver, and iron and calcium in kidneys. Moreover, accumulation patterns in tissues differed depending on bat diet: insectivorous bats showed higher metal concentrations in fur than in liver and kidney while frugivorous species showed higher values in liver and kidney than in fur. This review points out several information gaps in the understanding of metal contamination in bats, including a lack of measured toxicity thresholds specific for bat tissues. Data on trace element bioaccumulation and its associated health effects on bats is important for conservation of bat species, many of which are threatened.</p>
Dataset related to the paper: "Molecular systematics of the subgenus Gephyromantis (Phylacomantis) with description of a new subspecies"
<p>Contains a table with all DNA sequences used as well as information on isolate / specimen voucher information, GenBank accession numbers, and geographical provenance of the samples. Also includes files used for phylogenetic analysis. </p> <p>From the paper:</p> <p>Scherz, M.D., J. Rudolph, M. Rakotondratsima, F.M. Ratsoavina, A. Crottini, F. Andreone, F. Glaw & M. Vences (2024): Molecular systematics of the subgenus <em>Gephyromantis</em> (<em>Phylacomantis</em>) with description of a new subspecies. – <em>Zootaxa</em> <strong>5446</strong>: 205-220.</p> <p>https://doi.org/10.11646/zootaxa.5446.2.3</p>
The Execution Perspective in Software Architecture Descriptions: A Systematic Mapping
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"Systematic Identification of Post-Transcriptional Regulatory Modules": preprocessed data
<p>Processed functional genomic data supplementing the paper "<strong>Systematic Identification of Post-Transcriptional Regulatory Modules"</strong></p>
Dataset about Reproducibility in Software Engineering Research: A Systematic Mapping Study
<p>This artifact contains the results collected in one Systematic Mapping Study (SMS), about Reproducibility in Software Engineering Research. The results are associated with the selected studies and with the research questions considered.</p>
An Analysis of MLOps Architectures: A Systematic Mapping Study
<p>This repository contains all the data, scripts, and documents that can assist the readers in replicating our research.</p> <p>The following are included in this replication package:</p> <p>The folder ‘data’ includes 4 spreadsheet files containing search results (list of initial papers), snowballing results, data extraction, and data synthesis.</p> <p>The ‘documents’ folder contains the research design of this study. The current submission is only a subset of the designed research. The protocol includes a broader scope seeking to synthesize a comprehensive architecture of state-of-the-art of MLOps systems. The current study however represents the structural view of the architecture, (RQ1) of the protocol.</p> <p>All the scripts that help the interested reader to automate parts of the process can be found in the ‘scripts’ folder.</p> <p>To replicate the process one may consult the protocol.</p> <p><strong>Please note that the protocol describes the design of a broader study and only the results of RQ1 in the protocol are presented in this submission.</strong></p>
Fig. 1 in Systematic review of modifiable risk factors shows little evidential support for most current practices in Cryptosporidium management in bovine calves
Fig. 1 Study selection procedure
Data from: Caenorhabditis elegans germ granules accumulate hundreds of low translation mRNAs with no systematic preference for germ cell fate regulators
<p>In animals with germ plasm, embryonic germline precursors inherit germ granules, condensates proposed to regulate mRNAs coding for germ cell fate determinants. In <em>C. elegans</em>, mRNAs are recruited to germ granules by MEG-3, a sequence non-specific RNA-binding protein that forms stabilizing interfacial clusters on germ granules. Using fluorescent <em>in situ </em>hybridization, we confirmed that 441 MEG-3-bound transcripts distribute in a pattern consistent with enrichment in germ granules. 13 are related to transcripts reported in germ granules in <em>Drosophila</em> or <em>Nasonia</em>. The majority, however, are low-translation maternal transcripts required for embryogenesis that are not maintained preferentially in the nascent germline. Granule enrichment raises the concentration of certain transcripts in germ plasm but is not essential to regulate mRNA translation or stability. Our findings suggest that only a minority of germ granule-associated transcripts contribute to germ cell fate in <em>C. elegans</em> and that the vast majority function as non-specific scaffolds for MEG-3.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.