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Trained Random Forest model and scaler parameters on new physical and tsfel features from seismic data of 150s length.
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FIGURE 1 in Description of the female of Labium walkeri Turner & Waterson, 1920 from Australia with new distribution data of L. montivagum (Hymenoptera, Ichneumonidae, Labeninae)
FIGURE 1. Labium walkeri female: A—Habitus (lateral view); B—Head (frontal view); C—Propodeum (dorsal view); D— Head and mesosoma (lateral view); E—Head, mesosoma, and tergites I–II (dorsal view); F—Front wing; G—Metasoma (lateral view). Scale bar: 1 mm (A); 0.5 mm (D–G); 0.2 mm (B–C).
FIGURE 2 in Description of the female of Labium walkeri Turner & Waterson, 1920 from Australia with new distribution data of L. montivagum (Hymenoptera, Ichneumonidae, Labeninae)
FIGURE 2. Labium walkeri male: A—Habitus (lateral view); B—Head (frontal view); C—Metasoma (lateral view); D— Propodeum (dorsal view); E—Wings; F—Head and mesosoma (lateral view); G—Head, mesosoma and metasoma (dorsal view); H—Flagellum. Scale bar: 1 mm (A, G); 0.5 mm (C, E); 0.3 mm (D, F, H); 0.2 mm (B).
FIGURE 3 in Description of the female of Labium walkeri Turner & Waterson, 1920 from Australia with new distribution data of L. montivagum (Hymenoptera, Ichneumonidae, Labeninae)
FIGURE 3. Labium montivagum female: A—Habitus (lateral view); B—Head (frontal view); C—Wings; D—Head and mesosoma (lateral view); E—Empodium and claws of hind leg (arrows). Scale bar: 1 mm (A, C, D); 0.3 mm (B); 0.2 mm (E).
FIGURE 12. Single cladogram recovered for the data from Tables 1–2 in New Species, Host Record, and Male Discovery for Three Messatoporus Cushman (Hymenoptera, Ichneumonidae, Cryptinae) from Brazil
FIGURE 12. Single cladogram recovered for the data from Tables 1–2, using exact search with implicit enumeration (in 15752.34 secs). Score: 98.628
Supplementary Data for "Molecular Docking, ADMET, Synthesis and Evaluation of New Indomethacin Hydrazide Derivatives as Antibacterial Agents"
<p>This supplementary data file contains additional information supporting the findings presented in the research article "<strong>Molecular Docking, ADMET, Synthesis and Evaluation of New Indomethacin Hydrazide Derivatives as Antibacterial Agents</strong>". The data includes:</p> <ul> <li>Infrared (IR) spectra of the synthesized compounds</li> <li>Proton nuclear magnetic resonance (H NMR) spectra of the synthesized compounds</li> <li>Minimum inhibitory concentration (MIC) and zone of inhibition (ZOI) data for the synthesized compounds against tested microorganisms</li> </ul>
FIGURES 9–11 in New data on the systematics and distribution of snout moths of the genus Evergestis Hübner, [1825] in Kyrgyzstan (Lepidoptera: Crambidae)
FIGURES 9–11. Evergestis habitats and shots in nature. 9: type locality of E. radagastalis sp. n. 10: E. radagastalis sp. n. 11: E. grummi (Christoph, 1885).
FIGURES 1–8 in New data on the systematics and distribution of snout moths of the genus Evergestis Hübner, [1825] in Kyrgyzstan (Lepidoptera: Crambidae)
FIGURES 1–8. Evergestis radagastalis sp. n. 1: holotype male. 2: paratype female. 3: male genitalia, frontal view, aedeagus removed, holotype. 4–5: aedeagus, holotype. 6: female genitalia, paratype. 7: apophyses, paratype. 8: bursa copulatrix and signa, paratype. Scale bar: 10 mm for figs 1–2; 1 mm for figs 3, 4, 6; 0.5 mm for figs 5, 7, 8.
FIGURE 2 in New specimens of Helicops boitata (Serpentes: Dipsadidae: Hydropsini), with data on morphological variation and behavior
FIGURE 2. Records of five new specimens of Helicops boitata (black circles), nearly 10 km straight-line distant from the type locality (white triangle), in the influence area of the Bento Gomes River, municipality of Poconé, state of Mato Grosso, Brazil. Cartographic raster modified from MapBiomas 7 Collection.
FIGURE 1 in New specimens of Helicops boitata (Serpentes: Dipsadidae: Hydropsini), with data on morphological variation and behavior
FIGURE 1. Schematic representation of the terrarium in which three alive individuals of Helicops boitata were maintained for observations for three days.
FIGURE 4 in New specimens of Helicops boitata (Serpentes: Dipsadidae: Hydropsini), with data on morphological variation and behavior
FIGURE 4. Behavioral records of individuals of Helicops boitata maintained in captivity during a period of three days. (A) An individual almost completely buried in the sand of the terrarium, keeping only the head above the surface; (B) two individuals exhibiting the upright posture of the snout, leaning the trunk to a nearly 90° position above the water surface; (C) an individual swimming in open water; (D) detail of the emerging head of an individual in the upright posture of the snout.
FIGURES 19–22 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURES 19–22. Habitats of the new subspecies and adult in nature. 19–20—type locality, Iran, Esfahan Prov., 20 km E Abyaneh vill., 27–29.V.2014 (photo: A. Naderi); 21—Ph. t. flamma ssp. n., adult male on a flower of Acantholimon sp. in the type locality, 27–29.V.2014 (photo: A. Naderi); 22—habitat of the new subspecies, gorge along the Kashan-Meymeh road E Jevinan (Esfahan Prov.), dry riverbeds and slopes with Atraphaxis bushes, 17.VII.2009 (photo: V. Lukhtanov).
FIGURE 18 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURE 18. Distribution of Phoenicurusia transcaucasicus based on examined specimens and published data (Hesselbarth et al. 1995; Tshikolovets & Nekrutenko 2012; Tshikolovets et al. 2014; Krupitsky 2017). Red, nominotypical subspecies; orange, Ph. t. flamma ssp. n.; yellow, Ph. t. ssp. Squares refer to type localities. 1—Armenia, 2—Azerbaijan.
FIGURE 17 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURE 17. Result of the statistical parsimony network analysis illustrating relationships of 11 COI sequences of Phoenicurusia transcaucasicus. Colours of circles correspond to origin of samples.
FIGURES 7–13 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURES 7–13. Male genitalia of Phoenicurusia transcaucasicus. 7—paratype, voucher VNBM1144-21, lateral view; 8— paratype, voucher LYC025, lateral view; 9—id., labides and falces, ventral view; 10—id., aedeagus, lateral view; 11—valvae with juxta, inner view; 12— Ph. t. transcaucasicus, neotype, lateral view; 13— id., aedeagus, lateral view.
FIGURES 5–6. Phoenicurusia transcaucasicus transcaucasicus. 5 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURES 5–6. Phoenicurusia transcaucasicus transcaucasicus. 5—neotype, ♂, Turkey, Kars Prov., 6 km E Kagyzman, Akçay vill., 1500–1700 m, 22.VII.1977, leg. Eckweiler (ZMMU); 6—♂, same locality as in the neotype, 22–28.VII.1976, leg. Eckweiler, coll. A. Krupitsky.
FIGURES 14–16 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURES 14–16. Diagnostic characters of the new subspecies compared to Ph. phoenicurus and Ph. balucha. 14—paratype, ♂, voucher VNMB1129-21, Mazandaran Prov., Baladeh vill., 2400 m, 13–15.VII.2006; 15—Ph. phoenicurus, Iran, Semnan Prov., Shahrud, Takar vic., 2100 m, 12.VI.2009; 16—Ph. balucha athamantides, Iran, Kerman Prov., 20 km SE Makhan, 2450 m, 19.VI.2014.
FIGURES 1–4. Phoenicurusia transcaucasicus flamma ssp. n. 1 in New data on distribution of Phoenicurusia transcaucasicus (Miller, 1923) (Lepidoptera, Lycaenidae) with description of a new subspecies from Iran
FIGURES 1–4. Phoenicurusia transcaucasicus flamma ssp. n. 1—male, holotype; 2—male, paratype, voucher LYC025, Iran, Semnan Prov., Sefid-Kuh Mts., Shahmirzad area, Chashm v. vicinity, 2200 m, 05–06.VII.2010, 35°48'59"N 53°14'46"E, K. Kolesnichenko leg., coll. A. Krupitsky; 3—paratype, female, same data as holotype, leg. et coll. A.R. Naderi. 4—paratype, female, Iran, Esfahan Prov., 25 km E Daran, 2400 m, 27.VI.2008, leg. et coll. A.R. Naderi.
Genetic datasets, climatic conditions at sampled localities, and occurrence data to: Ice age-driven range shifts of diploids and expanding autotetraploids within a conserved niche (Grünig, Patsiou & Parisod, 2024, New Phytologist)
<div> <h3><strong>This repository includes</strong></h3> - An overview of the raw sequencing reads deposited in the European Nucleotide Archive (ENA) for the 370 individuals sampled in 17 diploid and 19 tetraploid field populations <div>- Scripts used to genotype diploids and autotetraploids samples of <em>Biscutella laevigata</em> from ddRADseq data</div> <div>- Input data (as vcf format) used in population genetic analyses</div> <div>- Scripts used to run the different genetic analyses</div> <div>- Dataset of extracted climatic conditions at sampled localities</div> <div>- Occurrence dataset used for the climatic niche modelling</div> <br> <h3><strong>Description of the data and file structure</strong></h3> <strong>00.ENA_samples_correspondance.txt: </strong>provides ENA project ID, run ID (i.e. raw fastq files), sample ID, and alias for each sample included in the study.<br> <div> </div> <div><strong>1.scripts_reads_to_vcf.zip:</strong> consists of the following:</div> - <strong>1.reads_to_vcf.md: </strong>md file with scripts documenting the read quality check, demultiplexing, mapping, SNP calling using GATK4, and filtering steps<br> <div>- Additional scripts called within <strong>1.reads_to_vcf.md</strong>:</div> <div>-- 1.3. Mapping: <strong>02_run_mapping_XXX.py</strong> and <strong>BWA-mem_bisc1_sg.py</strong> scripts</div> <div>-- 1.4.a. HaplotypeCaller: <strong>03_V1_gvcf.py</strong></div> <div>-- 1.4.b. GDBI + genotypeGVCF: <strong>03_V3_gdbi_genotype_per100scaf.py</strong></div> <br> <div><strong>2.datasets_genetics.tar.gz</strong> consists of the following</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30.vcf.gz</strong>: "Initial SNPs dataset" = biallelic SNPs fulfilling GATK quality hard filtering recommendations, present in at least 50% of samples. Genotypes with DP<15 for diploids and DP<30 for tetraploids are set to no-call. This vcf was used as basis for fastsimcoal dataset preparation, and as basis for subsequent selection of loci fulfilling requirements of each analysis. It includes 2246701 biallelic SNPs for 370 samples</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD05_pruned.vcf.gz:</strong> subset of the "Initial SNPs dataset" retaining SNPs called in at least 50% of samples, and pruned for Linkage disequilibrium. This vcf includes 107574 biallelic SNPs for 370 samples and was used in the analysis of the proportion of diploids diagnostic alleles shared by tetraploids.</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD01_pruned.vcf.gz: </strong>subset of the "Initial SNPs dataset", retaining SNPs called in at least 90% of samples, and pruned for Linkage disequilibrium. This vcf includes 4444 biallelic SNPs for 370 samples and was used in the analyses of Population diversity and differentiation (SpaGeDi, GenoDive, PCA), and f3-statistics.</div> <br> <div>- <strong>bisc_all370_diminDP15_tetraminDP30_MD0.1_pruned_MAC3rm.vcf.gz:</strong> subset of the "Initial SNPs dataset", retaining SNPs called in at least 90% of samples, pruned for Linkage disequilibrium, and with a minor allele count of 3. This vcf includes 2593 biallelic SNPs for 370 samples and was used in STRUCTURE analysis</div> <br><br> <div><strong>3.pres_2x.txt:</strong> list of the 128 diploid occurrences used in climatic niche modelling</div> <br> <div><strong>3.pres_4x_strat_reg.txt:</strong> list of the 924 tetraploid occurrences used in climatic niche modelling</div> <br> <div><strong>biscall_chelsa_ordered_noDEM.txt:</strong> climatic data extracted from the CHELSA dataset at sampled localities</div> <br> <div><strong>4.plot_GTfreqs.md:</strong> markdown file including scripts to plot allele and genotype frequencies</div> <br> <div> </div> <h3><strong>Sharing/Access information</strong></h3> Raw sequencing reads have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under the accession number PRJEB48869:<a href="https://www.ebi.ac.uk/ena/browser/view/PRJEB48869"> https://www.ebi.ac.uk/ena/browser/view/PRJEB48869</a></div>
Raw Data Archive for "A New Cross-Calibration Algorithm for Multi-Mode Secondary Electron Multiplier Detectors"
<p>Raw Thermo Element XR data files for use with the Enhanced Linear Dynamic Range (ELDR) Model. The model inverts raw pulse and analog data from the Element 2/XR inductively coupled plasma mass spectrometer to estimate detector cross-calibration, linear-in-time cross-calibration drift, and detector non-linearity. This data archive contains the raw data comprising 1572 individual laser ablation analyses. Each analysis consists of two files: (1) raw data archive (.dat); and (2) setup information file <em>(</em>.inf). The analytical session is divided into three sequences: SEQ1, SEQ2, SEQ3.</p> <p> </p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.