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DNA_test_129_Preprocessing_using_AlphaFold2
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Supplementary material 1 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Video 1. A close encounter with the deep-sea ascidian
Supplementary material 2 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Video 2. Grabbing the ascidian with the manipulator of Shinkai 6500
Figure 5 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Figure 5 Phylogenetic relationship of 28 ascidian species; a Maximum-Likelihood tree, based on a concatenated dataset consisting of 18S rRNA (1676 bp) and COI (1136 bp) genes. Bootstrap values and posterior probabilities are indicated if they are higher than 60% and 0.70, respectively. Macrophagous species are indicated with an asterisk (*).
Figure 4 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Figure 4 Fimbrora calsubia Monniot & Monniot, 1991a (JAMSTEC No. 111618), photographs of fixed specimen. A. Sinistero-posterior portion of body, viewed from outside, showing alimentary canal and reproductive system; B. Cross section of stomach, showing the prey crustacean (probably a copepod); arrows indicating stomach folds; C. Gonads; D. Magnification of the rectangle on C, showing an ovary containing multiple eggs.
Figure 3 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Figure 3 Fimbrora calsubia Monniot & Monniot, 1991a (JAMSTEC No. 111618). A. Drawing of dissected specimen, showing the shape of neural-gland aperture, peripharyngeal band and dorsal lamina; B. Photograph of dissected pharynx cut open from ventral side; C. Magnification of the rectangle on B, showing the arrangement of longitudinal vessels, transverse vessels, stigmata and secondary branchial papillae (indicated with arrows).
Figure 2 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Figure 2 Fimbrora calsubia Monniot & Monniot, 1991a, photographs showing external appearance of JAMSTEC No. 111618. A. The individual in situ (white arrow), attaching to a dead sponge (yellow arrowhead) along with a euplectellid glass sponge (yellow arrow); B. Left view in life; C. Inner surface of the oral siphon in fixed state; D. Enlarged view of atrial siphon in life.
Figure 1 from: Hasegawa N, Hookabe N, Fujiwara Y, Jimi N, Kajihara H (2024) Supplemental re-description of a deep-sea ascidian, Fimbrora calsubia (Ascidiacea, Enterogona), with an inference of its phylogenetic position. Zoosystematics and Evolution 100(1): 129-140. https://doi.org/10.3897/zse.100.113132
Figure 1 Maps showing the sampling site (red circle), south of Houei Seamount (of which the top is indicated with a red triangle). The images were generated by using GMT 6 (Wessel et al. 2019), based on grid data provided by the General Bathymetric Chart of the Oceans.
Figure 8 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 8 Rhopalothrix mariaemirae sp. nov. paratype worker (CBUMAG:ENT:35950) A full-face view B lateral view C mandible distinguishing the teeth of the apical fork; drawing inserted showing the arrangement of the teeth of the apical fork of the mandible D dorsal view. Scale bars: 0.3 mm.
Figure 6 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 6 Rhopalothrix isthmica worker (IAvH-E-172166) A full-face view B lateral view C mandible distinguishing the teeth of the apical fork; drawing inserted showing the arrangement of the teeth of the apical fork of the mandible D dorsal view. Scale bars: 0.3 mm.
Figure 10 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 10 Rhopalothrix weberi worker (IAvH-E-233235). A full-face view B lateral view C mandible distinguishing the teeth of the apical fork; drawing inserted showing the arrangement of the teeth of the apical fork of the mandible D dorsal view. Scale bars: 0.3 mm.
Figure 5 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 5 Rhopalothrix ciliata worker (ICN80314) A full-face view B lateral view C dorsal view. Scale bars: 0.2 mm.
Figure 1 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 1 Measurements recorded in the habitus of Rhopalothrix worker. Definitions of the acronyms are described in Material and methods.
Figure 4 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 4 Rhopalothrix ciliata worker (CBUMAG:ENT:35948) A full-face view B lateral view C mandible distinguishing the teeth of the apical fork; drawing inserted showing the arrangement of the teeth of the apical fork of the mandible D dorsal view. Scale bars: 0.3 mm (A, D); 0.5 mm (B).
Figure 3 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 3 Rhopalothrix amati paratype worker (IAvH-55018) A full-face view B lateral view C dorsal view D portion of the head viewed obliquely showing the mandibles and the apical fork of the left mandible; the black arrow points to the subapical tooth while the white one points to the apical tooth of the apical fork of the mandible. Scale bars: 0.2 mm.
Figure 7 from: Guerrero RJ, Grajales-Andica AF, Fernández F, Tocora MC, Fiorentino G, García DR (2024) The ants of the genus Rhopalothrix Mayr, 1870 (Hymenoptera, Formicidae, Myrmicinae) in Colombia. ZooKeys 1191: 129-150. https://doi.org/10.3897/zookeys.1191.110418
Figure 7 Rhopalothrix mandibularis sp. nov. Holotype worker (CBUMAG:ENT:35947) A full-face view B lateral view C mandible distinguishing the teeth of the apical fork; drawing inserted showing the arrangement of the teeth of the apical fork of the mandible D dorsal view. Scale bars: 0.5 mm.
FIGURE 129 in Review of the genus Daidalotarsonemus De Leon (Acari: Prostigmata: Tarsonemidae)
FIGURE 129. Ventral surface of Daidalotarsonemus vandevriei Suski, 1967 (male).
Figure 4 from: Vadthanarat S, Raghoonundon B, Lumyong S, Raspé O (2024) Rostrupomyces, a new genus to accommodate Xerocomus sisongkhramensis, and a new Hemileccinum species (Xerocomoideae, Boletaceae) from Thailand. MycoKeys 103: 129-165. https://doi.org/10.3897/mycokeys.103.107935
Figure 4 Microscopic features of Rostrupomyces sisongkhramensisA basidiospores B basidia C cheilocystidia D pleurocystidia E pileipellis F stipitipellis showing a cluster of narrowly clavate to clavate cells which slightly scattered on the stipe surface. Scale bars: 10 µm (A–D); 25 µm (D–E); 50 µm (E–F). All line drawings were made from SV0155.
Figure 7 from: Vadthanarat S, Raghoonundon B, Lumyong S, Raspé O (2024) Rostrupomyces, a new genus to accommodate Xerocomus sisongkhramensis, and a new Hemileccinum species (Xerocomoideae, Boletaceae) from Thailand. MycoKeys 103: 129-165. https://doi.org/10.3897/mycokeys.103.107935
Figure 7 Microscopic features of Hemileccinum inferiusA basidiospores B basidia C cheilocystidia D pleurocystidia E pileipellis F stipitipellis showing a cluster of clavate to boardy clavate like cells which moderately scattered on the stipitipellis. Scale bars: 10 µm (A–D); 25 µm (D–E); 50 µm (E–F). All drawings were made from holotype type (SV0282).
Figure 5 from: Vadthanarat S, Raghoonundon B, Lumyong S, Raspé O (2024) Rostrupomyces, a new genus to accommodate Xerocomus sisongkhramensis, and a new Hemileccinum species (Xerocomoideae, Boletaceae) from Thailand. MycoKeys 103: 129-165. https://doi.org/10.3897/mycokeys.103.107935
Figure 5 Scanning electron micrographs of basidiospores A–BRostrupomyces sisongkhramensis (SV0155) C–DHemileccinum inferius (SV0282).
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