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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [Cut&Run]
GEO Series GSE234288. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis
GEO Series GSE201822. Homo sapiens. 60 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells
GEO Series GSE205083. Mus musculus. 56 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo
GEO Series GSE116857. Mus musculus; Macaca mulatta; Homo sapiens. 31 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation
GEO Series GSE169561. Mus musculus. 42 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
ChIP-Seq based CTCF binding profiling of naïve B-cells from CTCFfl/fl; CD19-Creki/+ or CTCFfl/+; CD19-Creki/+ mice.
GEO Series GSE207638. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [ChIP-seq_set3]
GEO Series GSE190989. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [HTGTS-VDJ-Seq]
GEO Series GSE287940. Mus musculus. 34 samples. Type: Other.
A negatively-charged region within C-terminal domain maintains proper CTCF DNA binding (ChIP-Seq)
GEO Series GSE261210. Homo sapiens. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiple CTCF sites contribute to stable enhancer-promoter interactions in the β-globin locus
GEO Series GSE164288. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [nCATS]
GEO Series GSE272482. Mus musculus. 1 samples. Type: Other.
Dynamic CTCF occupancy during differentiation rewires cis-regulatory module interactions essential for development [ATAC-seq]
GEO Series GSE131053. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis [H2_HiC]
GEO Series GSE201820. Homo sapiens. 8 samples. Type: Other.
CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis
GEO Series GSE282833. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide profiling of histone modification H3K27ac and CTCF transcription factor binding in Rett syndrome iPS cells
GEO Series GSE308264. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [3C-HTGTS]
GEO Series GSE142778. Mus musculus. 24 samples. Type: Other.
Rapid depletion of the cohesin subunits and CTCF reveals their role in maintaining high-order genome architecture [ChIP-seq]
GEO Series GSE181847. Mus musculus. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries
GEO Series GSE110460. Mus musculus. 2 samples. Type: Methylation profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [ChIP-seq]
GEO Series GSE243710. Mus musculus. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Acute depletion of CTCF rewires genome-wide chromatin accessibility
GEO Series GSE153237. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.