Find research datasets worth reusing

opencc-by-4.0Mar 2018View details →

Fig. 2 in The true generic identity of Mastigoproctus pelegrini Armas, 2000: a new genus of Antillean whipscorpions (Thelyphonida: Thelyphonidae)

Fig. 2. Adults of Sheylayongium pelegrini comb. n. from Minas de Matahambre, Pinar del Río; male from Sierra del Sumidero (left) and female from Sierra de Mesa (right), close-up of left pedipalp: a) dorsal; b) ventral.

opencc-by-4.0Aug 2024View details →

Generic and ML Workloads in an HPC Datacenter

<p>Updated Version of the <a title="previous upload" href="../records/13625495">previous upload</a>, adjusts node timestamps lacking behind at the beginning of the data collection.</p> <p>This archive contains hardware and workload traces from SURF Lisa, a Dutch datacenter consisting of 338 nodes, used by universities and researchers for various jobs. Around 85% of the nodes are equipped only with CPUs, handling generic compute-heavy workloads, the other 15% come with additional GPUs, serving as accelerators for Machine Learning (ML) jobs. Individual node hardware configurations are listed in `node_hardware_info.parquet`.</p> <p>Jobs within Lisa are submitted over the SLURM scheduler, where we logged job start and end time, resource allocation, and exit state for roughly 10 months (December 2021 to November 2022). This data saved in `slurm_table_cleaned.parquet`.</p> <p>Addidionally, we provide detailed Prometheus monitoring logs from all nodes over a timespan of 5 months (June 2022 to November 2022) in `prom_table_cleaned.parquet`. These logs contain over 90 attributes, including CPU/GPU power and temperatures, network I/O, memory and storage usage, and many more. These metrics are sampled at 30s intervals, resulting in a total of almost 130 million records across all nodes.</p> <p>Finally, job and node data are provided as a joined dataset in `prom_slurm_joined.parquet` for their 4 months of overlapping timespan. This combined data can provide more insights into the resource consumption and performance patterns of jobs.</p> <p>We conducted detailed analysis of this data where we specifically looked at the different characteristics of generic vs. ML workloads in a heterogeneous HPC environment. The pre-print of our analysis work can be found on <a href="https://arxiv.org/abs/2409.08949">arXiv</a>. Our code used for evaluation can be found on <a href="https://github.com/atlarge-research/2024-icpads-hpc-workload-characterization">GitHub</a>.<br><br></p> <table> <tbody> <tr> <th>Dataset Name</th> <th>Explanation</th> </tr> <tr> <td>slurm_table_cleaned.parquet</td> <td>Job data collected by SLURM</td> </tr> <tr> <td>prom_table_cleaned.parquet</td> <td>Node data collected by Prometheus</td> </tr> <tr> <td>prom_slurm_joined.parquet</td> <td>Joined Job and Node dataset</td> </tr> <tr> <td>node_hardware_info.parquet</td> <td>Hardware configurations of each node</td> </tr> </tbody> </table>

Figure 6 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis

Figure 6. Position of Petalocladius (marked in red) in the phylogenetic tree of Orthocladiinae, reconstructed with Bayesian inference (all posterior probabilities of the nodes are displayed, regardless of the value). This is a majority rule consensus tree based on morphology only.

Figure 7 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis

Figure 7. Rouge plot of the frequency of placement of Petalocladius on a Bayesian tree from Fig. 6, based on the frequency of occurrence of Petalocladius in a given node, based on 50001 most congruent trees from the Bayesian analysis of the genus's morphology.

Figure 3 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis

Figure 3. Petalocladius dominiensis Andersen & Baranov sp. n., male. A. Hypopygium, dorsal view. B. Inferior volsella. C. Apex of gonostylus, showing the megaseta.

Figure 5 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis

Figure 5. The male of Petalocladius setosus Sublette & Wirth, 1972. A. Head. B. Thorax. C. Wing. D. Hypopygium, dorsal view. E. Inferior volsella. F. Apex of gonostylus. Photos: David Pecor, Smithsonian Institution.

Figure 1 in A New Species Of Petalocladius Sublette & Wirth, 1972 (Diptera, Chironomidae, Orthocladiinae) From The Dominican Republic, With An Emended Generic Diagnosis

Figure 1. Petalocladius dominiensis Andersen & Baranov sp. n., male. A. Palp. B. Thorax. C. Hypopygium, dorsal view. D. Hypopygium, ventral view.

opencc-by-4.0Oct 2024View details →

Generic residue numbering of the GAIN domain of adhesion GPCRs

<p>The dataset corresponding to the publication:</p> <ul> <li>Generic residue numbering of the GAIN domain of adhesion GPCRs <div> <div>Florian Seufert, Guillermo Pérez-Hernández, Gáspár Pándy-Szekeres, Ramon Guixà-González, Tobias Langenhan, David E. Gloriam, Peter W. Hildebrand</div> <div>ReasearchSquare</div> <div><a href="https://doi.org/10.21203/rs.3.rs-4761600/v1" rel="nofollow">https://doi.org/10.21203/rs.3.rs-4761600/v1</a></div> </div> </li> </ul> <p>The archive consists of three files:</p> <ul> <li>gaingrn_data.tgz</li> </ul> <p>Contains the underlying data and object structures for the GAIN-GRN creation process and the python package availabe in <a title="repo" href="https://github.com/FloSeu/GAIN-GRN" target="_blank" rel="noopener">https://github.com/FloSeu/GAIN-GRN</a>. This can be downloaded manually and extracted in the respective GAIN-GRN/ directory or automatically retrieved via a dedicated function</p> <ul> <li>agpcr_gains.tgz</li> </ul> <p>Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each adhesion GPCR GAIN domain, named by its UniProt accession number.</p> <ul> <li>pkd_gains.tgz</li> </ul> <p>Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each polycystic kidney disease (PKD1) / PKD1-like 1 protein (PKD1L1) GAIN domain, named by its UniProt accession number.</p>

Linked collectors and determiners for: The spider family Micropholcommatidae (Arachnida: Araneae: Araneoidea): a relimitation and revision at the generic level.

Natural history specimen data linked to collectors and determiners held within, "The spider family Micropholcommatidae (Arachnida: Araneae: Araneoidea): a relimitation and revision at the generic level". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/4db6b327-7482-432e-a5f6-36f91c79fef3">https://bionomia.net/dataset/4db6b327-7482-432e-a5f6-36f91c79fef3</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/4db6b327-7482-432e-a5f6-36f91c79fef3">https://gbif.org/dataset/4db6b327-7482-432e-a5f6-36f91c79fef3</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Diversification in the mountains: a generic reappraisal of the Western Ghats endemic gecko genus Dravidogecko Smith, 1933 (Squamata: Gekkonidae) with descriptions of six new species.

Natural history specimen data linked to collectors and determiners held within, "Diversification in the mountains: a generic reappraisal of the Western Ghats endemic gecko genus Dravidogecko Smith, 1933 (Squamata: Gekkonidae) with descriptions of six new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/39d89261-8d8c-478d-92fe-1841bec00e5a">https://bionomia.net/dataset/39d89261-8d8c-478d-92fe-1841bec00e5a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/39d89261-8d8c-478d-92fe-1841bec00e5a">https://gbif.org/dataset/39d89261-8d8c-478d-92fe-1841bec00e5a</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Revision of the Bee Genus Chlerogella (Hymenoptera, Halictidae), Part II: South American Species and Generic Diagnosis.

Natural history specimen data linked to collectors and determiners held within, "Revision of the Bee Genus Chlerogella (Hymenoptera, Halictidae), Part II: South American Species and Generic Diagnosis". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/18d263ac-9913-4f11-843c-862ca11a38e6">https://bionomia.net/dataset/18d263ac-9913-4f11-843c-862ca11a38e6</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/18d263ac-9913-4f11-843c-862ca11a38e6">https://gbif.org/dataset/18d263ac-9913-4f11-843c-862ca11a38e6</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Generic changes in the stag beetle tribe Aesalini (Coleoptera: Lucanidae: Aesalinae) with the description of two new species.

Natural history specimen data linked to collectors and determiners held within, "Generic changes in the stag beetle tribe Aesalini (Coleoptera: Lucanidae: Aesalinae) with the description of two new species". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f1bbeff3-8e8b-408c-a46c-11595dcf1560">https://bionomia.net/dataset/f1bbeff3-8e8b-408c-a46c-11595dcf1560</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f1bbeff3-8e8b-408c-a46c-11595dcf1560">https://gbif.org/dataset/f1bbeff3-8e8b-408c-a46c-11595dcf1560</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Generic Review of New Zealand Chrysomelinae (Coleoptera: Chrysomelidae).

Natural history specimen data linked to collectors and determiners held within, "Generic Review of New Zealand Chrysomelinae (Coleoptera: Chrysomelidae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6ddefedb-deb0-4021-b4c7-b3e789bc0651">https://bionomia.net/dataset/6ddefedb-deb0-4021-b4c7-b3e789bc0651</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6ddefedb-deb0-4021-b4c7-b3e789bc0651">https://gbif.org/dataset/6ddefedb-deb0-4021-b4c7-b3e789bc0651</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Morphological revision of the hyperdiverse Brueelia - complex (Insecta: Phthiraptera: Ischnocera: Philopteridae) with new taxa, checklists and generic key.

Natural history specimen data linked to collectors and determiners held within, "Morphological revision of the hyperdiverse Brueelia - complex (Insecta: Phthiraptera: Ischnocera: Philopteridae) with new taxa, checklists and generic key". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d8cc2cd8-8410-49aa-a75d-7a41d9f52b26">https://bionomia.net/dataset/d8cc2cd8-8410-49aa-a75d-7a41d9f52b26</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d8cc2cd8-8410-49aa-a75d-7a41d9f52b26">https://gbif.org/dataset/d8cc2cd8-8410-49aa-a75d-7a41d9f52b26</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: The South American spider genera Mesabolivar and Carapoia (Araneae, Pholcidae): new species and a framework for redrawing generic limits.

Natural history specimen data linked to collectors and determiners held within, "The South American spider genera Mesabolivar and Carapoia (Araneae, Pholcidae): new species and a framework for redrawing generic limits". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/8bee84d8-4a01-4e53-8eb3-af176ce1feb9">https://bionomia.net/dataset/8bee84d8-4a01-4e53-8eb3-af176ce1feb9</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/8bee84d8-4a01-4e53-8eb3-af176ce1feb9">https://gbif.org/dataset/8bee84d8-4a01-4e53-8eb3-af176ce1feb9</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Tersilochinae (Hymenoptera: Ichneumonidae) from New Zealand. Part 1. Generic key and three new genera.

Natural history specimen data linked to collectors and determiners held within, "Tersilochinae (Hymenoptera: Ichneumonidae) from New Zealand. Part 1. Generic key and three new genera". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/838f8359-cca5-45ee-93d3-ef2640be64fe">https://bionomia.net/dataset/838f8359-cca5-45ee-93d3-ef2640be64fe</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/838f8359-cca5-45ee-93d3-ef2640be64fe">https://gbif.org/dataset/838f8359-cca5-45ee-93d3-ef2640be64fe</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Redescription and generic placement of the spider Cryptachaea gigantipes (Keyserling, 1890) (Araneae: Theridiidae) and notes on related synanthropic species in Australasia.

Natural history specimen data linked to collectors and determiners held within, "Redescription and generic placement of the spider Cryptachaea gigantipes (Keyserling, 1890) (Araneae: Theridiidae) and notes on related synanthropic species in Australasia". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6b412b2d-0955-4b92-b5f5-1d1d04ed3b47">https://bionomia.net/dataset/6b412b2d-0955-4b92-b5f5-1d1d04ed3b47</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6b412b2d-0955-4b92-b5f5-1d1d04ed3b47">https://gbif.org/dataset/6b412b2d-0955-4b92-b5f5-1d1d04ed3b47</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: A Gondwanan concept of Simplimorpha Scoble (sensu lato): a step toward clarity in the generic diagnostics of global Nepticulidae (Lepidoptera).

Natural history specimen data linked to collectors and determiners held within, "A Gondwanan concept of Simplimorpha Scoble (sensu lato): a step toward clarity in the generic diagnostics of global Nepticulidae (Lepidoptera)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/3dad7d04-f7c6-4300-9240-8f2e44d0c257">https://bionomia.net/dataset/3dad7d04-f7c6-4300-9240-8f2e44d0c257</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/3dad7d04-f7c6-4300-9240-8f2e44d0c257">https://gbif.org/dataset/3dad7d04-f7c6-4300-9240-8f2e44d0c257</a>. Formatted as a Frictionless Data package.

Linked collectors and determiners for: Doomed to a vile lot: new taxa, notes, and an updated generic key for the Old World corsairs (Heteroptera: Reduviidae: Peiratinae).

Natural history specimen data linked to collectors and determiners held within, "Doomed to a vile lot: new taxa, notes, and an updated generic key for the Old World corsairs (Heteroptera: Reduviidae: Peiratinae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/0ffab461-7a40-4216-88cf-a1727e05ccdf">https://bionomia.net/dataset/0ffab461-7a40-4216-88cf-a1727e05ccdf</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/0ffab461-7a40-4216-88cf-a1727e05ccdf">https://gbif.org/dataset/0ffab461-7a40-4216-88cf-a1727e05ccdf</a>. Formatted as a Frictionless Data package.