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4,144 results for “ITS barcode”
Fig. 1 in PhyloCode und DNA Barcoding - Taxonomische Regeln und Techniken im Wandel?
Fig. 1: Die phylogenetische Verwandtschaft der Arten a bis g, der monophyletischen Untergattungen A bis C und der monophyletischen Gattung X, dargestellt als Kladogramm.
Figure 1 in The first DNA barcodes for the Australian platypus tick Ixodes ornithorhynchi Lucas, 1846 (Acari: Ixodidae) to facilitate conservation efforts for a declining parasite and its host
Figure 1 Ventral view of Ixodes ornithorhynchi specimens from which DNA barcodes were generated. A – Adult female; B – Nymph.
Fig. 16. Leuckartiara longicalcar, n in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 16. Leuckartiara longicalcar, n. spec., living animal, height 13-18 mm, photographed by Kevin Lee off Los Angeles, California, USA. Note, this photograph is copyright protected and permission to use it here has been obtained by paying a royalty fee to the author and copyright holder Kevin Lee (www.diverkevin.com).
Fig. 13 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 13. Catablema cf. multicirrata, living subadult specimen from Svalbard (sample DNA 1139), photo courtesy of Aino Hosia. Note the high number of tentacles, estimated about 140 combined with the moderate size of the bell.
Fig. 11 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 11. Catablema vesicarium nodulosum, living medusa from Friday Harbor, WA, USA, bell height about 2 cm, the individual was used to obtain one of the DNA sequences of this study.
Fig. 10 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 10. Neoturris breviconis, living individuals from Friday Harbor, USA. (A) Fully grown animal without apical process, height approximately 3-4 cm. (B) Tentacle bases, note abaxial spurs and the absence of ocelli. (C) Smaller animal than shown in A (not to scale) with an apical process. (D) Medusa of with dark pigment in gonad region. The H-form of the gonad-bearing part of the manubrium is rather characteristic, but only temporary as due to contraction. This H-shape of the gonads is reminiscent of some Leuckartiara species. (E) Same specimen as in D seen from aboral side. Note that the gonadal pits are more numerous and much better seen in this view.
Fig. 9 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 9. COI maximum likelihood phylogenetic tree of Pandeidae species obtained with PhyML (GTR+G+I model) and based on 664 bp positions of the mitochondrial COI gene. Node-support values are bootstrap values of 100 pseudoreplicates (shown only if> 70%). For more details see text and Table 1. Samples based on the polyp stage are indicated, all others are medusa samples.
Fig. 12 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 12. Catablema multicirratum, living medusa from Friday Harbor, WA, USA, bell size about 6.5 cm, about 100 tentacles. The individual was used to obtain the DNA sequences of this study (DNA 868, see Table 1). (A) Whole medusa. The circular spot on the apical process is an area where the epidermis is lost due to contact with the water-air interface. (B) Detail of stomach with gonad folds. (C) Detail of umbrella margin with tentacles.
Fig. 5 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 5. Neoturris abyssi (=Neoturris pileata), living medusa from the Swedish coast, photo taken by Fredrik Pleijel and reproduced with the permission of the author. The manubrium is contracted, feigning a horizontal gonadal fold on the manubrium resembling the permanent one seen in some Leuckartiara species. This photo is copyright protected and it must not be reproduced without the consent of the author.
Fig. 4 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 4. Neoturris abyssi (=Neoturris pileata) medusae from Norway, photographs of the most advanced stages found. (A) Lateral view of manubrium of a medusa with bell size 9 mm (DNA 918, see Table 1). No gametes could be seen when examining the gonad fold under a compound microscope. (B) Manubrium of a medusa with bell size 12 mm (DNA 916, see Table 1); note the increased number of gonadal folds and pits. Small oocytes were present in the gonads folds. Except for the colour this animal closely resemble Mediterranean specimens (Figs 6-7). (C) Medusa of about 10 mm height (DNA 919, see Table 1) cut open and spread to visualise anatomical details (inner side of stomach facing observer).
Fig. 3 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 3. Neoturris abyssi (=Neoturris pileata) medusae from Norway, photographs of living, relatively young stages. (A) Lateral view of medusa with bell size 7 mm (DNA 953, see Table 1). (B) Same as A, detail of radial canals and folds of stomach wall. (C) Same as A, oblique view from below. (D) Animal of bell size 9 mm, detail of tentacle bases, note the absence of ocelli.
Fig. 2 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 2. Neoturris abyssi (=Neoturris pileata), preserved polyp specimens from Norway, Bergen area, Hauglandsosen. (A) MHNG-INVE-54695 on Nucula spec. (B) MHNG-INVE-62572, on a scaphopod, (DNA 695, see Table 1).
Fig. 17 in DNA barcoding of some Pandeidae species (Cnidaria, Hydrozoa, Anthoathecata)
Fig. 17. Leuckartiara spec., living animal. (A) Whole medusa. (B) Bell margin with tentacle bases. (C) Details of manubrium with gonad folds (immature?).
Barcode of Life Data Systems: BOLDS main resource (81) DwCA
<p>http://www.boldsystems.org/. The Barcode of Life Data Systems (BOLD), is a web platform that provides an integrated environment for the assembly and use of DNA barcode data. It delivers an online database for collection and management of specimen, distributional, and molecular data as well as analytical tools to support their validation. Over the past few years, BOLD has grown to become a powerful online workbench and the central informatics hub of the DNA barcoding community. BOLD is freely available to any researcher with interests in DNA Barcoding. By providing specialized services, it aids in the publication of records that meet the standards needed to gain BARCODE designation in the global sequence databases. Because of its web-based delivery and flexible data security model, it is also well positioned to support projects that involve broad research alliances.</p> <p> </p>
Fig. 2 in First Records of a Rare Deep-sea Anglerfish, Himantolophus azurlucens, from the Western North Pacific, with Comments on the DNA Barcodes of the Genus (Lophiiformes: Himantolophidae)
Fig. 2. Neighbor-joining tree based on sequence variations of the partial mitochondrial DNA COI gene and escal appendages of representative specimens. Sequences indicated by catalog numbers of specimens (determined here in bold italic) or INSDIC/BOLD registration numbers (determined in previous studies—see Table 1). Numbers at branches indicate bootstrap probabilities following 1000 bootstrap replications. Scale bar equals 0.01 of uncorrected p-distance. Photos were provided by the CSIRO Australian National Fish Collection (CSIRO specimens) and A. L. Stewart (NMNZ specimens).
Fig. 1. Himantolophus azurlucens, FAKU 148811, 163.7 in First Records of a Rare Deep-sea Anglerfish, Himantolophus azurlucens, from the Western North Pacific, with Comments on the DNA Barcodes of the Genus (Lophiiformes: Himantolophidae)
Fig. 1. Himantolophus azurlucens, FAKU 148811, 163.7 mm SL, female (A, C) and FAKU 149087, 200.7 mm SL, female (B, D). A, B, Fresh specimens; C, D, illicial apparatus.
Fig. 4 in Conspecificity of Phintella aequipeiformis Zabka, 1985 and P. lucai Zabka, 1985 (Araneae: Salticidae) confirmed by DNA barcoding
Fig. 4. Phintella aequipeiformis specimens from Vietnam; males (A-E), females (F-I). (A, D-E) Palp, ventral view. (B) Palp, retrolateral view. (C) Palp, dorsal view. (F, H) Epigyne, ventral view. (G, I) Epigyne, dorsal view. Abbreviations: CD, copulatory duct; CO, copulatory opening; FD, fertilization duct; FO, rounded flaky outgrowth. Scale lines 0.2 mm (A-E), 0.05 mm (F-I). Specimen codes: Sal-LP-0329 (A-C), Sal-LP-0491 (D), Sal-LP-0587 (E), Sal-LP-0048 (F-G), Sal-LP-0588 (H-I).
Fig. 3 in Conspecificity of Phintella aequipeiformis Zabka, 1985 and P. lucai Zabka, 1985 (Araneae: Salticidae) confirmed by DNA barcoding
Fig. 3. Phintella aequipeiformis specimens from Vietnam; males (A-C, G, I), females (D-F, H). (A-B, D-E) Body, dorsal view. (C, F) Body, lateral view. (G-H) Prosoma, frontal view. (I) Chelicera and fang, ventral view. Scale lines 1 mm (B-C, E-F), 0.5 mm (G- H), 0.2 mm (I). Specimen codes: Sal-LP-0586 (A, I), Sal-LP-0329 (B-C), Sal-LP-0490 (D-F), Sal-LP-0622 (G), Sal-LP-0325 (H).
Fig. 2. Neighbor-joining tree generated under the K2P in Conspecificity of Phintella aequipeiformis Zabka, 1985 and P. lucai Zabka, 1985 (Araneae: Salticidae) confirmed by DNA barcoding
Fig. 2. Neighbor-joining tree generated under the K2P distance model, based on a dataset consisting of 851 bp sequences. Numbers beside nodes refer to bootstrap values (1000 replicates). DDBJ/Genbank accession numbers are placed before species names.
Barcoding populations of Pseudomonas fluorescens SBW25
<p>In recent years evolutionary biologists have developed increasing interest in the use of barcoding strategies to study eco-evolutionary dynamics of lineages within evolving populations and communities. Although barcoded populations can deliver unprecedented insight into evolutionary change, barcoding microbes presents specific technical challenges. Here, strategies are described for barcoding populations of the model bacterium Pseudomonas fluorescens SBW25, including the design and cloning of barcoded regions, preparation of libraries for amplicon sequencing, and quantification of resulting barcoded lineages. In so doing, we hope to aid the design and implementation of barcoding methodologies in a broad range of model and non-model organisms. In here we deposit, the raw and processed data we have used during our study.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.