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Fig. 4. Data labels. A in The primary types of some species of Centris bees described by European entomologists in the 18 and 20 centuries (Hymenoptera: Apidae)
Fig. 4. Data labels. A. Centrisrhodophthalma Pérez, 1911 (lectotype ♀). B. Centristransversa Pérez, 1905 (lectotype ♀).
Processed Vectra images for primary central nervous system lymphoma (PCNSL) patients
<ul> <li>FFPE materials</li> </ul> <p>Formalin-fixed paraffin-embedded (FFPE) tumor samples and clinical data were obtained from PCNSL patients enrolled in the HOVON105/ALLG NHL 24 intergroup, multicenter, open-label, randomized phase 3 study (NTR2437 and ACTRN12610000908033) through the HOVON Pathology Facility and Biobank. </p> <ul> <li>Muiltiplex imaging</li> </ul> <p>Multiplex immunofluorescence was performed on 4-µm-thick formalin-fixed, paraffin-embedded whole tissue sections using the Opal 7-color fluorescence immunohistochemistry (IHC) kit (Akoya biosciences, USA), as previously described. In brief, slides were deparaffinized and rehydrated, followed by a blocking step for endogenous peroxidase using 0.3% H<sub>2</sub>O<sub>2</sub>/methanol and fixation with 10% neutral buffered formalin (Leica Biosystems, Germany). Slides were washed in Milli-Q water and 0.05% Tween20 in 1x Tris-Buffered Saline (TBS-T). Antigen retrieval was done by placing the slides in 0.05% ProClin300/Tris–EDTA buffer pH 9.0 in a microwave at 100% power until boiling, followed by 15 min at 30% power. Slides were cooled in Milli-Q water, washed in 1x TBS-T and blocked with Antibody Diluent (Agilent, USA). The slides were then incubated with primary antibody diluted in Normal Antibody Diluent, followed by incubation with the broad spectrum HRP from the SuperPicture Polymer Detection Kit (Life Technologies, USA). Next, the slides were incubated with Opal TSA fluorochromes diluted in an amplification buffer (Akoya biosciences, USA). The primary and secondary antibody complex was stripped by microwave treatment with 0.05% ProClin300/Tris–EDTA buffer at pH 9.0. Finally, DAPI working solution (Akoya biosciences, USA) was applied and the slides were mounted with Prolong Diamond Anti-fade mounting medium (#P36965; Life Technologies).</p> <ul> <li>Image processing</li> </ul> <p>Stained slides were scanned using the Vectra Polaris Automated Quantitative Pathology Imaging System (Akoya biosciences, USA). From each slide, representative tumor regions and regions at the junction of tumor and surrounding cerebral tissue were selected and multispectral imaging (MSI) images were acquired at 40x resolution. After image capture, the images were spectrally unmixed and analyzed, using supervised machine learning algorithms within Inform 4.2.2. (Akoya biosciences). Cells were assigned into ten different phenotype categories: “PAX5+PD-L1-”, “PAX5+PD-L1+”, “CD163+PD-L1-”, “CD163+PD-L1+”, “CD3+CD8-PD-1-”, “CD3+CD8+PD-1-”, “CD3+CD8-PD-1+”, “CD3+CD8+PD-1+”, “other PD-L1+” or “other”, based on the size of the cells and positivity of markers in the panel. </p> <p> </p>
Assessment of Capacity of the primary Health System in the management of noncommunicable Diseases in Ghana
<p>This questionnaire was used to assess the capacity of primary health system in the management of NCDs</p>
Confocal microscopy images (CZI files) of human chondrocytes of different resolutions and magnifications with stained nuclei and primary cilia
<p>This dataset is an addition of https://doi.org/10.5281/zenodo.7994589. Here, we have focused on the influence of the magnifications of microscope objectives and image resolution on the results of automated cilia length measurements.</p> <p>1. Methods</p> <p>1.1 Cell culture</p> <p>Human non-degenerative chondrocytes from a 30-year-old male donor (NHAC-kn, CC-2550; LONZA, Walkersville Inc., Walkersville, MD, USA) were used. These chondrocytes were seeded in passage four with a density of 28000 cells/cm<sup>2</sup> on collagen-coated glass coverslips (GG-15-Collagen; Neuvitro Corporation, Camas, WA, USA). The cells were cultivated in 12-well plates (Thermo Fisher Scientific Inc., Waltham, MA, USA) under hypoxic conditions at 37°C, 5% CO<sub>2</sub> and 5% O<sub>2</sub> with different media compositions for three days.<br> The basal medium consisted of Dulbecco’s Modified Eagle Medium (DMEM) (Gibco™) including high glucose (GlutaMAX™), sodium pyruvate supplements (Thermo Fisher Scientific Inc., Waltham, MA, USA), as well as 1% penicillin/streptomycin (Pen/Strep; Thermo Fisher Scientific Inc.), 1% Amphotericin B (Biochrom GmbH, Berlin, Germany), and 50 µg mL<sup>−1</sup> ascorbic acid (Sigma-Aldrich, Merck KGaA, Darmstadt, Germany). To this basal medium, the following supplements were added: ITS with Dexa + IGF-1 + TGF-β1: 1% Insulin-Transferrin-Selenium (ITS+™), 100 nM dexamethasone, 50 ng mL<sup>−1</sup> insulin-like growth factor (IGF)-1 (R&D Systems, Minneapolis, MN, USA) and 50 ng mL<sup>−1</sup> transforming growth factor (TGF)-β1 (Peprotec, Hamburg, Germany).</p> <p>1.2 Immunocytochemistry</p> <p>After three days of cultivation in the different media compositions, the chondrocytes were washed once with phosphate-buffered saline (PBS; Biochrom GmbH, Berlin, Germany) and fixed for 10 min at room temperature (RT) with 4% paraformaldehyde (ROTI ® Histofix, Carl Roth GmbH + Co. KG, Karlsruhe, Germany). After fixation, cells were washed again and permeabilized with 0.2% Triton-X100 (Merck, Darmstadt, Germany) for 10 min. For blocking the unspecific binding sites, cell-seeded coverslips were incubated with bovine serum albumin (BSA; Sigma-Aldrich) with a concentration of 5% in PBS for one hour at RT after another washing step with PBS. To stain the primary cilium, cells were incubated with anti-acetylated α-tubulin (6-11B-1) (RRID: AB 628409) labeled with Alexa Fluor 647 (sc-23950 AF647, Santa Cruz Biotechnology, Dallas, TX, USA) diluted 1:200 in PBS at 4°C overnight. Additionally, the Actin cytoskeleton was stained with Acti-stain 488 Fluorescent Phalloidin (Cytoskeleton, Inc., Denver, CO, USA) diluted 10 in PBS for 30 min at RT. Afterward, cells were washed three times with PBS, and the coverslips were fixed with Fluoroshield™ (Sigma-Aldrich) containing 4’,6-Diamidino-2-phenylindole (DAPI).</p> <p>1.3 Image acquisition</p> <p>Three-dimensional fluorescence images of stained cells were acquired with a ZEISS ELYRA LSM 780 confocal laser scanning microscope (CLSM) (Carl Zeiss AG, Oberkochen, Germany). To find optimal microscopy parameters for automated detection and length measurement of primary cilia, images were recorded using a Plan-Apochromat 63×/1.40 Oil DIC M27 objective (Carl Zeiss AG, Oberkochen, Germany) or an α Plan-Apochromat 100 × /1.46 Oil DIC M27 Elyra objective (Carl Zeiss AG, Oberkochen, Germany) as well as the following resolutions: 1024 × 1024, 2048 × 2048 and 4096 × 4096 pixels resulting in different voxel sizes (see metadata of files).</p>
Confocal microscopy images (CZI files) of human chondrocytes in different cell culture media with stained nuclei and primary cilia
<p>1. Methods</p> <p>1.1 Cell culture</p> <p>For investigating the influence of the cell culture medium composition on the lengths of primary cilia, human non-degenerative chondrocytes from a 30-year-old male donor (NHAC-kn, CC-2550; LONZA, Walkersville Inc., Walkersville, MD, USA) were used. These chondrocytes were seeded in passage four with a density of 28000 cells/cm<sup>2</sup> on collagen-coated glass coverslips (GG-15-Collagen; Neuvitro Corporation, Camas, WA, USA). The cells were cultivated in 12-well plates (Thermo Fisher Scientific Inc., Waltham, MA, USA) under hypoxic conditions at 37°C, 5% CO<sub>2</sub> and 5% O<sub>2</sub> with different media compositions for three days.<br> The basal medium consisted of Dulbecco’s Modified Eagle Medium (DMEM) (Gibco™) including high glucose (GlutaMAX™), sodium pyruvate supplements (Thermo Fisher Scientific Inc., Waltham, MA, USA), as well as 1% penicillin/streptomycin (Pen/Strep; Thermo Fisher Scientific Inc.), 1% Amphotericin B (Biochrom GmbH, Berlin, Germany), and 50 µg mL<sup>−1</sup> ascorbic acid (Sigma-Aldrich, Merck KGaA, Darmstadt, Germany). To this basal medium, different supplements were added, creating four groups:<br> 1) ITS: 1% Insulin-Transferrin-Selenium (ITS+™ Premix, BD Biosciences, Franklin Lakes, NJ, USA),<br> 2) ITS with Dexa: 1% Insulin-Transferrin-Selenium (ITS+™) and 100 nM dexamethasone (Sigma-Aldrich, Merck KGaA, Darmstadt, Germany),<br> 3) ITS with Dexa + IGF-1 + TGF-β1: 1% Insulin-Transferrin-Selenium (ITS+™), 100 nM dexamethasone, 50 ng mL<sup>−1</sup> insulin-like growth factor (IGF)-1 (R&D Systems, Minneapolis, MN, USA) and 50 ng mL<sup>−1</sup> transforming growth factor (TGF)-β1 (Peprotec, Hamburg, Germany),<br> 4) FBS: 10% fetal bovine serum (FBS, Pan Biotech, Aidenbach, Germany).</p> <p>1.2 Immunocytochemistry</p> <p>After three days of cultivation in the different media compositions, the chondrocytes were washed once with phosphate-buffered saline (PBS; Biochrom GmbH, Berlin, Germany) and fixed for 10 min at room temperature (RT) with 4% paraformaldehyde (ROTI ® Histofix, Carl Roth GmbH + Co. KG, Karlsruhe, Germany). After fixation, cells were washed again and permeabilized with 0.2% Triton-X100 (Merck, Darmstadt, Germany) for 10 min. For blocking the unspecific binding sites, cell-seeded coverslips were incubated with bovine serum albumin (BSA; Sigma-Aldrich) with a concentration of 5% in PBS for one hour at RT after another washing step with PBS. To stain the primary cilium, cells were incubated with anti-acetylated α-tubulin (6-11B-1) (RRID: AB 628409) labeled with Alexa Fluor 647 (sc-23950 AF647, Santa Cruz Biotechnology, Dallas, TX, USA) diluted 1:200 in PBS at 4°C overnight. Additionally, the Actin cytoskeleton was stained with Acti-stain 488 Fluorescent Phalloidin (Cytoskeleton, Inc., Denver, CO, USA) diluted 10 in PBS for 30 min at RT. Afterward, cells were washed three times with PBS, and the coverslips were fixed with Fluoroshield™ (Sigma-Aldrich) containing 4’,6-Diamidino-2-phenylindole (DAPI).</p> <p>1.3 Image acquisition</p> <p>Three-dimensional fluorescence images of stained cells were acquired with a ZEISS ELYRA LSM 780 confocal laser scanning microscope (CLSM) (Carl Zeiss AG, Oberkochen, Germany). Images were recorded using a Plan-Apochromat 63×/1.40 Oil DIC M27 objective (Carl Zeiss AG, Oberkochen, Germany). The distance of two layers was 0.2814 µm and the resolution 1024 × 1024 pixels (scan magnification: 0.6, pixel length: 0.2196 µm).</p>
Figure 2 in Multiple resistance to primary pests of grain sorghum hybrids: Spodoptera frugiperda (Lepidoptera: Noctuidae), Diatraea saccharalis (Lepidoptera: Crambidae), and Diceraeus melacanthus (Hemiptera: Pentatomidae)
Figure 2 Dendrogram of cluster analysis based on the Euclidean distance and grouping by UPGMA regarding scores of damage by Spodoptera frugiperda larvae on grain sorghum hybrids at 7 and 14 days after infestation.
Figure 5 in Multiple resistance to primary pests of grain sorghum hybrids: Spodoptera frugiperda (Lepidoptera: Noctuidae), Diatraea saccharalis (Lepidoptera: Crambidae), and Diceraeus melacanthus (Hemiptera: Pentatomidae)
Figure 5 Scores of injury on sorghum plants caused by S. frugiperda (a); D. saccharalis (b); and D. melacanthus (c).
Figure 1 in Multiple resistance to primary pests of grain sorghum hybrids: Spodoptera frugiperda (Lepidoptera: Noctuidae), Diatraea saccharalis (Lepidoptera: Crambidae), and Diceraeus melacanthus (Hemiptera: Pentatomidae)
Figure 1 Green-belly stink bug injury based on the damage rating scale adapted by Roza-Gomes et al. (2011) (0-4) to maize injury.
Can we collect health-related quality of life information from anticoagulated atrial fibrillation participants who have recently experienced a bleed? An observational feasibility study in primary, and secondary care and through an online forum
<p>The purpose of the study was to evaluate the feasibility of recruiting participants diagnosed with atrial fibrillation (AF) taking oral anticoagulation therapies (OACs) and recently experiencing a bleed to collect health-related quality of life (HRQoL) information.</p> <p><strong>Design</strong></p> <p>Observational feasibility study. The study aimed to determine the feasibility of recruiting participants with minor and major bleeds, the most appropriate route for recruitment and the appropriateness of the Patient Reported Outcome Measures (PROMs) selected for collecting HRQoL information in AF patients, and the preferred format of the surveys.</p> <p><strong>Setting</strong></p> <p>Primary care, secondary care, and via an online patient forum.</p> <p><strong>Participants</strong></p> <p>The study population was adult patients (≥ 18) with Atrial Fibrillation (AF) taking oral anticoagulation therapies (OATs) who had experienced a recent major or minor bleed within the last four weeks.</p> <p><strong>Primary and Secondary outcome measures</strong></p> <p>Primary outcome:</p> <p>Patient reported outcome measures (PROMs): EuroQol 5 dimensions-5 levels (EQ-5D-5L); Perception of anticoagulant treatment questionnaire, part 2 only (PACT-Q, part 2); Atrial fibrillation effect on quality of life (AFEQT)</p> <p>Secondary outcomes:</p> <p>Location of bleed; bleed severity; current treatment; patient perceptions of HRQoLin relation to bleeding events.</p> <p><strong>Results</strong></p> <p>We received initial expressions of interest from 103 participants. We subsequently recruited 32 participants to the study- 14 from primary care and 18 through the AF forum. No participants were recruited through secondary care. Despite 32 participants consenting, only 26 initial surveys were completed. We received follow-up surveys from 11 participants (8 primary care and 3 AF forum). COVID-19 had a major impact on the study. </p> <p><strong>Conclusions</strong></p> <p>Primary care was the most successful route for recruitment. Most participants recruited to the study experienced a minor bleed. Further ways to recruit in secondary care should be explored, especially to capture more serious bleeds. </p> <p><strong>Registration</strong></p> <p>The study was adopted onto the NIHR Portfolio (I.D. #47771) and registered with www.ClinicalTrials.gov (#NCT04921176) in February 2021.</p> <p>Dataset contains all anonymised data for the participants who completed the survey including demographics, details of bleeds, co-morbidities and completed patient reported outcomes</p>
Fig. 7 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 7 – Comparison of the sizes of foraging areas of polycalic colonies and supercolonies of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges: a, Crimea, b, – Rostov-on-Don, c, Tashkent.
Fig. 6 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 6 – Average values of the average size of the foraging areas of Crematogaster subdentata (a) and Lasius neglectus (b) in the primary and secondary ranges. C – Crimea, T – Tashkent, R – Rostov-on-Don.
Fig. 5 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 5 – Relation of tree and shrub species visited by Crematogaster subdentata (a, Crimea, b, Rostov-on-Don, c, Tashkent) and Lasius neglectus (d, – Crimea, e, – Rostov-on-Don, f, – Tashkent). Trees: Ac – Acer sp., Ah – Aesculus hippocastanum, Aj – Albizia julibrissin, Al – Ailanthus altissima, An – Acer negundo, Cl – Cedrus libani, Co – Cydonia oblonga, Cs – Cupressus sempervirens, Ea – Elaeagnus angustifolia, Fe – Fraxinus excelsior, Fr – Fraxinus sp., Gl – Gleditsia triacanta, Jr – Juglans regia, M – Morus sp., Md – Malus domestica, Mn – Morus nigra, Pa – Prunus americana, Pb - Pinus brutia, Pc – Prunus cerasus, Pd – Prunus domestica, Pi – Pinus pallasiana, Pp – Populus niger, Po – Populus alba, Pr – Prunus cerasifera, Ps – Prunus spinosa, Py - Populus pyramidalis, Ra – Robinia pseudoacacia, Sa – Salix sp., Sj – Styphnolobium japonicum, Tl – Tilia sp., Ul – Ulmus sp., Us – Ulmus laevis.
Fig. 1 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 1 – Distribution of Crematogaster subdentata and Lasius neglectus in Tashkent C. subdentata, polycalic colonies, C. subdentata, monocalic colonies, L. neglectus,> 20 nests per 100 m, L. neglectus, 10-20 nests per 100 m, L. neglectus, <10 nests per 100 m.
Fig. 2 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 2 – Scheme of the foraging areas of Lasius neglectus in Rostov-on-Don species; trees: Pc – Prunus cerasus, Ps – Prunus spinosa, Ul – Ulmus sp.
Fig. 4 in Comparative analysis of the population structure of Crematogaster subdentata and Lasius neglectus in the primary and secondary ranges (Hymenoptera: Formicidae)
Fig. 4 – Scheme of the foraging areas of Crematogaster subdentata in Crimea (A) and Tashkent (B) large accessible nests of C. subdentata in buildings and outside; inaccessible nests of C. subdentata in buildings; trees: Co – Cydonia oblonga, Jr – Juglans regia, M – Morus sp., Md – Malus domestica, Mn – Morus nigra, Pa – Prunus americana, Pd – Prunus domestica.
Primary data for: "Remotely sensed localised primary production anomalies predict the burden and community structure of infection in long-term rodent datasets"
<p>Datasets</p>
Disruption of an ant-plant mutualism shapes interactions between lions and their primary prey
<p><strong>Data and file overview:</strong></p> <ol> <li>Kamaru_Path_Analysis_Data.csv</li> <li>Kamaru_Path_Analysis.R</li> <li>Kamaru_Zebra_RSF_Data.csv</li> <li>Kamaru_Zebra_RSF.R</li> </ol> <p><strong>Layers used to build Zebra RSF:</strong></p> <ol> <li>Kamaru_DWater: distance to water</li> <li>Kamaru_DGlade: distance to glade</li> <li>Kamaru_DSettlement: distance to human settlement</li> <li>Kamaru_OPC_Veg: vegetation layer (classes: <em>V. drepanolobium</em>, <em>E. divinorum, </em>others)</li> </ol> <p><strong>SPECIFIC INFORMATION FOR: Kamaru_Path_Analysis_Data.csv</strong></p> <ol> <li>Number of variables: 11</li> <li>Description: This data file includes 105 zebra kill sites and paired random locations from June 2019 to August 2020. It also includes: (A) monthly utilization distributions of lion prides associated with each kill site and paired point; and (B) zebra densities estimated from resource selection functions, associated with each kill site, and paired random location. Please see our supplementary materials for more details on data and methods.</li> <li>Variable list:</li> </ol> <p>(A) rsf.block: Resource Selection Function blocks (block 1: Jan-Apr 2019, block 2: May-Sep 2019, block 3: Oct 2019 – Jan 2020, block 4: Feb-May 2020, block 5: Jun-Sep 2020)</p> <p>(B) Kill_ID: kill identifier.</p> <p>(C) Lion_ID: individual lion pride identifier.</p> <p>(D) Date (Day, Month, Year) when a specific kill occurred.</p> <p>(E) Zebra_kill (1 = kill site, 0 = paired random location).</p> <p>(F). Species: Zebra.</p> <p>(G) Visibility: openness measurement using a rangefinder in (m).</p> <p>(H) Lion_activity: Utilization distributions (UD) of lions.</p> <p>(I) Invasion (1 = invaded by big-headed ants, 0 = uninvaded by big-headed ants).</p> <p>(J) zeb.rsf: resource selection function value.</p> <p>(K) zeb.density: zebra density estimated from resource selection functions.</p> <p><strong>SPECIFIC INFORMATION FOR: Kamaru_Zebra_RSF_Data.csv</strong></p> <ol> <li>Number of variables: 10</li> <li>Description: This data file includes 182 zebra sightings, paired with 10 random points created for each sighting/used point. Also, the data includes actual GPS locations of each sighting and the total number of zebras in each sighting. Please see our supplementary materials for more details on data and methods.</li> <li>Variable list:</li> </ol> <p>(A) Species: Zebra.</p> <p>(B) Date (Day, Month, Year) for that sighting.</p> <p>(C) Survey: count identifier (Survey 2 to 21).</p> <p>(D) GPS location (X and Y), longitude and latitude of that sighting location.</p> <p>(E) Transect: Transect number.</p> <p>(F) Used: (1= zebra sighting, 0 = paired point).</p> <p>(G) zebra.ct: total number of zebras in each sighting.</p> <p> </p> <p><strong>R CODE</strong></p> <p><strong>SPECIFIC INFORMATION FOR: Kamaru_Path_Analysis.R</strong></p> <ol> <li>Description: Apply this code to Kamaru_Path_Analysis_Data.csv to build nested path models.</li> </ol> <p><strong>SPECIFIC INFORMATION FOR: Kamaru_Zebra_RSF.R</strong></p> <ol> <li>Description: Apply this code to Kamaru_Zebra_RSF_Data.csv to build resource selection functions for zebra. Use the following layers: Kamaru_DWater, Kamaru_DGlade, Kamaru_DSettlement and Kamaru_OPC_Veg to build the Zebra RSF.</li> </ol>
Therapeutic drug monitoring of pazopanib in renal cell carci-noma and soft tissue sarcoma – a systematic review_Primary DATA
<p>Primary dataset of the search made for the systematic review: A systematic search of PubMed and Web of Science databases was conducted using search terms related to pazopanib and TDM. Out of 162 and 225 articles identified, respectively, nine articles were selected for review, as they evaluated treatment outcomes or toxicity concerning drug exposure</p>
Data on phenological changes of benthic primary producers from Lake Saint-Pierre (1982-2019), Lake Müggelsee (2000-2021), Limnotron warming experiments and a literature synthesis
<p>This dataset regroup data on phenology of inland water benthic primary producers (macrophytes and periphyton) and includes five major data sources: a literature synthesis, long-term data on phenology from Lake Saint-Pierre (St. Lawrence River, Québec, Canada) and lake Müggelsee (Berlin, Germany), as well as two warming experiments. This data was assembled for a paper in review at Limnology and Oceanography Letters.</p> <p>Additionnal details are provided in the metadata file.</p> <p>Version 2 add some clarifications in the metadata, corrects typos in the pheno_litsearch_InlandLittoral.csv datasheet and added the datasheet pheno_litsearch_raw_responsevar.csv</p>
A biobank of patients with Primary Immune Deficiencies (PID)
<pre>A biobank of patients with Primary Immune Deficiencies (PID).</pre>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.