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21,320 results for “Transcription”
Transcriptional changes in macaques exposed to Sudan virus and treated with a vehicle controls or obeldesivir for 5 or 10 days
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The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
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LsRTDv1: A reference transcript dataset for accurate transcript-specific expression analysis in lettuce
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Data from: Inherent single-cell heterogeneity of the transcriptional response to hypoxia in cancer cells
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Effects of the entomopathogenic fungus Mucor hiemalis BO-1 on the physical functions and transcriptional signatures of Bradysia odoriphaga larvae
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Transient intracellular acidification regulates the core transcriptional heat shock response
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UCI Libraries chatbot Transcripts (ANTswers)
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Single gene analysis in yeast suggests nonequilibrium regulatory dynamics for transcription
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Crystal structure of the coild-coil oligomerisation domain of the transcription factor PHOSPHATE STARVATION RESPONSE 1 (PHR1) from Arabidopsis - native dataset form 3
<p>gzipped tar archive contains the raw diffraction images (Pilatus 2M-F detector, SLS beamline PXIII), the data processing directory (xds_nat1) and the scaled and converted structure factors (xdsconv_nat1).</p>
Crystal structure of the coild-coil oligomerisation domain of the transcription factor PHOSPHATE STARVATION RESPONSE 1 (PHR1) from Arabidopsis - native dataset form 2
<p>the gzipped tar archive contains the raw diffraction images (Swiss Light Source beamline PXIII, Pilatus 2M-F detector), the data processing directory (xds_nat1) and the scaled and converted structure factors (xdsconv_nat1)</p>
Crystal structure of the coild-coil oligomerisation domain of the transcription factor PHOSPHATE STARVATION RESPONSE 1 (PHR1) from Arabidopsis - native dataset form 1
<p>gz tar archive contains the diffraction images (Pilatus 2M-F detector, SLS beamline PXIII), the data processing files (xds_nat1) and the scaled and converted data in mtz format (xdsconv_nat1)</p>
Aggregated frequencies of transcription initiations observed in FANTOM5 CAGE data on GRCm38, including alignments with low mapping qualities
<p><strong>Overview</strong></p> <p>Aligned reads of the FANTOM5 CAGE data have been used after filtering (ones with mapping quality less than 20 or percent identity less than 85% were discarded) for general purpose, resulting in the data set consisting of only the reads aligned with confidence. The filtering process made possible to interpret the data without ambiguity, however it also limited interpretation of paralogous or duplicated regions within the genome. Here all of the 5'-ends of the CAGE read alignments, including the ones with low mapping quality, were counted. The counts in the individual profiles were aggregated and summed up. </p> <p>This data set is produced for mouse, in the same way to the one for human data set http://doi.org/10.5281/zenodo.1410835</p> <p> </p> <p><strong>Data files</strong></p> <p>The resulting data files are formatted as bigWig (https://genome.ucsc.edu/FAQ/FAQformat.html#format6.1). '*.fwd.bw' and '*.rev.bw' represent forward and reverse strand on the genome, respectively. </p> <p> </p> <p><strong>Methods</strong></p> <p>The BAM files under https://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v7/basic/ were subjected to 5'-end counting by bedtools v2.27.1 (https://github.com/arq5x/bedtools2), followed by conversion into bigWig with jksrc v366 (http://hgdownload.cse.ucsc.edu/admin/).</p>
Replication Package: A Study on the Accuracy of OCR Engines for Source Code Transcription from Programming Screencasts
<p>The replication package of the paper "A Study on the Accuracy of OCR Engines for Source Code Transcription from Programming Screencasts" including the dataset, results and tools</p>
Stimuli and Results for "Investigating the Perceptual Validity of Evaluation Metrics for Automatic Piano Music Transcription"
<p>This contains the stimuli and the participants data for the listening tests presented in the paper:</p> <p>Adrien Ycart, Lele Liu, Emmanouil Benetos, Marcus T. Pearce. "Investigating the Perceptual Validity of Evaluation Metrics for Automatic Piano Music Transcription". <em>Transactions of the International Society for Music Information Retrieval</em>, 3(1):68-81, 2020 .</p> <p>More precisely, it contains:</p> <ul> <li>MAPS_midi_cut.zip: The MIDI files used to create the stimuli </li> <li>cut_points_seconds.zip: The points in seconds at which the MAPS music pieces were cut to make the stimuli. These correspond to manually-selected 5 to 10 seconds chunks, roughly corresponding to musical phrases.</li> <li>listening_test_results.zip: The data gathered during the listening test: <ul> <li>user_data.csv contains data about participants</li> <li>answers_data.csv contains the answers given by all participants</li> <li>comments.txt contains the comments left by the participants.</li> </ul> </li> </ul> <p>For any enquiries, please contact Adrien Ycart (a.ycart@qmul.ac.uk) or Emmanouil Benetos (emmanouil.benetos@qmul.ac.uk).</p> <p> </p>
K.555 Stele of Aṅkor Bórĕi : Transcription, translation and analysis
<p><a href="https://siddham.network/inscription/k555/">K.555</a> Stele of Aṅkor Bórĕi : Transcription, translation and analysis</p> <p><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions+--+Cambodia">Inscriptions -- Cambodia</a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions.">Inscriptions. </a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Cambodia.">Cambodia. </a></p>
Metadata for Research Data: A Needs Assessment in The Sciences Interview Transcript Dataset
<ul> <li>Transcripts of eight semi-structured interviews with researchers from life and natural sciences about their wishes and requirements for metadata for research data</li> <li>Interview guide (Interviewleitfaden) that was used to conduct all 8 Interviews</li> <li>Needs assessment in order to develop new needs-based Research Data Management services</li> <li>This dataset forms the basis of a Master's Thesis "Metadaten für Forschungsdaten: Bedürfnisse und Anforderungen in den Naturwissenschaften" (= Metadata for Research Data: A Needs Assessment in The Sciences) in Library and Information Science at the Humboldt University of Berlin (2019)</li> <li>The study was conducted as part of the work package "Metadata" of the Austrian project <a href="https://www.e-infrastructures.at/en/work-packages/metadata/">e-Infrastructures Austria Plus</a> (2017-2019)</li> <li>Transcripts of the Interviews C, E, F are in English; Transcript of the interviews A, B, D, G, H are in German</li> <li>Abstract (DE): Bei der Entwicklung von bedarfsgerechten Services im Bereich eScience sind Untersuchungen der Bedürfnisse und Anforderungen der Zielgruppen von besonderer Relevanz. Angelehnt an die Grounded Theory wurden im Rahmen des österreichweiten Projektes e-Infrastructures Austria Plus von April bis Mai 2019 acht Leitfadeninterviews mit Naturwissenschaftlern von der Universität Wien und der Medizinischen Universität Wien durchgeführt. Die Ergebnisse zeigen, dass ein Verständnis des Begriffes „Metadaten“ unter Forschenden noch nicht flächendeckend vorhanden ist. Es konnten aber mehrere Beispiele der Beschreibung von Daten in der Praxis identifiziert, sowie sechs Bereiche an Wünschen der Forschenden herausgearbeitet werden. Diese beschäftigen sich u. a. mit der Notwendigkeit, Services auf Deutsch und Englisch zu konzipieren, mit den Anforderungen an technische Infrastruktur oder dem Wunsch nach dem Einsatz von Data Stewards, die Fachkenntnisse aus einer relevanten Disziplin mitbringen.</li> <li>Abstract (EN): When developing needs-based services for eScience, studies of the needs and requirements of the target groups are of particular relevance. Based on the Grounded Theory, eight guided interviews with scientists from the University of Vienna and the Medical University of Vienna were conducted from April to May 2019 within the framework of the Austria-wide project e-Infrastructures Austria Plus. The results show that an understanding of the term "metadata" among researchers is not yet widely available. However, the study identifies several examples of describing data as well as six areas of researchers' needs in this area. These cover, among other things, the need to design services in German and English, the requirements for technical infrastructure or the desire to use data stewards who bring expertise from a relevant discipline.</li> </ul>
K.6 Piédroit of Pràsàt Prằṃ Lovêṅ : Transcription, translation and analysis
<p><a href="https://siddham.network/inscription/k6/">K.6</a> Piédroit of Pràsàt Prằṃ Lovêṅ : Transcription, translation and analysis</p> <p><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions+--+Cambodia">Inscriptions -- Cambodia</a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions.">Inscriptions. </a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Cambodia.">Cambodia. </a></p>
K.107 Fragment of Práḥ Thãt Khnai Van : Transcription, translation and analysis
<p><a href="https://siddham.network/inscription/k107/">K.107</a> Fragment of Práḥ Thãt Khnai Van : Transcription, translation and analysis</p> <p><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions+--+Cambodia">Inscriptions -- Cambodia</a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Inscriptions.">Inscriptions. </a><br> <a href="https://catalog.lib.uchicago.edu/vufind/alphabrowse/home?source=topic&from=Cambodia.">Cambodia. </a></p> <p> </p>
Mona Arabic and French transcripts of description and comments on her recording in Bashtil, Cairo (Egypt), 26-10-2011
<p>« Mics in the Ears » binaural experiment in Cairo (Egypt): Vincent Battesti & Nicolas Puig, social anthropologists, asked inhabitants of Cairo megapolis in Egypt to record the surrounding urban sounds during one of their daily journeys (without the researcher), equipped with binaural microphones and GPS device. Participants have recorded in different Cairo neighbourhoods, and are themselves from different generations, social and economic backgrounds, and different genders.</p> <p>These text files (pdf and Word) are the transcripts (original in Arabic and translation in French) of the audio file of the description and comments one of them gave us a posteriori when listening to his/her own route he/she recorded with binaural mics. See https://vbat.org/article831 </p>
Leyla Arabic and French transcripts of description and comments on her recording in Darb al-Ahmar, Cairo (Egypt), 27-10-2011
<p>« Mics in the Ears » binaural experiment in Cairo (Egypt): Vincent Battesti & Nicolas Puig, social anthropologists, asked inhabitants of Cairo megapolis in Egypt to record the surrounding urban sounds during one of their daily journeys (without the researcher), equipped with binaural microphones and GPS device. Participants have recorded in different Cairo neighbourhoods, and are themselves from different generations, social and economic backgrounds, and different genders.</p> <p>These text files (pdf and Word) are the transcripts (original in Arabic and translation in French) of the audio file of the description and comments one of them gave us a posteriori when listening to his/her own route he/she recorded with binaural mics. See https://vbat.org/article831</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.