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480
datasets available to search
ShareScore release 0.9.0
Dataset results
480 results for “spatial structure”
STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia [ChIP-Seq]
GEO Series GSE268031. Homo sapiens. 299 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users
GEO Series GSE299708. Homo sapiens. 8 samples. Type: Other.
Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium]
GEO Series GSE302502. Homo sapiens. 12 samples. Type: Other.
STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia [bulk RNA-Seq]
GEO Series GSE267679. Homo sapiens. 111 samples. Type: Expression profiling by high throughput sequencing.
Spatially-structured inflammatory response in the presence of a uniform stimulus: RNAseq screen
GEO Series GSE285534. Danio rerio. 2 samples. Type: Expression profiling by high throughput sequencing.
Macrophages expressing Macrophage Receptor with Collagen Structure Attenuate Liver Fibrosis Through a Tissue Restoration Phenotype [macrophage_liverFibrosis_GeoMx_spatial-seq]
GEO Series GSE291711. Mus musculus. 159 samples. Type: Other.
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes of local and large-scale chromatin spatial structure
GEO Series GSE76573. Gallus gallus. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [bulk RNA seq]
GEO Series GSE271059. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing.
Subtype-Specific and Structure Variation-Induced Chromatin Spatial Reorganization in Acute Myeloid Leukemia [ATAC-Seq]
GEO Series GSE152134. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
GEO Series GSE165141. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia [Hi-C]
GEO Series GSE267780. Homo sapiens. 40 samples. Type: Other.
Variable chromatin secondary structures in live cells revealed by radiation-induced spatially correlated DNA cleavage mapping [RICC-Seq]
GEO Series GSE81806. Homo sapiens. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [GEOMX]
GEO Series GSE271255. Homo sapiens. 81 samples. Type: Other.
Spatial genetic structure to identify populations at risk
<p>Microsatellite genotypes, locality information, and raster data for Miller et al</p>
Strength and spatial structure of the perturbation induced by a tropical cyclone to the underlying eddies
<p>The model data for the geostrophic response to a tropic cyclone.</p> <p>dd------model time (day)<br> depth---model depth (m)<br> y-------cross-track distance (km)<br> U-------along-track currents (m/s)<br> V-------cross-track currents (m/s)<br> TEM-----temperature (C)<br> SALN----salnity (psu)<br> SSH-----sea surface height (cm);</p> <p>The subscript "tot" denote the total response while the subscript "geo" the geostrophic response.</p>
Supplementary material - 'Neural basis of spatial delusions: analysis of topographic and structural disconnection patterns'
<p>Supplementary material - 'Neural basis of spatial delusions: analysis of topographic and structural disconnection patterns'</p>
Bayesian regional flood frequency analysis with GEV hierarchical models under spatial dependency structures (code and dataset)
<p>The provided material contains the dataset and the models' code used in the article named “Bayesian regional flood frequency analysis with GEV hierarchical models under spatial dependency structures”.</p>
Spatial distribution of Forest Structure and Carbon Stock in Japan
<p>This repository contains the results for the paper entitled:High-Resolution Mapping of Forest Structure and Carbon Stock using Multi-source Remote Sensing Data in Japan.</p> <p><a href="https://doi.org/10.1016/j.rse.2024.114322">https://doi.org/10.1016/j.rse.2024.114322</a></p> <p>The dataset includes forest height, volume, AGB and carbon density across Japan with a spatial resolution at 10 m.</p> <div> <p>The data is retained in integer format (8 or 16-bit unsigned). For higher precision data, please contact the corresponding author.</p> <p>-------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>Projection: EPSG:3857 WGS 84 / Pseudo-Mercator</p> <p>Spatial resolution: 10 m</p> <p>Forest mask: JAXA HRLULC 21.03</p> <p>Traning data: Airborne LiDAR derived forest structures squared plots.</p> <p>Predictors variables: PALSAR-2,Sentinel-2,SRTM</p> <p>-------------------------------------------------------------------------------------------------------------------------------------------------------</p> </div>
Data from: Spatial and temporal genetic structure of a river-resident Atlantic salmon (Salmo salar) after millennia of isolation
The river-resident Salmo salar ("småblank") has been isolated from other Atlantic salmon populations for 9,500 years in upper River Namsen, Norway. This is the only European Atlantic salmon population accomplishing its entire life cycle in a river. Hydropower development during the last six decades has introduced movement barriers and changed more than 50% of the river habitat to lentic conditions. Based on microsatellites and SNPs, genetic variation within småblank was only about 50% of that in the anadromous Atlantic salmon within the same river. The genetic differentiation (FST) between småblank and the anadromous population was 0.24. This is similar to the differentiation between anadromous Atlantic salmon in Europe and North America. Microsatellite analyses identified three genetic subpopulations within småblank, each with an effective population size Ne of a few hundred individuals. There was no evidence of reduced heterozygosity and allelic richness in contemporary samples (2005–2008) compared with historical samples (1955–56 and 1978–79). However, there was a reduction in genetic differentiation between sampling localities over time. SNP data supported the differentiation of småblank into subpopulations and revealed downstream asymmetric gene flow between subpopulations. In spite of this, genetic variation was not higher in the lower than in the upper areas. The meta-population structure of småblank probably maintains genetic variation better than one panmictic population would do, as long as gene flow among subpopulations is maintained. Småblank is a unique endemic island population of Atlantic salmon. It is in a precarious situation due to a variety of anthropogenic impacts on its restricted habitat area. Thus, maintaining population size and avoiding further habitat fragmentation are important.
Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells
GEO Series GSE248082. Homo sapiens. 17 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.