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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling
GEO Series GSE120752. Drosophila melanogaster; Drosophila virilis; Drosophila busckii. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Genome-wide transcriptional, epigenetic, and topological changes occurring in human natural killer cells in response to HDAC inhibitor
GEO Series GSE227664. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [RNA-seq]
GEO Series GSE218114. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Epigenome editing strategies for the functional annotation of topological insulators
GEO Series GSE121998. Homo sapiens. 74 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Escape from X chromosome inactivation occurs within topologically associated domains
GEO Series GSE49111. Mus musculus. 2 samples. Type: Other.
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
GEO Series GSE181694. Mus musculus. 25 samples. Type: Other.
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [ATAC-seq]
GEO Series GSE218111. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of the DNA topology in T47D-MTVL cells by Hi-C data
GEO Series GSE147627. Homo sapiens. 1 samples. Type: Other.
Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (RNA-seq)
GEO Series GSE146668. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Interplay between genome topology and gene regulation during somatic cell reprogramming
GEO Series GSE96611. Mus musculus. 57 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements
GEO Series GSE198763. Drosophila melanogaster. 44 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes (ChIP-Seq)
GEO Series GSE221518. Mus musculus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A PRE loop at the dac locus acts as a topological chromatin structure that restricts and specifies enhancer promoter communication
GEO Series GSE247377. Drosophila melanogaster. 62 samples. Type: Other.
Chromosome topology shapes neuronal non-CG DNA methylation to influence MeCP2-mediated enhancer repression (ChIP-Seq)
GEO Series GSE123371. Mus musculus. 62 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of IL-1α–responsive enhancers and of IL-1α -mediated changes in chromatin topology.
GEO Series GSE134436. Homo sapiens. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array.
E2A Specifies Adaptive Immunity by Instructing Large-Scale Topological Changes
GEO Series GSE141223. Mus musculus. 62 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements [RNA-seq]
GEO Series GSE198761. Drosophila melanogaster. 6 samples. Type: Expression profiling by high throughput sequencing.
Liebenberg syndrome severity arises from variations in Pitx1 locus topology and ectopically transcribing cells
GEO Series GSE256338. Mus musculus. 15 samples. Type: Other.
Epigenetic maintenance of topological domains in the rearranged gibbon genome
GEO Series GSE115065. Macaca mulatta; Nomascus leucogenys. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.
GEO Series GSE169121. Mus musculus; Homo sapiens. 61 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.