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Data from: Dissecting the contributions of plasticity and local adaptation to the phenology of a butterfly and its host plants
Phenology affects the abiotic and biotic conditions that an organism encounters and consequently its fitness. For populations of high latitude species, spring phenology often occurs earlier in warmer years and regions. Here we apply a novel approach to decompose spatiotemporal covariation between spring temperature and the phenology of two flowering plants, Cardamine pratensis and Alliara petiolata, and a Lepidopteran herbivore, Anthocharis cardamines, across the UK, into the contributions of plasticity and local adaptation. All three species overlap in the time-window over which mean temperatures best predict variation in phenology and we find little evidence that the position of time-windows varies latitudinally, as expected if they were initiated by day-length. The focal species show pronounced temperature-mediated phenological plasticity of similar magnitude. While we find no evidence for local adaptation in the flowering times of the plants, geographic variation in the phenology of the butterfly reveals countergradient local adaptation. Geographic variation in the butterfly's phenology appears to be more sensitive to variation in temperature than the flowering times of the host plants and we find no evidence that coevolution has generated geographic variation in adaptive phenological plasticity.
Data from: Thick eggshells of brood parasitic cowbirds protect their eggs and damage host eggs during laying
Brood parasites lay thick-shelled eggs and numerous hypotheses have been proposed to explain the significance of this trait. We examined whether thick eggshells protect the parasite egg during laying events. We used eggs of the parasitic shiny cowbird (Molothrus bonariensis) and its hosts, the house wren (Troglodytes aedon) and chalk-browed mockingbird (Mimus saturninus) in South America and the eggs of the parasitic brown-headed cowbird (M. ater) and its hosts the house wren and red-winged blackbird (Agelaius phoeniceus) in North America. We experimentally dropped parasite eggs onto host eggs to simulate laying by the parasite, parasite eggs onto parasite eggs to simulate multiple parasitism, host eggs onto parasite eggs to simulate hosts laying from the height cowbirds lay, and stirred eggs to simulate jostling that may occur when cowbirds and hosts interact during laying events. We found that cowbird eggs were significantly less likely to be damaged than host eggs when they were laid onto a host egg and when host and cowbird eggs were laid onto them. There was minimal damage to eggs during jostling experiments, thereby failing to support the hypothesis that thick eggshells provide protection when eggs are jostled. These findings support the hypotheses that thick eggshells resist damage when laid from an elevated position, when additional cowbird eggs are laid onto them in multiply parasitized nests, and these eggs also damage host eggs when laid.
Data from: Characteristics determining host suitability for a generalist parasite
Host quality is critical for parasites. The common cuckoo Cuculus canorus is a generalist avian brood parasite, but individual females show strong preference for a specific host species. Here, we use three extensive datasets to investigate different host characteristics determining cuckoo host selection at the species level: (i) 1871 population-specific parasitism rates collected across Europe; (ii) 14 K cases of parasitism in the United Kingdom; and (iii) 16 K cases of parasitism in Germany, with data collected during the period 1735–2013. We find highly consistent effects of the different host species traits across our three datasets: the cuckoo prefers passerine host species of intermediate size that breed in grass- or shrubland and that feed their nestlings with insects, and avoids species that nest in cavities. Based on these results, we construct a novel host suitability index for all passerine species breeding in Europe, and show that host species known to have a corresponding cuckoo host race (gens) rank among the most suitable hosts in Europe. The distribution of our suitability index shows that host species cannot be classified as suitable or not but rather range within a continuum of suitability.
Data from: Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites
Understanding the genetic architecture of host resistance is key for understanding the evolution of host–parasite interactions. Evolutionary models often assume simple genetics based on few loci and strong epistasis. It is unknown, however, whether these assumptions apply to natural populations. Using a quantitative trait loci (QTL) approach, we explore the genetic architecture of resistance in the crustacean Daphnia magna to two of its natural parasites: the horizontally transmitted bacterium Pasteuria ramosa and the horizontally and vertically transmitted microsporidium Hamiltosporidium tvaerminnensis. These two systems have become models for studies on the evolution of host–parasite interactions. In the QTL panel used here, Daphnia's resistance to P. ramosa is controlled by a single major QTL (which explains 50% of the observed variation). Resistance to H. tvaerminnensis horizontal infections shows a signature of a quantitative trait based in multiple loci with weak epistatic interactions (together explaining 38% variation). Resistance to H. tvaerminnensis vertical infections, however, shows only one QTL (explaining 13.5% variance) that colocalizes with one of the QTLs for horizontal infections. QTLs for resistance to Pasteuria and Hamiltosporidium do not colocalize. We conclude that the genetics of resistance in D. magna are drastically different for these two parasites. Furthermore, we infer that based on these and earlier results, the mechanisms of coevolution differ strongly for the two host–parasite systems. Only the Pasteuria–Daphnia system is expected to follow the negative frequency-dependent selection (Red Queen) model. How coevolution works in the Hamiltosporidium–Daphnia system remains unclear.
Data from: Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals
As climate change challenges organismal fitness by creating a phenotype–environment mismatch, phenotypic plasticity generated by epigenetic mechanisms (e.g., DNA methylation) can provide a temporal buffer for genetic adaptation. Epigenetic mechanisms may be crucial for sessile benthic marine organisms, such as reef-building corals, where ocean acidification (OA) and warming reflect in strong negative responses. We tested the potential for scleractinian corals to exhibit phenotypic plasticity associated with a change in DNA methylation in response to OA. Clonal coral fragments of the environmentally sensitive Pocillopora damicornis and more environmentally robust Montipora capitata were exposed to fluctuating ambient pH (7.9–7.65) and low pH (7.6–7.35) conditions in common garden tanks for ~6 weeks. M. capitata responded weakly, or acclimated more quickly, to OA, with no difference in calcification, minimal separation of metabolomic profiles, and no change in DNA methylation between treatments. Conversely, P. damicornis exhibited diminished calcification at low pH, stronger separation in metabolomic profiles, and responsiveness of DNA methylation to treatment. Our data suggest corals differ in their temporal dynamics and sensitivity for environmentally triggered real-time epigenetic reprogramming. The generation of potentially heritable plasticity via environmental induction of DNA methylation provides an avenue for assisted evolution applications in corals under rapid climate change.
Data from: Transcriptomics of host-specific interactions in natural populations of the parasitic plant purple witchweed (Striga hermonthica)
Host-specific interactions can maintain genetic and phenotypic diversity in parasites that attack multiple host species. Host diversity, in turn, may promote parasite diversity by selection for genetic divergence or plastic responses to host type. The parasitic weed purple witchweed [Striga hermonthica (Delile) Benth.] causes devastating crop losses in sub-Saharan Africa and is capable of infesting a wide range of grass hosts. Despite some evidence for host adaptation and host-by-Striga genotype interactions, little is known about intraspecific Striga genomic diversity. Here we present a study of transcriptomic diversity in populations of S. hermonthica growing on different hosts (maize [Zea mays L.] vs. grain sorghum [Sorghum bicolor (L.) Moench]). We examined gene expression variation and differences in allelic frequency in expressed genes of aboveground tissues from populations in western Nigeria parasitizing each host. Despite low levels of host-based genome-wide differentiation, we identified a set of parasite transcripts specifically associated with each host. Parasite genes in several different functional categories implicated as important in host–parasite interactions differed in expression level and allele on different hosts, including genes involved in nutrient transport, defense and pathogenesis, and plant hormone response. Overall, we provide a set of candidate transcripts that demonstrate host-specific interactions in vegetative tissues of the emerged parasite S. hermonthica. Our study shows how signals of host-specific processes can be detected aboveground, expanding the focus of host–parasite interactions beyond the haustorial connection.
Figure 7 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 7. Parabopyrella mortenseni (Nierstraz and Brender à Brandis, 1929). a) first oostegite of juvenile female (CNCR 34975) parasitising Alpheus normanni, internal view; b) juvenile female (CNCR 35023) parasitising A. cristulifrons, dorsal view; c) antenna and antennule of female CNCR 35023; d) maxilliped of female CNCR 35023. Scale bar = 0.5 mm in a; 1.0 mm in b; 0.2 mm in c-d.
Figure 5 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 5. Capitetragonia alphei (Richardson, 1900), CNCR 34973. a) antenna and antennule of female; b) maxilliped; c) female pleon, ventral view; d) fifth pereopod of male. Scale bar = 0.5 mm in a; 1.0 mm in b-c; 0.1 mm in d.
Figure 4 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 4. Bopyrione synalphei Bourdon and Markham, 1980. a) first oostegite of female parasitising Synalpheus elizabethae (YUC-CC-255-11-006556E), external view; b) first oostegite of female parasitising S. brooksi (YUC-CC-255-11-006555A), external view, c) same, internal view; d) Pleon of female parasitising S. elizabethae (YUC-CC-255-11-006556A), dorsal view. Scale bar = 0.5 mm.
Figure 17 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 17. Brueelia tenebrosa sp. nov. ex Passerella iliaca (Merrem 1786). (a) male habitus, dorsal and ventral views; (b) female habitus, dorsal and ventral views.
Figure 2 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 2. Bopyrid males parasitising Alpheus and Synalpheus shrimps at the SW Gulf of Mexico and Mexican Caribbean. a) Bopyrella harmopleon Bowman, 1956, YUC-CC-255-11-006553; b) Bopyrione synalphei Bourdon and Markham, 1980, YUC-CC-255-11-006556; c) Capitetragonia alphei (Richardson, 1900), CNCR 34973; d) Parabopyrella mortenseni (Nierstraz and Brender à Brandis, 1929), CNCR 34975; e) Eophrixus subcaudalis (Hay, 1917), CNCR 5254. Scale bar = 0.5 mm in a-b; 1.0 mm in c-e.
Figure 16 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 16. Brueelia melospizae sp. nov. ex Melospiza melodia fallax (Baird 1854). (a) male head, dorsal and ventral views; (b) male genitalia, dorsal view (C) male mesosome, ventral view; (d) male paramere, dorsal view; (e) female subgenital plate and vulval margin, ventral view.
Figure 15 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 15. Brueelia melospizae sp. nov. ex Melospiza melodia fallax (Baird 1854). (a) male habitus, dorsal and ventral views; (b) female habitus, dorsal and ventral views.
Figure 1 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 1. Bopyrid females parasitising Alpheus and Synalpheus shrimps at the SW Gulf of Mexico and Mexican Caribbean. a) Bopyrella harmopleon Bowman, 1956, YUC-CC-255-11-006553; b) Bopyrione synalphei Bourdon and Markham, 1980, YUC-CC-255-11-006555; c) Capitetragonia alphei (Richardson, 1900), CNCR 34973; d) Parabopyrella lata (Nierstraz and Brender à Brandis, 1929), CNCR 34974; e) Parabopyrella mortenseni (Nierstraz and Brender à Brandis, 1929), CNCR 34975; f) Eophrixus subcaudalis (Hay, 1917), CNCR 5254. Scale bar = 1.0 mm.
Figure 14 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 14. Brueelia cassiopeia sp. nov. ex Spizella passerina arizonae Coues 1872. (a) male head, dorsal and ventral views; (b) male genitalia, dorsal view (c) male mesosome, ventral view; (d) male paramere, dorsal view; (e) female subgenital plate and vulval margin, ventral view.
Figure 13 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 13. Brueelia cassiopeia sp. nov. ex Spizella passerina arizonae Coues 1872. (a) male habitus, dorsal and ventral views; (b) female habitus, dorsal and ventral views.
Figure 8 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 8. Eophrixus subcaudalis (Hay, 1917), CNCR 5254. a) maxilliped; b) first oostegite, external view; c) first oostegite, internal view; d) lateral plates of the fourth pereomere, dorsal view. Scale bar = 0.5 mm.
Figure 6 in New hosts and distribution records for bopyrid isopods parasitising alpheid shrimps (Decapoda, Alpheidae) in the SW Gulf of Mexico and Mexican Caribbean
Figure 6. Parabopyrella lata (Nierstraz and Brender à Brandis, 1929), CNCR 34974. a) barbula; b) first oostegite, external view; c) first oostegite, internal view. Scale bar = 0.5 mm.
Figure 18 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 18. Brueelia tenebrosa sp. nov. ex Passerella iliaca (Merrem 1786). (a) male head, dorsal and ventral views; (b) male genitalia, dorsal view (c) male mesosome, ventral view; (d) male paramere, dorsal view; (e) female subgenital plate and vulval margin, ventral view.
Figure 12 in Descriptions of seven new species of Brueelia Kéler 1936 (Phthiraptera: Ischnocera: Philopteridae) from North American sparrows (Aves: Passeriformes: Passerellidae), and review of host use by Brueelia vulgata
Figure 12. Brueelia chlorurae sp. nov. ex Pipilo chlorurus (Audubon 1839). (a) male head, dorsal and ventral views; (b) male genitalia, dorsal view (c) male mesosome, ventral view; (d) male paramere, dorsal view; (e) female subgenital plate and vulval margin, ventral view.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.