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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping
GEO Series GSE121257. Homo sapiens. 6 samples. Type: Other.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [Mnase-seq]
GEO Series GSE234251. Mus musculus. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion
GEO Series GSE285087. Homo sapiens; Mus musculus. 10 samples. Type: Other.
Oncogenic c-Myc induces replication stress by increasing chromatin occupancy of cohesins at CTCF sites
GEO Series GSE249375. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Myeloid leukemia dependency MYNRL15 exemplifies class of CTCF-bound lncRNA loci [CUT&RUN]
GEO Series GSE172236. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF (ChIP-Seq)
GEO Series GSE250226. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF
GEO Series GSE250229. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Micro-Capture-C]
GEO Series GSE263638. Homo sapiens. 60 samples. Type: Other.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [I]
GEO Series GSE135394. Mus musculus; Homo sapiens. 113 samples. Type: Expression profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [in situ Hi-C]
GEO Series GSE243837. Mus musculus. 4 samples. Type: Other.
Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF.
GEO Series GSE180307. Mus musculus. 68 samples. Type: Other; Expression profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [HiChIP]
GEO Series GSE243714. Mus musculus. 4 samples. Type: Other.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [Hi-C]
GEO Series GSE156097. Danio rerio. 8 samples. Type: Other.
Chromatin structure and CTCF across the MCF10 breast cancer progression series (ChIP-Seq)
GEO Series GSE98551. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spec-seq sequencing data for CTCF [2018 series]
GEO Series GSE110155. synthetic construct. 4 samples. Type: Other.
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin-STAG1 from WAPL
GEO Series GSE138405. Homo sapiens. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Low affinity CTCF binding drives transcriptional regulation whereas high affinity binding encompasses architectural functions.
GEO Series GSE207640. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding (ChIP-Seq)
GEO Series GSE135646. Mus musculus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
GEO Series GSE30263. Homo sapiens. 174 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of Trim33, Ctcf and H3K27ac binding in embryoid bodies
GEO Series GSE119874. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.