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Fig. 1 in Mat-forming coccoid cyanobacteria from early Silurian marine deposits of Sudetes, Poland
Fig. 1. Geological map of the northern part of the Bardzkie Mountains (Sudetes, southwestern Poland) and stratigraphic section of the Early Palaeozoic deposits at the Żdanów road−cut (after Porębska 1982, and Wyżga 1987; modified).
Fig. 8 in Mat-forming coccoid cyanobacteria from early Silurian marine deposits of Sudetes, Poland
Fig. 8. Diagram showing effect of compaction of a coccoid cyanobacterial aggregate. A–C. 3D aggregate without compaction (A) and under different degree of compaction. D–G. Axial vertical section of the same aggregate without compaction (D) and under different degree of compaction; note that in G outlines of cells and/or capsules are no more identifiable. Not to scale.
Fig. 5 in Mat-forming coccoid cyanobacteria from early Silurian marine deposits of Sudetes, Poland
Fig. 5. Scanning electron microscope (SEM) image of early Silurian subspherical aggregate of benthic coccoid cyanobacteria from Żdanów in horizontal thin section (sample IV–VI 49), showing HF−etched pattern with extending parts representing silicified common mucilage sheats (glycocalyx) and pits representing decomposed cells.
Simulated data from "Gravitational instability in a planet-forming disk"
<h2>Repository Contents</h2> <blockquote> <p><strong>Simulated data from:</strong> Speedie et al. (2024)<br>"Gravitational instability in a planet-forming disk", J. Speedie, R. Dong, C. Hall, C. Longarini, B. Veronesi, T. Paneque-Carreño, G. Lodato, Y. Tang, R. Teague, & J. Hashimoto, <a href="https://www.nature.com/articles/s41586-024-07877-0"><em>Nature</em></a>, (2024).</p> <p><strong>Paper DOI:</strong> <a href="https://doi.org/10.1038/s41586-024-07877-0">https://doi.org/10.1038/s41586-024-07877-0</a></p> </blockquote> <p>This repository contains synthetic ALMA 13CO (J=2-1) image cubes and moment maps generated from 3D smoothed-particle hydrodynamic (SPH) simulations of a gravitationally unstable disk and a Keplerian counterpart. The following products are available:</p> <ul> <li>PHANTOM products</li> <li>MCFOST products</li> <li>Synthetic ALMA image cubes & moment maps</li> </ul> <p>The README provides a more detailed description. In the article, these synthetic data were compared with observed ALMA 13CO (J=2-1) data of the AB Aurigae disk from program 2021.1.00690.S (PI: R. Dong). Those ALMA data can be found here: <a href="https://doi.org/10.11570/24.0087">https://doi.org/10.11570/24.0087</a></p>
Fig. 10 in The local forms of Zootecus (Gastropoda: Pulmonata: Subulinidae) of Pakistan: an archaeomalacological case study
Fig. 10 - Zootecus sp.: Examples of different shell shapes. A) Siranda WP 16. B) Siranda WP 31. C) old collection from Uthal with some juvenile individuals. D) Rohri Hills site 59. E) Rohri Hills site 480 (photo A. Girod).
Colony forming unit (CFU) data accompanying publication: Bacterial microbiome dynamics in commercial integrated aquaculture systems growing Ulva in abalone effluent water.
<p>Excel sheet with colony forming unit (CFU) data from an abalone farm growing the green seaweed <em>Ulva </em>in abalone effluent water. This dataset characterises the bacterial communities isolated from abalone effluent water entering and leaving the <em>Ulva </em>raceways, as well as from <em>Ulva </em>itself. Dataset is accompanied by two SigmaPlot files showing statistical analyses (statistical outcomes also available in publication).</p>
Tab. 1 in The local forms of Zootecus (Gastropoda: Pulmonata: Subulinidae) of Pakistan: an archaeomalacological case study
<p>Tab. 1 - Historical names, dimensions and whorl numbers of the Z <i>ootecus</i> described from Afghanistan and Pakistan. AMNH, American Museum of Natural History; NHMUK, National History Museum, London; PZS, Proceedings of the Zoological Society of London.</p><table><tbody><tr><th><b>Local taxa</b></th><th><b>Collecting areas</b></th><th><b>H mm</b></th><th><b>D mm</b></th><th><b>H/D</b></th><th><b>Whorls</b></th></tr></tbody><tbody><tr><th>1) <i>Zootecus pullus</i> Gray, 1834 - P.Z.S., 2: 66</th><td>Balochistan, Quetta; Kutch; Bank of Ganges; Delhi; Uttar Pradesh</td><td>10</td><td>4</td><td>2.5</td><td>9-10</td></tr><tr><th>2) <i>Zootecus chion</i> (smaller form) <i>gracilior minor</i> (Pfeiffer, 1856)</th><td>Not specified</td><td>11</td><td>4</td><td>2.75</td><td></td></tr><tr><th>3) <i>Zootecus insularis chion</i> (Solem, 1979, tab. IV: 30)</th><td>Afghanistan</td><td>11.8±0.15 (9.8-14.3)</td><td>5.66±0.071 (4.3-6.4)</td><td>2.279 2.234</td><td>7 3/4 + (7 1/8-9)</td></tr><tr><th>4) <i>Zootecus polygyratus</i> Reeve, 1849</th><td>Sindh (Rohri Hills); Baluchistan (Gwadar)</td><td>12</td><td>4</td><td>3</td><td>9</td></tr><tr><th>5) <i>Zootecus chion</i>, Pfeiffer, 1856</th><td>Afghanistan; Punjab; Sindh</td><td>12</td><td>0.5</td><td>2.4</td><td>7-8</td></tr><tr><th>6) <i>Zootecus chion</i> (#2), Pfeiffer, 1856</th><td>Samples from Hyderabad</td><td>14</td><td>6</td><td>2.333</td><td></td></tr><tr><th>7) <i>Zootecus agrensis</i> Kur. r 1856 - Malakozoologische Blätter, 2: 107</th><td>India: Agra</td><td>16</td><td>6</td><td>2.666</td><td>9</td></tr><tr><th>8) <i>Zootecus estellus</i> Benson, 1857 - A.M.N.H. ser. 2, 19: 327</th><td>Punjab; Sindh; Rajasthan; Andhra Pradesh</td><td>18</td><td>6</td><td>3</td><td>8</td></tr><tr><th>9) <i>Zootecus pertica</i> Benson, 1857 - A.M.N.H. ser. 2, 19: 328</th><td>Sindh</td><td>20</td><td>5</td><td>4</td><td>10</td></tr></tbody></table>
Dataset for "On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles"
<p>Data for Kulmala et al. (2024 )"On the potential of the Cluster Ion Counter (CIC) to observe local new particle formation, condensation sink and growth rate of newly formed particles" (https://doi.org/10.5194/ar-2024-14).</p> <p>Included in the file are number concentrations of sub-2 nm ions and 2-2.3 nm ions measured with Cluster Ion Counter (CIC) and Neutral cluster and Air Ion Spectrometer (NAIS) at SMEAR II station in Hyytiälä, Finland. Concentrations of 1-2 nm ions measured with the NAIS are also included. Sub-2 nm (2-2.3 nm) ion concentrations measured with CIC are refered as Channel 1 (Channel 2-Channel 3) in the .csv file.</p> <p>Contact Santeri Tuovinen (santeri.tuovinen@helsinki.fi) for more details.</p>
Molecular Dynamics Trajectories Exploring the Impact of Phosphorylation on the Physiological Form of Human alpha-Synuclein in Aqueous Solution
<h3>Primary data for the publication "Impact of Phosphorylation on the Physiological Form of Human alpha-Synuclein in Aqueous Solution" by de Bruyn, Dorn, Rossetti, Fernandez, Outeiro, Schulz and Carloni. Submitted to the Journal of Chemical Information and Modeling.</h3> <p>Included are all GROMACS input files, parameterised topologies, starting and final configurations, and trajectories for the lowest temperature replica (at 300 K, lowest of 32 replicas between 300-500 K exchanging according to the REST2 algorithm (Wang et al. 2011)). The data is split into three archives:</p> <ol> <li><strong>all_atom_trajectories.zip</strong> <ul> <li>contains all input files and all atom trajectories including solvent</li> <li>trajectories written at 100 ps intervals</li> </ul> </li> <li><strong>protein+ion_trajectories.zip</strong> <ul> <li>contains configuration/non-parameterised topologies and trajectories excluding solvent, but including ions</li> <li>trajectories written at 10 ps intervals</li> </ul> </li> <li><strong>additional_simulations.zip</strong> <ul> <li>contains the all atom trajectories and input files, and</li> <li>solvent-free trajectories above,</li> <li>for the additional simulations in the Supplemental Information of the article: <ul> <li>includes the DES-Amber-based simulations with 64 replicas between 300-600 K, and</li> <li>a99SB-<em>disp</em>-based simulations</li> </ul> </li> </ul> </li> </ol> <p> </p> <p>Folders are named according to the following top level scheme:</p> <ul> <li><strong>DES-Amber simulations/</strong> Simulations created using the DES-Amber force field (Tucker et al. 2022)</li> <li><strong>a99SB-<em>disp</em> simulations/</strong> SImulations created using the a99SB-<em>disp</em> force field for Intrinsically Disordered Proteins (IDPs) (Robustelli et al. 2018)</li> </ul> <p>Sub-folders follow the following scheme:</p> <ul> <li><strong>AS/</strong> Simulations of the physiological form of <em>wild-type </em>Human α-Synuclein <ul> <li>unphosphorylated</li> </ul> </li> <li><strong>pAS/</strong> Simulations of the physiological form of <em>wild-type </em>Human α-Synuclein <ul> <li>phosphorylated at S129</li> <li>with double negative charge</li> </ul> </li> <li><strong>pASH/</strong> Simulations of the physiological form of <em>wild-type </em>Human α-Synuclein (a99SB-<em>disp</em> simulations only) <ul> <li>phosphorylated at S129</li> <li>with a single negative charge (monoprotonated)</li> </ul> </li> </ul> <p> </p>
Linked collectors and determiners for: ' Endless forms most beautiful': taxonomic revision of the planarian Geoplana vaginuloides (Darwin, 1844) and discovery of numerous congeners (Platyhelminthes: Tricladida).
Natural history specimen data linked to collectors and determiners held within, "' Endless forms most beautiful': taxonomic revision of the planarian Geoplana vaginuloides (Darwin, 1844) and discovery of numerous congeners (Platyhelminthes: Tricladida)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/9dd11965-9958-4665-aef8-d4b9d8d458f0">https://bionomia.net/dataset/9dd11965-9958-4665-aef8-d4b9d8d458f0</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/9dd11965-9958-4665-aef8-d4b9d8d458f0">https://gbif.org/dataset/9dd11965-9958-4665-aef8-d4b9d8d458f0</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Type specimens of lichen-forming fungi (H).
Natural history specimen data linked to collectors and determiners held within, "Type specimens of lichen-forming fungi (H)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/b70fb651-6d0c-4856-90a7-89a08fa458f8">https://bionomia.net/dataset/b70fb651-6d0c-4856-90a7-89a08fa458f8</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/b70fb651-6d0c-4856-90a7-89a08fa458f8">https://gbif.org/dataset/b70fb651-6d0c-4856-90a7-89a08fa458f8</a>. Formatted as a Frictionless Data package.
FIG. 4. — s in Folsomia najtae n. sp. (Collembola: Isotomidae) - a new species with 'mobile' forms from the Far East of Russia
FIG. 4. — s-chaetae and macrochaetae on Abd. IV-VI of F. setula Christiansen & Tucker, 1977 (A) and F. orientalis Martynova, 1977 (B). Abbreviation: see Material and methods. Scale bar: 0.1 mm.
FIG. 3. — A-D, Folsomia najtae n in Folsomia najtae n. sp. (Collembola: Isotomidae) - a new species with 'mobile' forms from the Far East of Russia
FIG. 3. — A-D, Folsomia najtae n. sp.: variability of PAO (A); s-chaetae and macrochaetae on tergites of Abd.II-VI (B) and Th.II,III and Abd.I (C), apical part of leg 3 (D); E, F, F. setula Christiansen & Tucker, 1977, dens, lateral view (E), PAO (F); G, F. orientalis Martynova, 1977 furca, lateral view. Abbreviations: see Material and methods. Scale bars: A, D-F, 0.03 mm; B, C, 0.02 mm; G, 0.05 mm.
FIG. 2. — Folsomia najtae n in Folsomia najtae n. sp. (Collembola: Isotomidae) - a new species with 'mobile' forms from the Far East of Russia
FIG. 2. — Folsomia najtae n. sp.: A, B, appearance of juvenile specimens of normal (A) and mobile (B) forms (both of about 0.9 mm); C, D, furca of normal (C) and mobile (D) forms; E, G, anterior half of head in normal (E), mobile form (F), and juvenile individual (G) of 0.6 mm length. Abbreviations: see Material and methods. Scale bars: A, B, 0.3 mm; C-G, 0.05 mm.
FIGURE 20 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 20. Morphological details of male Mecopoda angusta (CH3697). A pronotum dorsal view, B pronotum, lateral view, C cercus. Scale 1 mm.
FIGURE 23 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 23. Mecopoda paucidens sp. nov.: habitus (A, D), mirror area of right tegmen (B, E), stridulatory file of left tegmen (C, F).—A–C: male from Gunung Lawu, Java; D–F: holotype male from Timor. The thin lines mark the measuring tracks (A–E) or the borders between bulks of five teeth (C, F).
FIGURE 17 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 17. Male subgenital plate, ventral view, in Mecopoda species. A M angusta (CH3697), B M. dilatata, type, C M. divergens, NHW.
FIGURE 11 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 11. Stridulatory files in Mecopoda and Eumecopoda. A M. niponensis niponensis, lectotype, B M. niponensis vietnamica subsp. nov., holotype, C M. himalaya, CH3737 (Malaysia), D M. himalaya (=M. ampla malayensis, holotype), E M. himalaya (=M. ampla javaensis, holotype), F M. himalaya (=M. fallax aequatorialis, holotype), G M. macassariensis, holotype, H M. fallax, Thailand, I M. stridulata stridulata, CRTmeceloM02 (Borneo), J M. stridulata stridulata, holotype, K M. paucidens sp. nov., (Java), L M. sismondoi sp. nov., holotype, M M. javana, neotype, N M. javana, Sri Lanka, O M. mahindai sp. nov., holotype, P M. angusta, CH3697, Q M. dilatata, ORT 2005/413 (Borneo), R E. cyrtoscelis zhantievi subsp. nov., holotype, S M. prominens, holotype, T M. ampla ampla, holotype. Scale 1 mm.
FIGURE 7 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 7. Oscillograms of the calling songs of species of the Mecopoda niponensis subgroup. Details (1 s sections). In M. himalaya synchronous registration of movement of left tegmen and sound (upper line: upward deflection indicating opening, downward closing; lower line: sound).
FIGURE 10 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 10. Oscillograms of the calling songs of Mecopoda angusta and Eumecopoda cyrtoscelis. Overview (12 s sections) and details (1 s sections). Figures of Eumecopoda c. cyrtoscelis based on figures in Helfert & Sänger (2007), all sound recordings the figures are made from seem to be lost (Römer, email 2019/10/23).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.