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468
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Dataset results
468 results for “Spikes”
External RNA Control Consortium (ERCC) spikes in RNA sequencing (RNA-Seq) data normalization: transcriptome analysis of yellow fever virus-infected cells
GEO Series GSE99081. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth [Spike-in_RNAseq]
GEO Series GSE309990. Saccharomyces cerevisiae. 14 samples. Type: Expression profiling by high throughput sequencing.
Culture KS Riboflavin spike experiment Version 2.0 10 mL samples Metabolomics Data
Open the record for dataset details and reuse information.
Improved spike-in normalization clarifies the relationship between active histone modifications and transcription
GEO Series GSE286875. Homo sapiens; Mus musculus. 220 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The study investigates which genes change within cells when using a coronavirus spike protein for 48 h.
GEO Series GSE279566. Homo sapiens. 4 samples. Type: Expression profiling by array.
Comparative transcriptional profiling of organs of the barley spike
GEO Series GSE16754. Hordeum vulgare. 12 samples. Type: Expression profiling by array.
Spike variant predictions
<p>Spike variant glycosylation predictions. (spike_mut_idx.v3.xlsx)</p> <p>> Glycoimpact*: likelihood the glycosylation of a proximal site is perturbed </p> <p>> mannoseDist*: aggregate Fisher log-OR for any high-mannose (>5mannose) structure (taken from IMRs). LIkelihood high-mannose structures, in general, will increase or decrease</p> <p>> IMR - Expected Change: a combination of proximity information with mannoseDist to estimate joint effect</p> <p>> IMR/InSaNNE prediction: predictions of differential glycosylation from IMRs or InSaNNE respectively</p> <p> </p> <p>*_seq refers to sequence-based predictions, _str refers to structure-based predictions</p> <p>Generating R code is also provided without raw-data</p> <p>-----</p> <p>Update</p> <p>v4: Mannose/Complex column updated to Mannose/ Complex+hybrid in v5</p> <p>v5: Mannose+hybrid / Complex column added (one prediction changed). This column is more relevant to the validation MS observation.</p> <p>---</p> <p>Added 8/4/2021</p> <p>> Results_untilGamma...xlsx</p> <p>Quantified using label-free analysis, which is semi-quantitative. We use precursor (peptide/MS1) peak area for quantitation, the spectral counts are also included. Peptide numbers, which give you the extent of sampling at each N-glycosylation site. We use Mean +/- SEM for the proportions of N-glycan variants (unoccupied, complex and high-mannose/hybrid).</p> <p>Other column headings should be self-explanatory, but please let me know if in doubt.</p> <p>The “Result” sheet is what you should look at. Other sheets are “raw” results. The first sheet “Sequences”, has all the sequence information. The color-coding is the regular one for N-glycans.</p>
Phytochemicals from AYUSH-64 screened against main protease and spike protein of Omicron variant of SARS-CoV-2 using ensemble docking and molecular dynamics approach
<p>Data for "Phytochemicals from AYUSH-64 screened against main protease and spike protein of Omicron variant of SARS-CoV-2 using ensemble docking and molecular dynamics approach" </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.