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Text-fig. 13. a, d–g: Acer aemilianum. b, c: Acer palmatum and A. sieboldianum modern leaves (NMNS Cleared Leaf Database). a: Oriolo MSF 661, 7-lobed leaf. b: Specimen U 1049, lobe detail showing finely serrate leaf margin. c: Specimen T 0246, 9-lobed leaf with coarsely serrate leaf margin. d: Oriolo MSF 645-1, 9-lobed leaf with two small additional lobes. e: Oriolo MSF 645. f: Oriolo MSF 660, 9-lobed specimen. g: Oriolo MSF 660-1. White arrows indicate position along lamina lobes where marginal serration starts. Scale bars 10 mm (a–c, f, g), 50 mm (d, e). in The Late Early Pleistocene Flora Of Oriolo, Faenza (Italy): Assembly Of The Modern Forest Biome
Text-fig. 13. a, d–g: Acer aemilianum. b, c: Acer palmatum and A. sieboldianum modern leaves (NMNS Cleared Leaf Database). a: Oriolo MSF 661, 7-lobed leaf. b: Specimen U 1049, lobe detail showing finely serrate leaf margin. c: Specimen T 0246, 9-lobed leaf with coarsely serrate leaf margin. d: Oriolo MSF 645-1, 9-lobed leaf with two small additional lobes. e: Oriolo MSF 645. f: Oriolo MSF 660, 9-lobed specimen. g: Oriolo MSF 660-1. White arrows indicate position along lamina lobes where marginal serration starts. Scale bars 10 mm (a–c, f, g), 50 mm (d, e).
Fig. 3. – A in Additional taxonomic and nomenclatural notes on New Caledonian Eugenia (Myrtaceae)
Fig. 3. – A. Eugenia poimbailensis Guillaumin (Tipindjé, 19.XI.2011); B. Eugenia pubiflora N. Snow & Callm. (Bois du Sud, 19.XII.2018). [Photo: H. Vandrot]
Fig. 2 in Additional taxonomic and nomenclatural notes on New Caledonian Eugenia (Myrtaceae)
Fig. 2. – Eugenia huerlimannii Guillaumin (Creek Pernod): A. Flowers; B. Fruits. Eugenia kaalensis Guillaumin: C. Leaves (Ouaco/Onajiele, 3.X.2009); D. Buds and flower (Taom sud Kaala-Gomen, 23.X.2015).
Fig. 1 in Additional taxonomic and nomenclatural notes on New Caledonian Eugenia (Myrtaceae)
Fig. 1. – Eugenia bullata Pancher ex Guillaumin (Goro, Yaté, 30.VII.2011): A. Leaves; B. Inflorescence. Eugenia daenikeri Guillaumin: C. Leaves (presqu'île Porokoé, 28.I.2006); D. Flowers (presqu'île Koumourou, 13.XI.2006). Eugenia gacognei Montrouz. (Tontouta, 4.XI.2004); E. Leaves; F. Flowers.
Distinct chromatin signatures of DNA hypomethylation in aging and cancer (Datasets and additional files)
<p>Cancer is an aging-associated disease but the underlying molecular links between these processes are still largely unknown. Gene promoters that become hypermethylated in aging and cancer share a common chromatin signature in ES cells. In addition, there is also global DNA hypomethylation in both processes. However, any similarities of the regions where this loss of DNA methylation occurs is currently not well characterized, nor is it known whether such regions also share a common chromatin signature in aging and cancer.<strong> </strong>To address this issue we analysed TCGA DNA methylation data from a total of 2,311 samples, including control and cancer cases from patients with breast, kidney, thyroid, skin, brain and lung tumors and healthy blood, and integrated the results with histone, chromatin state and transcription factor binding site data from the NIH Roadmap Epigenomics and ENCODE projects. We identified 98,857 CpG sites differentially methylated in aging, and 286,746 in cancer. Hyper- and hypomethylated changes in both processes each had a similar genomic distribution across tissues and displayed tissue-independent alterations. The identified hypermethylated regions in aging and cancer shared a similar bivalent chromatin signature. In contrast, hypomethylated DNA sequences occurred in very different chromatin contexts. DNA hypomethylated sequences were enriched at genomic regions marked with the activating histone posttranslational modification H3K4me1 in aging, whilst in cancer, loss of DNA methylation was primarily associated with the repressive H3K9me3 mark.<strong> </strong></p>
FIGURE 4. Rollo H in Rollo H. Beck's Visits to Isla Guadalupe, Mexico, with Additions and Corrections to the Island's Avifauna
FIGURE 4. Rollo H. Beck's field notes from Isla Guadalupe, 3 August 1912 (CAS). See Appendix A for transcription.
FIGURE 1 in Rollo H. Beck's Visits to Isla Guadalupe, Mexico, with Additions and Corrections to the Island's Avifauna
FIGURE 1. Labels on the type specimens of Oceanodroma macrodactyla, the only bird specimens saved from the fire following the 1906 San Francisco earthquake. Photo courtesy of CAS.
FIGURE 2 in Rollo H. Beck's Visits to Isla Guadalupe, Mexico, with Additions and Corrections to the Island's Avifauna
FIGURE 2. Specimens collected on 3 August 1912 by Rollo H. Beck labeled Oceanodroma macrodactyla. Photos courtesy AMNH.
Рис. 5. Дополнительные структуры, служаЩие укреплению Замочного краЯ и раковины у Laternula elliptica: А – дополнительнаЯ поддерживаюЩаЯ пластинка прикрывает макушечную Щель; Б – утолЩение ранее поврежденного краЯ раковины; В – пример воЗникновениЯ двух поддерживаюЩих пластинок. ОбоЗначениЯ: мщ – макушечнаЯ Щель; хр – хондрофор; ппЛ – поддерживаюЩаЯ пластинка; дпЛ – дополнительные пластинки; уКр – утолЩениЯ Задне-дорсального краЯ и краЯ сифонального ЗиЯниЯ. Fig. 5. Additional structures serving for consolidation of hinge margin and for restoration of shell edge in Laternula elliptica: А – the umbonal crack covered by additional buttress; Б – thickening of damaged edge; В – appearance of two supporting plates. Notes: мщ – umbonal crack; хр – chondrophore; ппЛ – buttress; дпЛ – additional supporting plate; уКр – thickening of posterior-dorsal margin. in Species of warm-water origin Laternula elliptica (King, 1832) (Mollusca: Bivalvia: Laternulidae), a widespread mollusk in recent Antarctica
Рис. 5. Дополнительные структуры, служаЩие укреплению Замочного краЯ и раковины у Laternula elliptica: А – дополнительнаЯ поддерживаюЩаЯ пластинка прикрывает макушечную Щель; Б – утолЩение ранее поврежденного краЯ раковины; В – пример воЗникновениЯ двух поддерживаюЩих пластинок. ОбоЗначениЯ: мщ – макушечнаЯ Щель; хр – хондрофор; ппЛ – поддерживаюЩаЯ пластинка; дпЛ – дополнительные пластинки; уКр – утолЩениЯ Задне-дорсального краЯ и краЯ сифонального ЗиЯниЯ. Fig. 5. Additional structures serving for consolidation of hinge margin and for restoration of shell edge in Laternula elliptica: А – the umbonal crack covered by additional buttress; Б – thickening of damaged edge; В – appearance of two supporting plates. Notes: мщ – umbonal crack; хр – chondrophore; ппЛ – buttress; дпЛ – additional supporting plate; уКр – thickening of posterior-dorsal margin.
РИС. 8. Примеры проблем с иЗображением при работе на СЭМ. А, В. Засветка раЗличных частей раковин глохидиев (А. Anodonta anatina (=Colletopterum), оЗ. Красное, ХакасиЯ. В. Inversiunio reinianus, оЗ. Бива, о-в Хонсю, ЯпониЯ). C. РаЗнаЯ скорость сканированиЯ (слева – очень быстраЯ, справа – медленнаЯ) наружной поверхности глохидиЯ (Anodonta cygnea, р. Ялма, МосковскаЯ обл.). D. Артефакты в виде гориЗонтальных полос вследствие накоплениЯ отрицательного ЗарЯда при недостаточном напылении внутренней поверхности глохидиЯ (Nodularia douglasiae, ПетровскаЯ протока, бассейн р. Амур, Хабаровский кр.). МасШтаб 50 мкм (А, В), 2 мкм (С), 5 мкм (D). Микроскопы Zeiss EVO 40 (А, С, D), Zeiss MERLIN (В), напыление углеродом (А, С), хромом (В, D). FIG. 8. Illustration of different problems with SEM images. A, B. Overall illumination of some glochidia shells parts (A. Anodonta anatina (= Colletopterum), Krasnoe Lake, Khakassia. B. Inversiunio reinianus, Biwa Lake, Honshu Island, Japan). C. Different scanning speed (faster on the left and slower on the right) of the exterior glochidia valve (Anodonta cygnea, Yalma River, Moscow Oblast). D. Artifacts as horizontal stripes because of additional accumulation of a negative charge due to insufficient coating of the interior glochidia valve (Nodularia douglasiae, Petrovskaya channel, Amur River basin, Khabarovsk Krai). Scale bars 50 μm (A, B), 2 μm (C), 5 μm (D). Zeiss EVO 40 (A, C, D) and Zeiss MERLIN (B) microscopes, sputter coating with carbon (A, C) and chromium (B, D). in Методика подготовки раковин глохидиев (Bivalvia, Unionidae) длЯ работы на сканируюЩем Электронном микроскопе
РИС. 8. Примеры проблем с иЗображением при работе на СЭМ. А, В. Засветка раЗличных частей раковин глохидиев (А. Anodonta anatina (=Colletopterum), оЗ. Красное, ХакасиЯ. В. Inversiunio reinianus, оЗ. Бива, о-в Хонсю, ЯпониЯ). C. РаЗнаЯ скорость сканированиЯ (слева – очень быстраЯ, справа – медленнаЯ) наружной поверхности глохидиЯ (Anodonta cygnea, р. Ялма, МосковскаЯ обл.). D. Артефакты в виде гориЗонтальных полос вследствие накоплениЯ отрицательного ЗарЯда при недостаточном напылении внутренней поверхности глохидиЯ (Nodularia douglasiae, ПетровскаЯ протока, бассейн р. Амур, Хабаровский кр.). МасШтаб 50 мкм (А, В), 2 мкм (С), 5 мкм (D). Микроскопы Zeiss EVO 40 (А, С, D), Zeiss MERLIN (В), напыление углеродом (А, С), хромом (В, D). FIG. 8. Illustration of different problems with SEM images. A, B. Overall illumination of some glochidia shells parts (A. Anodonta anatina (= Colletopterum), Krasnoe Lake, Khakassia. B. Inversiunio reinianus, Biwa Lake, Honshu Island, Japan). C. Different scanning speed (faster on the left and slower on the right) of the exterior glochidia valve (Anodonta cygnea, Yalma River, Moscow Oblast). D. Artifacts as horizontal stripes because of additional accumulation of a negative charge due to insufficient coating of the interior glochidia valve (Nodularia douglasiae, Petrovskaya channel, Amur River basin, Khabarovsk Krai). Scale bars 50 μm (A, B), 2 μm (C), 5 μm (D). Zeiss EVO 40 (A, C, D) and Zeiss MERLIN (B) microscopes, sputter coating with carbon (A, C) and chromium (B, D).
Figure 5 in Fifty-one new additions to the butterfly (Lepidoptera: Rhopalocera) fauna of Tripura, North-east India
Figure 5. Photographic records of: 37. Jamides elpis pseudelpis. 38. Lestranicus transpectus. 39. Nacaduba beroe gythion. 40-41. Ticherra acte acte. 42. Deudorix epijarbas epijarbas. 43. Creon cleobis cleobis. 44. Dacalana penicilligera. 45-46. Pratapa deva lila. 47. Mota massyla. 48. Mimathyma ambica ambica. / Registros fotográficos de: 37. Jamides elpis pseudelpis. 38. Lestranicus transpectus. 39. Nacaduba beroe gythion. 40-41. Ticherra acte acte. 42. Deudorix epijarbas epijarbas. 43. Creon cleobis cleobis. 44. Dacalana penicilligera. 45-46. Pratapa deva lila. 47. Mota massyla. 48. Mimathyma ambica ambica.
Рис. 1. Карта-схема литоральных Экспедиций Института биологии морЯ (Национального научного центра морской биологии им. А.В. Жирмунского ДВО РАН) и Дальневосточного государственого университета (Дальневосточного федерального университета) (по: Ivanova, Tsurpalo [2012], с дополнениЯми). Fig. 1. A schematic map of intertidal expeditions performed by the Institute of Marine Biology (A.V. Zhirmunsky National Scientific Centre of Marine Biology FEB RAS) and Far Eastern State University (Far Eastern Federal University) (after Ivanova, Tsurpalo [2012], with additions). in Bivalve mollusks of the intertidal zone of the Far Eastern seas of Russia
Рис. 1. Карта-схема литоральных Экспедиций Института биологии морЯ (Национального научного центра морской биологии им. А.В. Жирмунского ДВО РАН) и Дальневосточного государственого университета (Дальневосточного федерального университета) (по: Ivanova, Tsurpalo [2012], с дополнениЯми). Fig. 1. A schematic map of intertidal expeditions performed by the Institute of Marine Biology (A.V. Zhirmunsky National Scientific Centre of Marine Biology FEB RAS) and Far Eastern State University (Far Eastern Federal University) (after Ivanova, Tsurpalo [2012], with additions).
Рис. 6. Ювенильные раковины Laternula elliptica: А1, А3 – левые створки, внешний вид, H×L=3.0×4.4 мм; А2 – вид со стороны дорсального краЯ на сдвоенные створки, обраЗуюЩие по Заднему краю ЗиЯние; А4 – Замок, соединЯюЩий фрагменты раЗрушенных створок (штриховка); Б1 – праваЯ створка, внешний вид, H×L=8.5×14.0 мм; Б2 – внутреннЯЯ поверхность правой створки. Фрагменты раковины вЗрослого моллюска (L=69.7 мм): В1 – вид со стороны дорсального краЯ; В2 – фрагмент правой створки, вид сбоку. ОбоЗначениЯ: ЗК – Задний край; дК – дорсальный край; сКп – складки периостракума; м – макушка; мщ – макушечнаЯ Щель; пр – продиссоконх; хр – хондрофор; ппЛ – поддерживаюЩаЯ пластинка; дпЛ – дополнительнаЯ пластинка; син – синус. Fig. 6. Juvenile shells of Laternula elliptica: A1, A3 – left valves, external view, H×L=3.0×4.4 mm; A2 – paired valves, dorsal view, showing gape through which the siphon project; A4 – hinge with chondrophore and buttress, internal view; Б1– right valve, external view, H×L=8.5×14.0 mm; Б2 – right valve, internal view. Adult shell (L=69.7 мм): B1 – fragment of right valve, dorsal view; B2 – fragment of right valve, lateral view on umbo. Notes: ЗК – posterior margin; дК – dorsal margin; сКп – periostracal wrinkles; м – umbo; мщ – umbonal crack; пр – prodissoconch; хр – chondrophore; ппЛ – buttress; дпЛ – additional supporting plate; син – sinus. in Species of warm-water origin Laternula elliptica (King, 1832) (Mollusca: Bivalvia: Laternulidae), a widespread mollusk in recent Antarctica
Рис. 6. Ювенильные раковины Laternula elliptica: А1, А3 – левые створки, внешний вид, H×L=3.0×4.4 мм; А2 – вид со стороны дорсального краЯ на сдвоенные створки, обраЗуюЩие по Заднему краю ЗиЯние; А4 – Замок, соединЯюЩий фрагменты раЗрушенных створок (штриховка); Б1 – праваЯ створка, внешний вид, H×L=8.5×14.0 мм; Б2 – внутреннЯЯ поверхность правой створки. Фрагменты раковины вЗрослого моллюска (L=69.7 мм): В1 – вид со стороны дорсального краЯ; В2 – фрагмент правой створки, вид сбоку. ОбоЗначениЯ: ЗК – Задний край; дК – дорсальный край; сКп – складки периостракума; м – макушка; мщ – макушечнаЯ Щель; пр – продиссоконх; хр – хондрофор; ппЛ – поддерживаюЩаЯ пластинка; дпЛ – дополнительнаЯ пластинка; син – синус. Fig. 6. Juvenile shells of Laternula elliptica: A1, A3 – left valves, external view, H×L=3.0×4.4 mm; A2 – paired valves, dorsal view, showing gape through which the siphon project; A4 – hinge with chondrophore and buttress, internal view; Б1– right valve, external view, H×L=8.5×14.0 mm; Б2 – right valve, internal view. Adult shell (L=69.7 мм): B1 – fragment of right valve, dorsal view; B2 – fragment of right valve, lateral view on umbo. Notes: ЗК – posterior margin; дК – dorsal margin; сКп – periostracal wrinkles; м – umbo; мщ – umbonal crack; пр – prodissoconch; хр – chondrophore; ппЛ – buttress; дпЛ – additional supporting plate; син – sinus.
Рис. 4. Пресноводные двустворчатые моллюски иЗ раскопа 2 поселениЯ ЧернЯтино-2: А, B – фрагменты жемчужниц Dahurinaia dahurica, C–G – створки перловиц Middendorffinaia mongolica. Масштабные линейки 1 см. in Additional data on mollusks of the archaeological site Chernyatino-2 (Primorye)
Рис. 4. Пресноводные двустворчатые моллюски иЗ раскопа 2 поселениЯ ЧернЯтино-2: А, B – фрагменты жемчужниц Dahurinaia dahurica, C–G – створки перловиц Middendorffinaia mongolica. Масштабные линейки 1 см.
Рис. 3. Фрагменты раковин брюхоногих Cipangopaludina иЗ раскопа 2 поселениЯ ЧернЯтино-2. МасштабнаЯ линейка 1 см. in Additional data on mollusks of the archaeological site Chernyatino-2 (Primorye)
Рис. 3. Фрагменты раковин брюхоногих Cipangopaludina иЗ раскопа 2 поселениЯ ЧернЯтино-2. МасштабнаЯ линейка 1 см.
Рис. 2. Брюхоногие моллюски иЗ раскопа 2 поселениЯ ЧернЯтино-2: A–C – Discus perspectivus, D, E – Juga tegulata, F – Juga amurensis. Масштабные линейки 1 мм (A–C) и 5 мм (D–F). in Additional data on mollusks of the archaeological site Chernyatino-2 (Primorye)
Рис. 2. Брюхоногие моллюски иЗ раскопа 2 поселениЯ ЧернЯтино-2: A–C – Discus perspectivus, D, E – Juga tegulata, F – Juga amurensis. Масштабные линейки 1 мм (A–C) и 5 мм (D–F).
Fig. 1 in Colias caucasica balcanica (Pieridae) rediscovered in Montenegro, with additional new records for Serbia
Fig. 1. Antheraea yamamai (Guérin-Méneville, 1861) male, Montenegro, Pivska planina Mt., Polje Crkvičko village, Rudine, 07.08.2015, in coll. NMNHS. Photo: Stoyan Beshkov.
Figure 1 in First record of River Warbler Locustella fluviatilis and additional records for Plain Nightjar Caprimulgus inornatus and Lesser Masked Weaver Ploceus intermedius in Djibouti
Figure 1. Male Lesser Masked Weaver Ploceus intermedius, Camp Lemonnier, Djibouti, 5 February 2016, in the late stages of definitive moult showing orange-chestnut hindcrown feathers and diagnostic creamy-white eye (Carla J. Dove)
Fig. 1 in Additional data on mollusks of the archaeological site Chernyatino-2 (Primorye)
Fig. 1. Plan-scheme of the ancient settlement Chernyatino-2: A – plan of the north-eastern part of the settlement; В – situational plan of the excavations.
TreeGOER 2024 Expansion: Expansion with additional tree and bamboo species identified via the World Checklist of Vascular Plants
<p>The database provides globally observed environmental ranges for an additional list of species not included in the <a href="https://zenodo.org/records/7922927"><strong>TreeGOER database</strong></a>. Candidate species were identified via the <a href="https://powo.science.kew.org/about-wcvp"><strong>World Checklist of Vascular Plants</strong> (WCVP) version 11</a>. Many of the additional species were hybrids or bamboo species that were excluded from <strong>GlobalTreeSearch</strong>. Taxonomical details given in a separate file correspond to information provided by the WCVP, as well as information on the life form of each species. Field <em>n</em> in the taxonomical data sets shows the number of records used to provide range information for the expansion of TreeGOER.</p> <p>Tree species were filtered from the WCVP by selecting species records with an empty <em>acceptedNameUsageID</em> field (a field that refers to a current name if not empty) and afterwards filtering for records where the <em>lifeform_description</em> field contained one from the categories of <u>tree</u> (3580 candidate species for the TreeGOER 2024 expansion), shrub or <u>tree</u> (3129), scrambling shrub or <u>tree</u> (138), climbing shrub or <u>tree</u> (58), succulent shrub or <u>tree</u> (40), succulent <u>tree</u> (37), scrambling <u>tree</u> (32), liana or <u>tree</u> (6), , tuberous <u>tree (3)</u>, tuberous shrub or <u>tree</u> (3), semisucculent <u>tree</u> (2), or semisucculent shrub or <u>tree</u> (3)</p> <p>Species that could <strong><u>not</u></strong> be matched with the <a href="https://tools.bgci.org/global_tree_search.php">GlobalTreeSearch database (version 1.7)</a> were candidates for the expansion of species documented in TreeGOER. Standardization to the WCVP was achieved via the <a href="https://bsapubs.onlinelibrary.wiley.com/doi/full/10.1002/aps3.11388">WorldFlora R package</a>, using the same scripts available in this Rpub: . <a href="https://rpubs.com/Roeland-KINDT/1134151">https://rpubs.com/Roeland-KINDT/1134151</a>.</p> <p>Occurrence data were obtained from the <strong>Global Biodiversity Information Facility</strong> via the following downloads. Downloads were facilitated by prior identification of the <strong>GBIF usageKey</strong> via the <a href="https://docs.ropensci.org/rgbif/reference/name_backbone.html">rgbif::name_backbone</a> function, afterwards filtering records that matched with a current species name in the GBIF backbone taxonomy, using package <a href="https://cran.r-project.org/package=rgbif">rgbif</a> version 3.7-9.</p> <ul> <li>batch 1: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.upqqve">https://doi.org/10.15468/dl.upqqve</a></li> <li>batch 2: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.fhqdpg">https://doi.org/10.15468/dl.fhqdpg</a></li> <li>batch 3: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.w3k3n7">https://doi.org/10.15468/dl.w3k3n7</a></li> <li>batch 4: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.xqp7qg">https://doi.org/10.15468/dl.xqp7qg</a></li> <li>batch 5: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.t92qsg">https://doi.org/10.15468/dl.t92qsg</a></li> <li>batch 6: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.7ug5z5">https://doi.org/10.15468/dl.7ug5z5</a></li> <li>batch 7: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.8tp9p8">https://doi.org/10.15468/dl.8tp9p8</a></li> <li>batch 8: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ewdj7m">https://doi.org/10.15468/dl.ewdj7m</a></li> <li>batch 9: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.gccja8">https://doi.org/10.15468/dl.gccja8</a></li> <li>batch 10: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.jg7gzs">https://doi.org/10.15468/dl.jg7gzs</a></li> <li>batch 11: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6gww7b">https://doi.org/10.15468/dl.6gww7b</a></li> <li>batch 12: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.9h8axh">https://doi.org/10.15468/dl.9h8axh</a></li> <li>batch 13: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.mswf23">https://doi.org/10.15468/dl.mswf23</a></li> </ul> <p> </p> <p>For bamboo species, identified by a similar process as documented above but now filtering in the WCVP for the lifeform of <u>bamboo</u>, occurrence data were obtained from the Global Biodiversity Information Facility via the following downloads:</p> <ul> <li>batch 1: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6xt5qu">https://doi.org/10.15468/dl.6xt5qu</a></li> <li>batch 2: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.tdmva4">https://doi.org/10.15468/dl.tdmva4</a></li> <li>batch 3: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.u2gpxv">https://doi.org/10.15468/dl.u2gpxv</a></li> </ul> <p> </p> <p>After downloading the GBIF occurrence data sets, the same procedures were used to calculate the globally observed environmental ranges as in the TreeGOER database which have been described by Kindt, R. (2023). <strong>TreeGOER: A database with globally observed environmental ranges for 48,129 tree species</strong>. Global Change Biology, 00, 1–16. <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914</a>. </p> <p> </p> <p>A new check for the availability of species observations was made also for species listed in the <a href="https://worldagroforestry.org/output/globalusefulnativetrees"><strong>GlobalUsefulNativeTrees database</strong></a>, but not in TreeGOER. Taxonomical details for these species are given as a 'set 2' in the database.</p> <p>Downloads from the Global Biodiversity Information Facility were:</p> <ul> <li>batch 1: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ajwegx">https://doi.org/10.15468/dl.ajwegx</a></li> <li>batch 2: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.hxk5be">https://doi.org/10.15468/dl.hxk5be</a></li> </ul> <p> </p> <p>Version 2024.06 included a new field in the Tmo10 zones files of 'A18' that flags 717 species that occur in zones where all months have a mininum temperature of 18 degrees or above, using similar methods as the 2024.06 version of TreeGOER.</p> <p> </p> <p>The development of the <strong>TreeGOER 2024 Expansion</strong> was supported by the <strong>Darwin Initiative</strong> to project DAREX001 of <em>Developing a Global Biodiversity Standard certification for tree-planting and restoration</em>, by <strong>Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia</strong> to the <em>Provision of Adequate Tree Seed Portfolio</em> project in Ethiopia, by the <strong>Green Climate Fund</strong> through the IUCN-led <em>Transforming the Eastern Province of Rwanda through Adaptation</em> project and through the <em>Readiness proposal on Climate Appropriate Portfolios of Tree Diversity for Burkina Faso</em>, by the <strong>Bezos Earth Fund</strong> to the <em>Bezos Quality Tree Seed for Africa in Kenya and Rwanda</em> project and by the <strong>German International Climate Initiative (IKI)</strong> to the regional tree seed programme on <em>The Right Tree for the Right Place for the Right Purpose in Africa</em>. When using <strong>TreeGOER 2024 Expansion</strong> in your work, cite the publication (Kindt <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">2023</a>) as well as this repository using the DOI (<a href="../doi/10.5281/zenodo.11208040">https://zenodo.org/doi/10.5281/zenodo.11208040</a>).</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.