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Dataset results
805 results for “nodulation”
Ectopic expression of NAC094 induces premature nodule senescence in Lotus japonicus.
GEO Series GSE197361. Lotus japonicus. 6 samples. Type: Expression profiling by high throughput sequencing.
Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity
GEO Series GSE135971. Glycine max. 18 samples. Type: Expression profiling by high throughput sequencing.
Genes differentially expressed in wild-type Medicago truncatula plants during nodulation
GEO Series GSE28173. Sinorhizobium meliloti; Medicago truncatula. 10 samples. Type: Expression profiling by array.
Metabolomic profiling of Bradyrhizobium diazoefficiens-induced root nodules reveals both host plant-specific and developmental signatures
GEO Series GSE79811. Bradyrhizobium diazoefficiens; Bradyrhizobium diazoefficiens USDA 110. 6 samples. Type: Expression profiling by array.
Tissue-specific transcriptome analysis in nodules of Lotus japonicus
GEO Series GSE34753. Lotus japonicus. 9 samples. Type: Expression profiling by array.
Organogenic nodule formation from internodes of Humulus lupulus
GEO Series GSE12339. Humulus lupulus. 12 samples. Type: Expression profiling by array.
Transcriptome and metabolome analysis support that nitrate primarily promotes N and C metabolism in soybean roots and reduces those in nodules.
GEO Series GSE104582. Glycine max. 12 samples. Type: Expression profiling by array.
Diagnostic value of a panel of plasma exosomal miRNAs as potential biomarkers for thyroid nodules
GEO Series GSE130512. Homo sapiens. 24 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Divergent immune microenvironments in two tumor nodules from a patient with mismatch repair-deficient prostate cancer.
GEO Series GSE246684. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity
GEO Series GSE135972. Glycine max. 36 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
A Multivariate Cell-Based Liquid Biopsy for Lung Nodule Risk Stratification: Analytical Validation and Early Clinical Evaluation
GEO Series GSE275699. Homo sapiens. 249 samples. Type: Expression profiling by high throughput sequencing.
Onchocerca-derived small RNAs in host nodules and serum
GEO Series GSE63933. Homo sapiens; Bos taurus. 5 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Regulation of gene expression during formation of nodule-like structures (NLS) in rice roots
GEO Series GSE92835. Oryza sativa. 18 samples. Type: Expression profiling by high throughput sequencing.
Stepwise evolution of root nodule symbiosis
GEO Series GSE264606. Elaeagnus umbellata; Coriaria nepalensis; Alnus trabeculosa; Populus deltoides x Populus x canadensis; Chamaecrista pumila; Medicago truncatula; Mimosa pudica. 37 samples. Type: Other; Expression profiling by high throughput sequencing.
CPOP1 is the key heme synthesis enzyme required for nodule microenvironment control and successful symbiotic nitrogen fixation in Lotus japonicus
GEO Series GSE262662. Lotus japonicus. 12 samples. Type: Expression profiling by high throughput sequencing.
Characterization of transcriptional analysis of LKB1 mutant lung nodules
GEO Series GSE137396. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Sorafenib inhibits invasion of multicellular organoids that mimic Lymphangioleiomyomatosis nodules.
GEO Series GSE234885. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Chickpea shows genotype-specific nodulation responses across soil nitrogen environment and root disease resistance categories
GEO Series GSE162321. Cicer arietinum. 36 samples. Type: Expression profiling by high throughput sequencing.
Single cell-type transcriptome profiling reveals genes that promote nitrogen fixation in the infected and uninfected cells of legume nodules
GEO Series GSE188748. Lotus japonicus. 8 samples. Type: Expression profiling by high throughput sequencing.
Data from: Pulmonary nodule detection in patients with a primary malignancy using hybrid PET/MRI: is there value in adding contrast-enhanced MR imaging?
Purpose: To investigate the added value of post-contrast VIBE (volumetric-interpolated breath-hold examination) to PET/MR imaging for pulmonary nodule detection in patients with primary malignancies. Materials and Methods: This retrospective institutional review board–approved study, with waiver of informed consent, included 51 consecutive patients who underwent 18F-fluorodeoxyglucose (FDG) PET/MR followed by PET/CT for cancer staging. In all patients, the thorax was examined with pre-and post-contrast VIBE MR with simultaneous PET acquisition. Two readers blinded to the patients' data independently recorded their level of suspicion for pulmonary nodules based on PET, pre-contrast VIBE, and fused PET/MR images (first session), and reassessed them 4-weeks later after addition of post-contrast VIBE (second session). Jackknife alternative free-response receiver-operating-characteristic (JAFROC) analysis was performed, with PET/CT as the reference standard. Results: A total of 151 pulmonary nodules (44 FDG-avid, 107 non-FDG-avid nodules) were detected on PET/CT, including 62 nodules≥5mm in diameter and 89 nodules<5mm. In the first session, the average nodule detection rate was 53.3% for all nodules, 97.7% for FDG-avid, 35.0% for non-FDG-avid nodules, 87.9% for nodules≥5mm and 29.2% for nodules<5mm. In the second session, the average detection rate was 53.3% for all nodules, 97.7% for FDG-avid, 35.0% for non-FDG-avid nodules, 85.5% for nodules≥5mm and 30.9% for nodules<5mm. The average JAFROC figure-of-merit was 0.837 in the first session and 0.848 in the second session. There were no significant differences in detection performance between sessions (P=0.48). Conclusion: The addition of post-contrast VIBE to hybrid PET/MR imaging provided no additional value in the detection of pulmonary nodules.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.