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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Epigenome comparisons reveal linkage between gene expression and developmental remodeling of chromatin domain topology
GEO Series GSE94631. Homo sapiens. 119 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genomic profiling of HIV-1 integration in microglia cells links viral integration to the topologically associated domains
GEO Series GSE223638. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Chromosome topology shapes neuronal non-CG DNA methylation to influence MeCP2-mediated enhancer repression (Bisulfite-Seq)
GEO Series GSE138613. Mus musculus. 12 samples. Type: Methylation profiling by high throughput sequencing.
Inversion of a topological domain leads to restricted changes in its gene expression and affects inter-domain communication
GEO Series GSE180617. Mus musculus. 8 samples. Type: Other.
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes
GEO Series GSE127196. Homo sapiens. 81 samples. Type: Expression profiling by high throughput sequencing; Other.
Interplay between genome topology and gene regulation during somatic cell reprogramming [HiC-seq]
GEO Series GSE96553. Mus musculus. 14 samples. Type: Other.
High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multifactorial disease loci [Cut&Run]
GEO Series GSE202473. Homo sapiens. 3 samples. Type: Other.
Argonaute2 and LaminB modulate gene expression by controlling chromatin topology (neuRNA-seq, set2)
GEO Series GSE101828. Drosophila melanogaster. 20 samples. Type: Expression profiling by high throughput sequencing.
DNA topological regulation by topoisomerase IIβ-DNA-PK interaction is important for controlled hypoxia-inducible gene expression [RNA-Seq]
GEO Series GSE285698. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
A dual role for CDK-Mediator in controlling Polycomb-dependent topology and priming genes for induction [Hi-C]
GEO Series GSE188551. Mus musculus. 6 samples. Type: Other.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [HiChIP]
GEO Series GSE100856. Homo sapiens. 4 samples. Type: Other.
In situ dissection of domain boundaries affects genome topology and gene transcription in Drosophila [RNA-seq]
GEO Series GSE136136. Drosophila melanogaster. 4 samples. Type: Expression profiling by high throughput sequencing.
Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (pCHiC)
GEO Series GSE146662. Mus musculus. 10 samples. Type: Other.
Stag2 regulates hematopoietic differentiation and self-renewal through alterations in gene expression and topological control
GEO Series GSE119366. Mus musculus. 4 samples. Type: Other.
Analysis of the DNA topology upon multiple histone H1 variants depletion by Hi-C experiments
GEO Series GSE172618. Homo sapiens. 6 samples. Type: Other.
Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [ChIP-Seq]
GEO Series GSE59597. Caenorhabditis elegans. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements
GEO Series GSE118075. Homo sapiens; Mus musculus. 144 samples. Type: Expression profiling by high throughput sequencing; Other.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [DROP-seq]
GEO Series GSE102090. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Selective oxidative protection leads to tissue topological changes orchestrated by macrophage during ulcerative colitis
GEO Series GSE231993. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons
GEO Series GSE236182. Mus musculus. 37 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.