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Supplementary material 1 from: Jażdżewska AM, Corbari L, Driskell A, Frutos I, Havermans C, Hendrycks E, Hughes L, Lörz A-N, Stransky B, Tandberg AHS, Vader W, Brix S (2018) A genetic fingerprint of Amphipoda from Icelandic waters – the baseline for further biodiversity and biogeography studies. In: Brix S, Lörz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 55–73. https://doi.org/10.3897/zookeys.731.19931
Table S1 : Explanation note: Amphipod and outgroup accession numbers in BOLD, GenBank and station data.
Supplementary material 4 from: Lörz A-N, Tandberg AHS, Willassen E, Driskell A (2018) Rhachotropis (Eusiroidea, Amphipoda) from the North East Atlantic. In: Brix S, Lörz A-N, Stransky B, Svavarsson J (Eds) Amphipoda from the IceAGE-project (Icelandic marine Animals: Genetics and Ecology). ZooKeys 731: 75–101. https://doi.org/10.3897/zookeys.731.19814
Figure S2. Bayesian consensus tree from COI sequences. Numbers on branches are posterior probabilities. See text for further information. :
Figure 1 in The genetic legacy of the Quaternary ice ages
Figure 1 The maximum extent of ice and permafrost at the end of the last ice age 20,000 yr BP. The lowered sea level, large deserts and main blocks of tropical forest are indicated. Modified with permission from ref. 2.
Figure 2 in The genetic legacy of the Quaternary ice ages
Figure 2 Three paradigm postglacial colonizations from southern Europe deduced from europeus/concolor, and the bear, Ursos arctos. The main refugial areas, Iberia, Italy, the DNA differences for the grasshopper, Chorthippus parallelus, the hedgehog, Erinaceus Balkans and Caucasus, contributed differently to the repopulation of northern parts.
Figure 3 in The genetic legacy of the Quaternary ice ages
Figure 3 The general position of some wellknown hybrid zones in Europe, which show major clustering in Scandinavia, central Europe and the Alps. Other clusters are apparent in the Pyrenees and the Balkans. These suture zones are caused by commonalities of iceage refugia, rate of postglacial expansion and physical barriers. There is further subdivision in the southern regions.
Genetic diversity of Avena ventricosa populations along an ecogeographical transect in Cyprus is correlated to environmental variables
<p>genetic data</p>
Figure 9 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 9. Identification key to the species of the Calumma boettgeri complex, including the three new species described here. Diagnostic characters are marked in red. For a comparison of diagnostic characters, see also Table 5.
Figure 10 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 10. DiceCT scan integrated into micro-CT scan of the skull of Calumma gehringi (ZSM 2840/2010), showing the position of the brain below the frontoparietal fenestra. A, lateral view on midsagittal section of three-dimensional model. B, dorsal view on three-dimensional model. C, lateral view on midsagittal section (diceCT only). D, correlation of elevation and presence/width of the frontoparietal fenestra in the Calumma nasutum group, based on data in Table 4. Scale bars: 2.0 mm.
Figure 8 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 8. Distribution and habitat of Calumma juliae sp. nov. A, fragment of degraded primary forest of 15 ha next to Route Nationale 2; blue dots indicate records of C. juliae sp. nov. B, small fragment of primary forest (on the right) between rice fields and eucalyptus forest (on the left, behind). C, habitat of C. juliae sp. nov. next to rice fields; view from Route Nationale 2 in August 2016. D, C. juliae sp. nov. in sleeping position photographed at night. Satellite imagery from Google Earth (17 December 2016).
Figure 7 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 7. Calumma juliae sp. nov. coloration in life during day. A, female holotype ZSM 143/2016 relaxed. B, juvenile ZSM 254/2016 relaxed. C, D, portrait of female ZSM 254/2016 with stress pattern (C) and slightly displaying (D).
Figure 4 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 4. Micro-computed tomography scans of the skulls of the three holotypes in dorsal and lateral view. A, male Calumma uetzi sp. nov. (ZSM 1688/2012). B, male C. lefona sp. nov. (ZSM 2849/2010). C, female C. juliae sp. nov. (ZSM 143/2016). D, male C. boettgeri (ZSM 440/2000). E, male C. linotum holotype. F, female C. linotum (ZSM 551/2001). G, male C. gehringi holotype (ZSM 2851/2010). H, male C. guibei (ZSM 2855/2010). Diagnostic characters are encircled in red. Abbreviations are given in the Material and Methods. Scale bars: 2.0 mm.
Figure 6 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 6. Distribution map of seven species of the Calumma boettgeri complex in Madagascar. The type locality is unknown for Calumma linotum. Contour lines indicate steps of 200 m elevation. The record from Nosy Komba is based on Hyde Roberts & Daly (2014). Coordinates for Calumma boettgeri, Maromiandra (Nagy et al., 2012) in Prötzel et al. (2015) are corrected to 13.9965°S, 48.2177°E.
Figure 5 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 5. DiceCT scans of hemipenes. A, right hemipenes of Calumma uetzi sp. nov. in asulcal (left) and sulcal (right) view. B, left hemipenes (incompletely everted) of C. lefona sp. nov. in asulcal (left) and sulcal (right) view; note that characters can be seen only in completely everted hemipenes. Scale bars: 1.0 mm.
Figure 3 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 3. Holotypes of the three new Calumma species as preserved specimens. A, C. uetzi sp. nov. (ZSM 1688/2012). B, C. lefona sp. nov. (ZSM 2849/2010). C, C. juliae sp. nov. (ZSM 143/2016). Scale bar: 20 mm.
Figure 2 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 2. Calumma uetzi sp. nov. in life. A, male (ZSM 1686/2012) in slightly stressed coloration. B, subadult female (ZSM 1685/2012) relaxed. C, male holotype (ZSM 1688/2012, left) in spectacular display, with adult female (right, UADBA- R-FGZC 3628) in stress coloration, repelling the male.
Figure 1 in Endangered beauties: micro-CT cranial osteology, molecular genetics and external morphology reveal three new species of chameleons in the Calumma boettgeri complex (Squamata: Chamaeleonidae)
Figure 1. Molecular differentiation of species in the Calumma boettgeri complex. A, maximum likelihood tree based on DNA sequences of the mitochondrial ND2 gene (515 bp). Numbers at nodes are bootstrap proportions expressed as a percentage (2000 replicates) followed by posterior probabilities from an independent Bayesian inference analysis of the same data set. GenBank accession numbers are given for each sequence included. B, haplotype network estimated from sequences of the nuclear CMOS gene (410 bp). Black dots represent additional mutational steps, and species are assigned the same colours as in the mitochondrial DNA tree.
FIGURE 14 in The Rhyacophila fasciata Group in Western Europe: Confirmation of Rhyacophila denticulata McLachlan 1879 (stat. prom.) and Rhyacophila sociata Navás 1916 (stat. res.), based on morphological and molecular genetic evidence (Trichoptera: Rhyacophilidae)
FIGURE 14. Spatial distribution of Rhyacophila denticulata McLachlan 1879 (14a), and R. sociata Navás 1916 in France (14b), and Spain (14c).
FIGURE 13 in The Rhyacophila fasciata Group in Western Europe: Confirmation of Rhyacophila denticulata McLachlan 1879 (stat. prom.) and Rhyacophila sociata Navás 1916 (stat. res.), based on morphological and molecular genetic evidence (Trichoptera: Rhyacophilidae)
FIGURE 13. Neighbor-joining tree of R. sociata (RSoc) (13a), R. denticulata (RDen) (13b) and R. fasciata (RFas) (13c), together with R. relicta (RRel) (13d) as outgroup, based on mitochondrial COI sequence data. Values of main branches are shown, data of specimens summarized in Table 1. RSoc1esp: Rhyacophila sociata specimens from Spain, RSoc1fra: Rhyacophila sociata specimens from France.
FIGURE 12. Segments VIII–XI in The Rhyacophila fasciata Group in Western Europe: Confirmation of Rhyacophila denticulata McLachlan 1879 (stat. prom.) and Rhyacophila sociata Navás 1916 (stat. res.), based on morphological and molecular genetic evidence (Trichoptera: Rhyacophilidae)
FIGURE 12. Segments VIII–XI of females of Rhyacophila sociata Navás 1916, R. denticulata McLachlan 1879 and R. fasciata Hagen 1859. 12L left lateral; 12D dorsal; 12V ventral. Scale bar: 1 mm.
FIGURE 10 in The Rhyacophila fasciata Group in Western Europe: Confirmation of Rhyacophila denticulata McLachlan 1879 (stat. prom.) and Rhyacophila sociata Navás 1916 (stat. res.), based on morphological and molecular genetic evidence (Trichoptera: Rhyacophilidae)
FIGURE 10. Comparison among the male genitalia of the three species: Rhyacophila sociata Navás 1916, R. denticulata McLachlan 1879, and R. fasciata Hagen 1859. 10A, 2nd segments of right inferior appendages, left lateral; 10BL–10BD, parameres: 10BL, left parameres, left lateral; 10BV, pairs of parameres, ventral; 10BD, left parameres, dorsal. 10CL–10CV, aedeagi (phallicatae) and their ventral lobes: 10CL aedeagi only, lateral; 10CV, aedeagi and their ventral lobes, ventral. 10DD–10DV, apicodorsal lobes of segment IX, preanal appendages, and bodies of segment X: 10DD, apicodorsal lobes and preanal appendages, dorsal; 10DV, bodies of segment X, ventral.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.