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Figure 1 in The postcranial anatomy of Whatcheeria deltae and its implications for the family Whatcheeriidae
Figure 1. Location of the Jasper Hiemstra Quarry. A, map of the contiguous United States with a rectangle highlighting the relevant area; B, simplified map of Iowa showing major cities and Delta, rectangle highlighting Keokuk County; C, partial map of Keokuk County, Iowa showing the Jasper Hiemstra Quarry in relation to Delta and other nearby towns. Keokuk County map modified from (Snyder, 2006).
Figure 5 in The postcranial anatomy of Whatcheeria deltae and its implications for the family Whatcheeriidae
Figure 5. FMNH PR 1816, articulated specimen of Whatcheeria. A, specimen photo; B, interpretive drawing with labels. Arrows point anteriorly.
Figure 4. A–C in The skeletal remains of the euryhaline sclerorhynchoid †Onchopristis (Elasmobranchii) from the 'Mid'-Cretaceous and their palaeontological implications
Figure 4. A–C, rostrum of †Onchopristis numidus. A, ventral surface of IPUW 353500. B, dorsal surface of IPUW 353500. C, NHMUK PV P 75502. Scale bar: 1cm.
Figure 3 in The postcranial anatomy of Whatcheeria deltae and its implications for the family Whatcheeriidae
Figure 3. Whatcheeria deltae, reconstruction of axial skeleton with ribs (A), without ribs (B), ribs, colour-coded by region (C).
Figure 3. A in The skeletal remains of the euryhaline sclerorhynchoid †Onchopristis (Elasmobranchii) from the 'Mid'-Cretaceous and their palaeontological implications
Figure 3. A, cranial and rostral remains of †Onchopristis numidus (IGR 2818). B, line drawing of the specimen remains (darken areas represent rock matrix). Denticles in pair arrangement marked with an arrow. Scale bar: 10 cm.
Figure 1. A in The skeletal remains of the euryhaline sclerorhynchoid †Onchopristis (Elasmobranchii) from the 'Mid'-Cretaceous and their palaeontological implications
Figure 1. A, rostral remains figured in Stromer (1925; TL 1450 mm). B, C, rostral remains figured in Stromer (1917; B, TL. 260 mm. C, TL. 520 mm).
Figure 2. A in The skeletal remains of the euryhaline sclerorhynchoid †Onchopristis (Elasmobranchii) from the 'Mid'-Cretaceous and their palaeontological implications
Figure 2. A, cranial and rostral remains of †Onchopristis numidus (IPUW 353500). B, interpretative line drawing of the specimen remains. Denticles in pair arrangement marked with an arrow. Scale bar: 5cm.
Urinary metabolic dysregulations associated to thirdhand smoke exposure in mice: Implications for human urine biomonitoring
<p>This dataset contains all raw LC-MS and GC-MS data of urine extracts from mice exposed to thirdhand smoke (THS) used in the paper<em> Urinary metabolic dysregulations associated to thirdhand smoke exposure in mice: Implications for human urine biomonitoring</em>.</p> <p><strong>Objective:</strong> The goal of this study is to characterize the THS-induced molecular alterations in urine using an LC-MS and GC-MS based untargeted metabolomic approaches. We have selected urine as a target matrix because it is a non-invasive valuable diagnostic biofluid, rich in metabolites that reflect dysregulations of all biochemical pathways, which also has been one of the most widely used biofluid to assess human exposure to tobacco smoke.</p> <p><strong>Experimental groups:</strong> Urine extracts were from two mice groups: control group (CTRL, n=5), which was never exposed to THS; and THS exposed group (THS, n=5), which was exposed to THS from weaning (three weeks of age) to 24 weeks weeks without exposure to SHS during the study.</p> <p><strong>Sample extraction:</strong> Metabolites were extracted using a mixture of methanol and Milli-Q water. In the case of GC-MS, samples were pre-treated with urease prior metabolite extraction and dried under nitrogen, lyophilized, and derivatized after extraction. Quality control samples (QCs) were prepared by pooling equal volumes of each extract and analysed every five samples to ensure data quality and reproducibility.</p> <p><strong>LC-MS analysis: </strong>LC-MS urine extracts were analysed using a 1290 UHPLC system coupled to a 6550 quadrupole time of flight (QTOF) mass spectrometer from Agilent Technologies operated in ESI+ mode. Chromatographic separation was conducted on a ACQUITY UPLC HSS T3 C18 column (1.8 µm, 150 × 2.1 mm, Waters). MS/MS was performed in targeted mode, and the instrument was set to acquire over the m/z range 50-1000, with a default iso width of 4 m/z. The collision energy was fixed at 20 V.</p> <p><strong>GC-MS analysis:</strong> GC-MS urine extracts were analysed using a 7890A gas chromatograph coupled to a 7200 QTOF mass spectrometer from Agilent Technologies. The MS was operated in the electron impact ionization mode at 70 eV, with a fixed emission current of 20 µA.</p> <p><strong>Files are named following this code:</strong></p> <ol> <li><strong>Folders: </strong>mzDATA: contains GC-MS and LC-MS raw data in mzXML format; LC-MSMS: contains LC-MS/MS data used for identification of metabolites in mzXML format.</li> <li><strong>Analytical approaches:</strong> GCMS: data from GC-MS urine extracts; LCMS: data from LC-MS urine extracts.</li> <li><strong>Samples: </strong>CTRL: control group; THS: THS exposed group.</li> </ol> <p><strong>Technical information</strong></p> <ol> <li>Sample extraction and data acquisition (single date, range, approximate date): 2016-2017</li> <li>Data analysis (single date, range, approximate date): 2017-2021</li> <li>Geographic location of data collection: <ul> <li>Mice exposure: Department of Molecular, Cell and Systems Biology, University of California, Riverside CA 92521, U.S.A.</li> <li>Sample extraction and data acquisition: Universitat Rovira i Virgili, Departament d’Enginyeria Electrònica, Elèctrica i Automàtica, Tarragona, Spain.</li> </ul> </li> <li>Information about funding sources that supported the collection of the data: This research was funded by the European Union’s Horizon 2020 research and innovation pro-gramme under the Marie Sklodowska-Curie grant agreement No. 660034; the Secretaria d’Universitats i Recerca del Departament d’Empresa i Coneixement de la Generalitat de Catalunya through C.M.’s predoctoral grant number 2020 FI_B2 00118; the Spanish Ministry of Science & Innovation through N.R.’s Juan de la Cierva Incorporación grant No. (IJCI- 2015-23158); N.R.’s Miguel Servet contract (CP19/00060) from Instituto de Salud Carlos III, co-financed by Fondo Europeo de Desarrollo Regional (FEDER), Unión Europea, “Una manera de hacer Europa”; and the Tobacco-Related Disease Research Program (TRDRP) of the University of California under projects 22RT- 0121 and 23DT-0103.</li> </ol>
Data from: Redox mediated carbon monoxide release from a manganese carbonyl—implications for physiological CO delivery by CORMs
<p><span>We evaluated the dynamics of hydrogen peroxide reactions with metal carbonyls. specifically a water-soluble manganese carbonyl. These files are the raw data for the quantitative mechanistic investigation of the H<sub>2</sub>O<sub>2</sub> oxidation of the water-soluble model complex <i>fac</i>-[Mn(CO)<sub>3</sub>(Br)(bpCO<sub>2</sub>)]<sup>2–</sup>, (<b>A</b>, bpCO<sub>2</sub><sup>2–</sup> = 2,2'-bipyridine-4,4'-dicarboxylate dianion). The method of intial rates was utilized in the experimental studies thus raw spectral data for the figures and results presented in RSOS-211022 were included. These data demonstrated pH-dependent kinetics. All the raw absorbance data used to determine the initial reaction rates and observed rate constant from pH 6.1-7.4, 8-32 mM [H<sub>2</sub>O<sub>2</sub>]. and 19.5- 42<sup>o</sup>C are present. For soluble homogenous experiments, UV-Vis, Fluorescence assay, and FT-IR spectral data for conditions included in the manuscript. For insoluble products of the experiments, X-ray diffraction and ICP-AES raw data are included.</span></p> <p>There are several untested hypotheses about the mechanisms of the reaction of manganese carbonyl with reactive oxygen species. We found that intracellular pH greatly influences the reaction rate and may be a control for redox-mediated CO release from mangense CORMs. Since the lysosome is more acidic and mitochondrial matrix is more basic than the cytosol it is likely different local rates of CO release would be observed. Furthermore, in considering the localization and diffusion of H<sub>2</sub>O<sub>2</sub> in biological systems, it is likely that a relatively slow reaction with manganese carbonyls (compared to catalase) can exhibit physiological effects. The cytotoxic effects of Mn(I) carbonyls have been associated with the generation of hydroxyl radicals, however we founs no appreciable quantities of hydroxyl radicals compared to known catalysts. Thus we conclude that these cytotoxic effects are more likely due to released CO interacting with heme-proteins vital to cellular respiration. Our mechanistic and kinetic findings provide literature precedence for researchers examining physiological effects of Mn(I) carbonyls.</p>
Supplementary material 9 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure S5. Phylogenetic relationships of Gobioninae based on complete mitochondrial genomes using Bayesian analyses
Supplementary material 7 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Figure S3. Putative secondary structures of the 22 tRNA genes identified in the mitochondrial genome of M. elongatus
Raw data to "Sclerochronological evidence of pronounced seasonality from the late Pliocene of the southern North Sea Basin, and its implications"
<p>Raw isotope and increment data, with corresponding shell heights</p>
The policy implications of an uncertain carbon dioxide removal potential: supporting data
<p>Supporting data for manuscript 'The policy implications of an uncertain carbon dioxide removal potential ', published in Joule. The full manuscript is accessible at https://doi.org/10.1016/j.joule.2021.09.004</p>
FIGURE 3 in Osteological description of Pseudopaludicola canga with implications for the taxonomic position of this taxon
FIGURE 3. Strict consensus of 16 maximum parsimony trees obtained using the same characters and analytical parameters as in Lobo (1995). The black arrow indicates the taxonomic position of P. c a n g a.
FIGURE 1 in Osteological description of Pseudopaludicola canga with implications for the taxonomic position of this taxon
FIGURE 1. Pseudopaludicola canga osteology. Skull: A) dorsal view; B) ventral view. C) Maxilar process of the quadratojugal; D) Descendant process of the squamosal. E) palmar view of hand; F) vertebral column; G) plantar view of foot. Scale bar 500 µm (C–D) and 1 mm (A–B; E–G).
FIGURE 2. The IV in Osteological description of Pseudopaludicola canga with implications for the taxonomic position of this taxon
FIGURE 2. The IV digit toe tip in Pseudopaludicola species. A) P. canga (MPEG 34369) 14700); B) P. falcipes (LGE 3125); C) P. pusilla (ICN 14700); D) P. llanera (ICN 14025); E) P. boliviana (LGE 3027); F) P. ceratophyes (INPA 3540). Scale bar 1 mm.
FIGURE 2 in Lectotype designation for Murex nebula Montagu 1803 (Mangeliidae) and its implications for Bela Leach in Gray 1847
FIGURE 2. Optical microscope photos of teleoconch features; scale bars 1 mm. A–C) Bela fuscata (Deshayes, 1835) sensu Nordsieck (1977), from Punta Ala (Grosseto, Italy). D) Bela brachystoma (Philippi, 1844) from Djerba (Tunisia), and (F–G) from Porto Azzurro (Leghorn, Italy). G–I) †Bela hispidula (Bellardi, 1847) from Formello Quarry (Rome, Italy). J–L) Mangelia striolata Risso, 1826 from Procida Island (Naples, Italy). SEM photos of protoconch features; scale bar 0.1 mm. M) B. fuscata from Punta Pioppeto (Naples, Italy). N) B. brachystoma from Elba Island (Grosseto, Italy). O) †B. hispidula from Ca' Lametta (Bologna, Italy). P) M. striolata from Djerba (Tunisia). Symbol: † fossil.
FIGURE 1 in Lectotype designation for Murex nebula Montagu 1803 (Mangeliidae) and its implications for Bela Leach in Gray 1847
FIGURE 1. Optical microscope and scanning electron microscope (SEM) photos of Bela nebula (Montagu 1803); scale bars 1 mm and 0.1 mm, respectively. A–C lectotype, # Exem:Moll4253/5; D–F topotype, # NMW1953.183.02275/1; G–K topotype # NMW1953.183.02276/1; L topotype # NMW1953.183.02281/1. Topotype specimens from Torbay, Devon (UK). # shell number in Table 1.
FIGURE 5 in Using an Asteraceae checklist to understand collection history, species density and conservation implications: a case study in the state of Alagoas, Northeastern Brazil
FIGURE 5. Continental Protected Areas in the state of Alagoas. 1. Natural Monument of the São Francisco. 2. Wildlife Refuge of Morros do Craunã and Padre. 3. Ecological Station Curral do Meio. 4. Ecological Park Pedra do Sino. 5. Biological Reserve Pedra Talhada. 6. Environmental Protection Area Marituba do Peixe. 7. Environmental Protection Area of Piaçabuçu. 8. Extractive Reserve Jequiá. 9. Ecological Mangrove Reserve of Lagoa do Roteiro. 10. Ecological Reserve Saco da Pedra. 11. Environmental Protection Area of Santa Rita. 12. Environmental Protection Area of Catolé e Fernão Velho. 13. Municipal Park of Maceió. 14. Environmental Protection Area Patangy. 15. Environmental Protection Area of Murici. 16. Ecological Station of Murici. *RPPN
FIGURE 3 in Using an Asteraceae checklist to understand collection history, species density and conservation implications: a case study in the state of Alagoas, Northeastern Brazil
FIGURE 3. Results of the species richness (a) and collection density (b) analyses, and correlation between these two variables (c).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.