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Supplementary material 1 from: Huber BA, Eberle J, Dimitrov D (2018) The phylogeny of pholcid spiders: a critical evaluation of relationships suggested by molecular data (Araneae, Pholcidae). ZooKeys 789: 51-101. https://doi.org/10.3897/zookeys.789.22781

Figure S1. Maximum-likelihood tree of the complete set of taxa inferred with IQ-TREE : Explanation note: This tree is identical to the one shown in Figs 2–12 except that it includes all outgroups and all support values are shown (in the sequence SBS / RBS / SH-like aLRT).

Supplementary material 2 from: Lau Y, Stokvis F, van Ofwegen L, Reimer J (2018) Stolonifera from shallow waters in the north-western Pacific: a description of a new genus and two new species within the Arulidae (Anthozoa, Octocorallia). ZooKeys 790: 1-19. https://doi.org/10.3897/zookeys.790.28875

Supplemental tables 1, 2 : Explanation note: Table 1. Numbers of base differences per site from averaging over all sequence pairs between groups (d) shown for gene regions COI and mtMutS (uncorrected p, expressed as percentage). Table 2. Estimates of average evolutionary divergence over sequence pairs within groups for gene regions COI and mtMutS.

Supplementary material 1 from: Lau Y, Stokvis F, van Ofwegen L, Reimer J (2018) Stolonifera from shallow waters in the north-western Pacific: a description of a new genus and two new species within the Arulidae (Anthozoa, Octocorallia). ZooKeys 790: 1-19. https://doi.org/10.3897/zookeys.790.28875

Supplemental figures 1–3 : Explanation note: Figure 1: Maximum likelihood phylogenetic reconstruction of gene region 28S rDNA of arulid specimen from Okinawa (OKA), Palau (ROR), Dongsha Atoll (DSX), reference taxa Arulapetunia and outgroup sister taxa (Paratelesto sp. and Rhodelinda sp.). Figure 2: Maximum likelihood phylogenetic reconstruction of gene region COI of arulid specimen from Okinawa (OKA), Palau (ROR), Dongsha Atoll (DSX), reference taxa Arulapetunia and outgroup sister taxa (Paratelesto sp. and Rhodelinda sp.). Figure 3: Maximum likelihood phylogenetic reconstruction of gene region mtMutS of arulid specimen from Okinawa (OKA), Palau (ROR), Dongsha Atoll (DSX), reference taxa Arulapetunia and outgroup sister taxa (Paratelesto sp.).

Supplementary material 2 from: Dickey JWE, Cuthbert RN, Rea M, Laverty C, Crane K, South J, Briski E, Chang X, Coughlan NE, MacIsaac HJ, Ricciardi A, Riddell GE, Xu M, Dick JTA (2018) Assessing the relative potential ecological impacts and invasion risks of emerging and future invasive alien species. NeoBiota 40: 1-24. https://doi.org/10.3897/neobiota.40.28519

Table S2. Summary of the GB online survey outlining which of the four species of turtle was being sold :

Supplementary material 1 from: Prötzel D, Lambert SM, Andrianasolo GT, Hutter CR, Cobb KA, Scherz MD, Glaw F (2018) The smallest 'true chameleon' from Madagascar: a new, distinctly colored species of the Calumma boettgeri complex (Squamata, Chamaeleonidae). Zoosystematics and Evolution 94(2): 409-423. https://doi.org/10.3897/zse.94.27305

Genetic distances of ND2 : Explanation note: Uncorrected genetic distances for all pairwise comparisons of ND2.

Supplementary material 4 from: Prötzel D, Lambert SM, Andrianasolo GT, Hutter CR, Cobb KA, Scherz MD, Glaw F (2018) The smallest 'true chameleon' from Madagascar: a new, distinctly colored species of the Calumma boettgeri complex (Squamata, Chamaeleonidae). Zoosystematics and Evolution 94(2): 409-423. https://doi.org/10.3897/zse.94.27305

Movie of 3D model of the skull : Explanation note: Movie of micro-CT scan of the skull of the female Calummaroaloko (KU 343168).

Supplementary material 3 from: Prötzel D, Lambert SM, Andrianasolo GT, Hutter CR, Cobb KA, Scherz MD, Glaw F (2018) The smallest 'true chameleon' from Madagascar: a new, distinctly colored species of the Calumma boettgeri complex (Squamata, Chamaeleonidae). Zoosystematics and Evolution 94(2): 409-423. https://doi.org/10.3897/zse.94.27305

Movie of 3D model of the skull : Explanation note: Movie of micro-CT scan of the skull of the male holotype of Calummaroaloko (KU 343178).

Supplementary material 2 from: Prötzel D, Lambert SM, Andrianasolo GT, Hutter CR, Cobb KA, Scherz MD, Glaw F (2018) The smallest 'true chameleon' from Madagascar: a new, distinctly colored species of the Calumma boettgeri complex (Squamata, Chamaeleonidae). Zoosystematics and Evolution 94(2): 409-423. https://doi.org/10.3897/zse.94.27305

Genetic distances of COI : Explanation note: Uncorrected genetic distances for all pairwise comparisons of COI.

Supplementary material 2 from: Santodomingo N, Becking LE (2018) Unravelling the moons: review of the genera Paratetilla and Cinachyrella in the Indo-Pacific (Demospongiae, Tetractinellida, Tetillidae). ZooKeys 791: 1-46. https://doi.org/10.3897/zookeys.791.27546

Figure S1. Type material of Tethyamerguiensis : Explanation note: NHMUK 1894.11.16.17, Mergui Archipelago, Myanmar. A two slide preparations of the type specimen B skeleton, showing anatriaenes and oxeas C oxea, anatriaene, and protriaene D thin microxeas and sigmaspires E sigmaspires. Scale bars: 100 μm (B, D); 50 μm (C); 20 μm (E).

Supplementary material 1 from: Miu IV, Chisamera GB, Popescu VD, Iosif R, Nita A, Manolache S, Gavril VD, Cobzaru I, Rozylowicz L (2018) Conservation priorities for terrestrial mammals in Dobrogea Region, Romania. ZooKeys 792: 133-158. https://doi.org/10.3897/zookeys.792.25314

Publications used to compile distribution of terrestrial mammal species from Dobrogea Region, Romania (field reports and data from museum collections) :

Supplementary material 2 from: Miu IV, Chisamera GB, Popescu VD, Iosif R, Nita A, Manolache S, Gavril VD, Cobzaru I, Rozylowicz L (2018) Conservation priorities for terrestrial mammals in Dobrogea Region, Romania. ZooKeys 792: 133-158. https://doi.org/10.3897/zookeys.792.25314

Occurrences maps for 59 mammal species : Explanation note: The mammal species old (before 1990) and new (after 1990) occurrence records at a 5 × 5 km grid resolution within Dobrogea, Romania.

Supplementary material 1 from: Sammet K, Ivask M, Kurina O (2018) A synopsis of Estonian myriapod fauna (Myriapoda: Chilopoda, Diplopoda, Symphyla and Pauropoda). ZooKeys 793: 63-96. https://doi.org/10.3897/zookeys.793.28050

Full collecting details for one finding from each locality. The locality numbers correspond to those in Table 1 and Figure 1. :

Supplementary material 1 from: Van Tuyl S, Whitmire A (2018) Investigation of Non-Academic Data Management Practices to Inform Academic Research Data Management. Research Ideas and Outcomes 4: e30829. https://doi.org/10.3897/rio.4.e30829

Interview protocol used for the project, "Investigation of Non-Academic Data Management Practices to Inform Academic Research Data Management"

Supplementary material 2 from: Yanai Z, Gattolliat J-L, Dorchin N (2018) Taxonomy of Baetis Leach in Israel (Ephemeroptera, Baetidae). ZooKeys 794: 45-84. https://doi.org/10.3897/zookeys.794.28214

Collecting details and GenBank accession numbers for the specimens used in the molecular analysis. Codes correspond to those in Figure 3. :

Supplementary material 1 from: Tan JP-C, Tam SM, Kiew R (2018) Begonia yenyeniae (Begoniaceae), a new species from Endau Rompin National Park, Johor, Malaysia. PhytoKeys 110: 23-37. https://doi.org/10.3897/phytokeys.110.25846

List of taxa with accession and location information for the 48 samples of Begonia included in the Bayesian analysis using ndhF-rpl32 intergenic spacer sequences :

Supplementary material 4 from: Soreng RJ, Gillespie LJ (2018) Poa secunda J. Presl (Poaceae): a modern summary of infraspecific taxonomy, chromosome numbers, related species and infrageneric placement based on DNA. PhytoKeys 110: 101-121. https://doi.org/10.3897/phytokeys.110.27750

Table 3. Data partition characteristics, summary statistics and models of the phylogenetic analyses : Explanation note: For each data partition (ITS, ETS, trnT-trnL-trnF, rpoB-trnC, MatK) and concatenated dataset (plastid and nuclear), the following are given: number of sequences, number of characters, number of parsimony informative (PI) characters, % parsimony informative characters, maximum parsimony tree length (L), number of most parsimonious trees, consistency index excluding uninformative characters (CI) and retention index (RI). Also given are the models used in the Bayesian analyses as determined using the Akaike information criterion (AIC) in jModeltest.

Supplementary material 3 from: Soreng RJ, Gillespie LJ (2018) Poa secunda J. Presl (Poaceae): a modern summary of infraspecific taxonomy, chromosome numbers, related species and infrageneric placement based on DNA. PhytoKeys 110: 101-121. https://doi.org/10.3897/phytokeys.110.27750

Table 2. Poa and outgroup samples used in the phylogenetic analyses : Explanation note: Poa and outgroup samples used in the phylogenetic analyses with subgeneric classification (subtribe for outgroups), voucher information and GenBank Accession numbers for each of the five DNA regions (ITS, ETS, trnT-trnL-trnF, matK, rpoB-trnC).

Supplementary material 1 from: Soreng RJ, Gillespie LJ (2018) Poa secunda J. Presl (Poaceae): a modern summary of infraspecific taxonomy, chromosome numbers, related species and infrageneric placement based on DNA. PhytoKeys 110: 101-121. https://doi.org/10.3897/phytokeys.110.27750

Table 1. Chromosome numbers in taxa of Poasubg.Secundae : Explanation note: Chromosome numbers in taxa of Poasubg.Secundae, with RJS' subspecies determinations and original determinations as published or found on herbarium sheets, literature reference, number of counts, voucher collection, country and state or province abbreviation and herbarium where deposited, if known. CI = Carnegie Institution. These numbers show the hexaploid nature of the species complex and the wide and differing ranges of chromosome numbers in each of the P.secunda subspecies.

Supplementary material 2 from: Soreng RJ, Gillespie LJ (2018) Poa secunda J. Presl (Poaceae): a modern summary of infraspecific taxonomy, chromosome numbers, related species and infrageneric placement based on DNA. PhytoKeys 110: 101-121. https://doi.org/10.3897/phytokeys.110.27750

David D. Keck's annotations of taxa here included in Poasecunda : Explanation note: The following taxa recognised by Keck, but included by us in P.secunda s.l., are given in the specimen annotation lists: P.ampla, P.canbyi, P.gracillima, P.incurva, P.juncifolia, P.nevadensis, P.sandbergii and P.scabrella. His lists focused on western Continental United States species but included some mainly non-arctic Alaskan, Canadian and Mexican (Baja California) records and some records of eastern United States species. Copies of the original typed lists are stored in the reprint files in the Grass Lab in the Department of Botany, Smithsonian Institution. Optical character recognition (OCR) was performed on the present selection to allow the lists to be searchable to a large degree. Keck's annotations are considered to be sound and to represent hundreds of historical collections widely distributed in herbaria as vouchers for P.secunda infraspecies. We treat P.ampla, P.juncifolia and P.nevadensis as varieties of P.secundasubsp.juncifolia (vars. ampla, juncifolia and nevadensis, respectively) in our revised classification. The remaining taxa are treated as varieties of P.secundasubsp.secunda , as follows: var. gracillima (P.gracillima), var. scabrella (P.scabrella) and var. secunda (P.canbyi, P.incurva, and P.sandbergii).

Supplementary material 1 from: Early R, González-Moreno P, Murphy ST, Day R (2018) Forecasting the global extent of invasion of the cereal pest Spodoptera frugiperda, the fall armyworm. NeoBiota 40: 25-50. https://doi.org/10.3897/neobiota.40.28165

Supplementary material : Explanation note: Table S1. Summary of evidence for fall armyworm developmental and population responses to the environment extracted from literature sources. Figure S1. Effect of different sub-sampling proportions and pseudo-absence selection diameters on model predictions (maps). Figure S2. Effect of different sub-sampling proportions and pseudo-absence selection diameters on Balanced Accuracy. Figure S3. Histograms of each environmental variable in 10 arc-minute grid-cells from which the fall armyworm is recorded. Figure S4. Multivariate Environmental Similarity Surface analysis. Figure S5. Empirically measured environmental effects on fall armyworm life cycle. Figure S6. Trade and passenger air transportation within Africa.