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5,031
datasets available to search
ShareScore release 0.9.0
Dataset results
5,031 results for “MiRNA”
Discovery and profiling conserved and novel miRNAs involved in ovule development of Ginkgo biloba by deep sequencing
GEO Series GSE74024. Ginkgo biloba. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
miRNA expression of Tubulocystic Renal Cell Carcinoma (TC-RCC) cases
GEO Series GSE101563. Homo sapiens; synthetic construct. 11 samples. Type: Non-coding RNA profiling by array.
METTL3 Facilitates Hypertrophic Scar Fibrosis by Promoting pri-miRNA-31 Maturation and ZBTB20 Silencing in m6A-dependent Manner [MeRIP-Seq]
GEO Series GSE246978. Homo sapiens. 4 samples. Type: Other.
Whole miRNA transcriptome profiling of Trichostatin A and Grape Seed Extract treated SK-MEL-3 human melanoma cells.
GEO Series GSE104266. Homo sapiens; synthetic construct. 8 samples. Type: Non-coding RNA profiling by array.
Identification and characterization analysis of the Oriental River Prawn (Macrobrachium nipponense) microRNA response to hypoxia using a deep sequencing approach [miRNA-Seq]
GEO Series GSE72417. Macrobrachium nipponense. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Transcriptome sequencing of lncRNAs, circRNAs, miRNAs, mRNAs and interaction network constructing in acute exacerbation of idiopathic pulmonary fibrosis
GEO Series GSE221937. Homo sapiens. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNA-seq and miRNA-seq of testicular peritubular myoid cells, other testicular cells, and other tissue smooth muscle-like cells
GEO Series GSE125304. Mus musculus. 42 samples. Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
miRNA expression in kidney Thick Ascending Limb in Hypersodic diet treated rats (H samples) vs normal diet rats (N samples)
GEO Series GSE71324. Rattus norvegicus. 6 samples. Type: Non-coding RNA profiling by array.
miRNA sequencing of islet-drived exosomes in HFD mice
GEO Series GSE152352. Mus musculus. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Identification of known and novel miRNAs in the salt tolerant rice Oryza sativa cv. Pokkali in root and shoots of control and NaCl exposed seedlings
GEO Series GSE133866. Oryza sativa. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Small RNA Sequencing facilitates quantitative analysis of miRNA expression in feces from mice during DSS-induced colitis and the recovery phase
GEO Series GSE165648. Mus musculus. 11 samples. Type: Non-coding RNA profiling by high throughput sequencing.
miRNA profiling in HEV71-infected SH-SY5Y cells
GEO Series GSE45816. synthetic construct; Homo sapiens. 4 samples. Type: Non-coding RNA profiling by array.
Expression data of exosomal miRNAs extracted from plasma [Affymetrix miRNA 4.0]
GEO Series GSE116542. synthetic construct; Homo sapiens. 19 samples. Type: Non-coding RNA profiling by array.
Mechanical stretch differentially regulates the expression of specific miRNA in the extracellular vesicles released from lung epithelial cells
GEO Series GSE131645. Mus musculus; synthetic construct. 16 samples. Type: Non-coding RNA profiling by array.
miRNA sequencing of HUVECs in hypoxia conditions, with separation of the nuclear and cytosolic compartments.
Open the record for dataset details and reuse information.
Differential expression analysis of isomiRs in 28 miRNA-seq datasets
Open the record for dataset details and reuse information.
Sequences and secondary structures of mutated pre-miRNAs from CRISPR/Cas9-edited MIR160a, MIR160b and MIR390a genes of potato
<p><strong>Genotypisation of transfected protoplasts</strong> (folder<strong> “Transfected protoplasts”</strong>)</p> <p>Genomic DNA isolated from transfected and non-transfected protoplast of cv. Desiree was used as a template to amplify approximately 800 bp-long region surrounding coding sequence for miR160a-5p, miR160b-5p and miR390a-5p, encoded by <em>MIR160a</em>, <em>MIR160b</em> and <em>MIR390a</em> genes, respectively. To determine types of mutations and polymorphism, PCR products were cloned into pJET, transformed into <em>E. coli</em>, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions.</p> <p><strong>Genotypisation of transgenic lines</strong> (folder<strong> “Transgenic potato”</strong>)</p> <p>Approximately 800 bp-long region surrounding coding sequence for each miRNA was amplified from genomic DNA isolated from CRISPR-edited <em>MIR160a</em> (cr-<em>MIR160a</em>), <em>MIR160b </em>(cr-<em>MIR160b</em>) and <em>MIR390a</em> (cr-<em>MIR390a</em>) transgenic and non-transgenic plants (NT; cv. Rywal and cv. Desiree). For the screening of transgenic lines with desired mutations, PCR products were Sanger sequenced (subfolder <strong>“PCR amplicons miRNA”</strong>). To determine types of mutations and polymorphism, PCR products were for the selected transgenic lines and NT plants cloned into pJET, transformed into E. coli, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions (subfolder <strong>“pJET_miRNA”</strong>).</p> <p><strong>Secondary structures of pre-miRNA precursors</strong> (folder <strong>“Secondary structures”</strong>)</p> <p>Precursor sequences of wild-type potato <em>MIR160a</em> and <em>MIR160b</em> were obtained from miRBase (https://www.mirbase.org/; Accession No. MI0025955, MI0025956) and of wild-type potato <em>MIR390a</em> from the study of Križnik <em>et al.</em>, 2017 (Križnik <em>et al.</em>, 2017) (subfolder <strong>“</strong><strong>WT pre-miRNAs</strong><strong>“</strong>). The mutated pre-miRNAs of cr-<em>MIR160a</em>, cr-<em>MIR160b</em> and cr-<em>MIR390a</em> transgenic lines were extracted from Sanger sequencing results (subfolder <strong>“pJET_miRNA”</strong>). The secondary structures were drawn and miRNA/miRNA* duplex regions were highlighted (orange – 5p miRNA coding region, blue – 3p miRNA coding region) using RNA Folding/Annotation tool of The Small RNA Workbench v4.5 (Stocks <em>et al.</em>, 2018) (subfolders <strong>“Desiree” </strong>and<strong> “Rywal”</strong>).</p>
Bioinformatic Analysis of mRNA and miRNA Expression Patterns In p53 Knock-out C666-1 cells
GEO Series GSE138259. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Serum exosome miRNA expression profile in patients with cholangiocarcinoma(CCA) and common bile duct stones(CBDS)
GEO Series GSE215448. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genome-wide perturbations by miRNA map onto functional cancer pathways identifying regulators of chromatin modifiers
GEO Series GSE64020. Homo sapiens. 11 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.