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opennotspecifiedMar 2013View details →

Fig. 3 in Genetic variation within the cosmopolitan aquatic fungus Lignincola laevis (Microascales, Ascomycota)

Fig. 3 Alignment of internal transcribed spacer 1 (ITS1) (top) and ITS2 (bottom) of Lignincola laevis isolates

opennotspecifiedJul 2012View details →

Fig. 4 in Conservation genetics and phylogeography of the poorly known Middle Eastern terrapin Mauremys caspica (Testudines: Geoemydidae)

Fig. 4 Distribution of mitochondrial haplotypes of Mauremys caspica. Green symbols correspond to the western haplotype cluster; beige symbols, to the eastern cluster. The overlapping symbols (arrow) represent a syntopic occurrence of haplotypes of the two clusters. Numbers indicate individual haplotypes; numbers separated by slashes, syntopic occurrences of respective haplotypes. New haplotypes identified in the present study are numbers 11–14. Inset Parsimony network showing mutational relationships of haplotypes. Symbol size corresponds to haplotype frequency. Small black circles are missing node haplotypes. Unless otherwise indicated, lines connecting haplotypes represent one mutational step

opennotspecifiedJul 2012View details →

Fig. 3 in Conservation genetics and phylogeography of the poorly known Middle Eastern terrapin Mauremys caspica (Testudines: Geoemydidae)

Fig. 3 Posterior distributions of population demographic parameters for Mauremys caspica using MSVAR. Each line corresponds to the sum of posterior distributions of the four runs obtained for each cluster; colour code as in Fig. 2. Top Posterior distribution of the estimated time (in years ago) for each bottleneck. Bottom Posterior distribution of ancestral (N1) and present (N0) effective population sizes

opennotspecifiedMar 2012View details →

Fig. 3 in A dragonfly in the desert: genetic pathways of the widespread Trithemis arteriosa (Odonata: Libellulidae) suggest male-biased dispersal

Fig. 3 Bayesian analysis of the nuclear genetic structure of T. arteriosa populations based on eight microsatellite loci. Each vertical bar represents an individual and is partitioned into one to three coloured segments indicating the individual membership in the three genetic

opennotspecifiedAug 2011View details →

Fig. 1 in Multilocus population analysis of Gavia immer (Aves: Gaviidae) mtDNA reveals low genetic diversity and lack of differentiation across the species breeding range

Fig. 1 Haplotype network constructed using the median joining method. Haplotype numbers are indicated. Circle patterns represent coastal sampling locations: GZ Galicia, Spain, MX Mexico, GE Germany, NJ New Jersey, US, MI Michigan, US, CA Canada, FL Florida, US. Circle surfaces are roughly proportional to the number of individuals with each haplotype (Table 3)

opennotspecifiedSep 2010View details →

Fig. 4 in Genetic and morphological divergence among Gravel Bank Grasshoppers, Chorthippus pullus (Acrididae), from contrasting environments

Fig. 4 Discriminant function plot (group centroids ± SD for the first two discriminant func- tions) for the analysis presented in Table 7. Dark grey centroids: lowland heath populations; light grey centroids: alpine gravel bank populations

opennotspecifiedApr 2021View details →

Fig. 1 Pattern representing a in Genetic analysis of dicyemid infrapopulations suggests sexual reproduction and host colonization by multiple individuals is common

Fig. 1 Pattern representing a distribution of microsatellite alleles in individual dicyemids. Dicyemids in each host individual did not share identical patterns of microsatellite alleles. Each row represents a single dicyemid individual. Microsatellite alleles are colour coded according to

opennotspecifiedApr 2021View details →

Fig. 3 in Genetic analysis of dicyemid infrapopulations suggests sexual reproduction and host colonization by multiple individuals is common

Fig. 3 Percentage of variance present in the samples (based on the four-level AMOVA computed in Arlequin using Rst metrics). Groups set as two localities from Tyrrhenian (Italy, Naples) and Adriatic seas (Pula, Croatia). Hierarchical levels showing significant variation (p <0.05) are marked by an asterisk

opencc-by-4.0Aug 2024View details →

Widespread naturally variable human exons aid genetic interpretation (Preprint)

Supplemental files for Widespread naturally variable human exons aid genetic interpretation (<a href="https://www.biorxiv.org/content/10.1101/2024.09.09.612029v1">Preprint link</a>)   For newest version, click here: <a href="https://zenodo.org/records/15790343">https://zenodo.org/records/15790343</a>

FIG. 5 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods

FIG. 5. Genetic distances between salamanders that hybridize with heteromorphic sex chromosomes (median ¼ 0.109) and salamanders that hybridize without sex chromosomes (median ¼ 0.152). There is no significant difference (P ¼ 0.5293) between salamanders with sex chromosomes and salamanders without sex chromosomes.

FIG. 2 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods

FIG. 2. (A) Histogram of cytochrome b (MT-CYB) genetic distance estimates (HKY85 þ C) between salamanders that hybridize. Graph bin width is 0.0125. (B) Ratio of mitochondrial MT-CYB genetic distance to nuclear recombination activating 1 (RAG1) genetic distance between parental species of salamanders that hybridize on a log scale. The ratio of genetic distance ranged from 0.6 to 162 with the majority of species pairs having a higher mitochondrial genetic distance (median ¼ 21.1).

FIG. 3. Cytochrome b in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods

FIG. 3. Cytochrome b (MT-CYB) genetic distances between parental species that hybridize in different tetrapod groups. Kruskal-Wallis H test showed no significant differences across the groups (P ¼ 0.661). Salamanders are not hybridizing across greater genetic distances.

FIG. 1 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods

FIG. 1. Salamander hybrids are found in most families (Pyron and Wiens, 2011). About 12.1% of salamanders are known to hybridize with over half belonging to Plethodontidae. There was no significant correlation between the number of papers per species and the proportion of salamanders found to hybridize (Kendall's rank correlation P ¼ 0.236).

FIG. 4 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods

FIG. 4. Genetic distance ratio of mitochondrial cytochrome b (MTCYB) to nuclear recombination activating 1 (RAG1) for pairs of species that hybridize in major tetrapod clade on a log scale. Kruskal-Wallis H test showed no strong significant differences across the four groups (P ¼ 0.108).

FIG. 4 in Nest-Site Fidelity and Sex-Biased Dispersal Affect Spatial Genetic Structure of Eastern Box Turtles (Terrapene carolina carolina) at Their Northern Range Edge

FIG. 4. Analysis of global structure along the river corridor from the first principal component of the sPCA represented by (A) interpolation of lagged principal scores showing genetic clines and (B) colors indicating individual scores. Coordinates have been deliberately omitted to deter poachers.

FIG. 3 in Nest-Site Fidelity and Sex-Biased Dispersal Affect Spatial Genetic Structure of Eastern Box Turtles (Terrapene carolina carolina) at Their Northern Range Edge

FIG. 3. Bubble plot showing the results of two-dimensional local spatial autocorrelation analysis for all Eastern Box Turtles (n ¼ 165) sampled in northwestern Michigan. Circles represent individuals and the size of the circle is proportional to the P-values from permutation testing, with large circles representing individuals that are significantly more related to their five nearest neighbors than expected (P, 0.05) based on a random distribution of genotypes. Figure shows the distribution of five genetic ''hotspots'' in relation to known nesting sites (NS) across the study area. Some distantly sampled individuals are omitted for figure clarity.

FIG. 2 in Nest-Site Fidelity and Sex-Biased Dispersal Affect Spatial Genetic Structure of Eastern Box Turtles (Terrapene carolina carolina) at Their Northern Range Edge

FIG. 2. Spatial genetic autocorrelograms of genetic correlation coefficients (r) as a function of distance for Eastern Box Turtles in northwestern Michigan. Plots represent (A) all individuals (n ¼ 165), (B) females only (n ¼ 104), and (C) males only (n ¼ 51). Dashed lines are permuted 95% confidence intervals across all data, and error bars are bootstrapped 95% confidence intervals within each distance class. Tables below graphs represent data for each distance class including the number of pairwise comparisons (n), the correlation coefficients (r), and the P-values (p) associated with bootstrap tests of significance for positive spatial genetic autocorrelation.

FIG. 1 in Nest-Site Fidelity and Sex-Biased Dispersal Affect Spatial Genetic Structure of Eastern Box Turtles (Terrapene carolina carolina) at Their Northern Range Edge

FIG. 1. Scatterplot showing the matrix of pairwise genetic distances and matrix of pairwise geographic distances for box turtles sampled along the river corridor. Warmer colors within the kernel density indicate higher densities of points. The line (slope ¼ 1.074727e–05; R2 ¼ 0.002992) shows the correlation trend.

opennotspecifiedOct 2023View details →

Figure 3 in Genetic data to describe the hybrid zone between Bufo bufo (Linnaeus, 1758) and Bufo verrucosissimus (Pallas, 1814) in northeastern Türkiye

Figure 3. Cline analysis of nuclear (based on STRUCTURE Q-scores) and mitochondrial data across the Bufo bufo/Bufo verrucosissimus (Common Toad/ Caucasian Toad) hybrid zone along a west-east transect. Each point represents one population and grey shades represent 95% confidence intervals of fitted clines.