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Figure 13 from: Zheng Y-N, Cai X-R, Ma L-B (2022) Taxonomy of Landrevus species group of Velarifictorus Randell, 1964 (Orthoptera, Gryllidae, Gryllinae) with one new species and morphological diversity of Velarifictorus flavifrons Chopard, 1966. ZooKeys 1084: 101-117. https://doi.org/10.3897/zookeys.1084.77096
Figure 13 Right tegmina of VelarifictorusA, DV. zhengi sp. nov. B, EV. landrevusC, FV. flavifronsA–C male D–F female.
Figure 10 from: Zheng Y-N, Cai X-R, Ma L-B (2022) Taxonomy of Landrevus species group of Velarifictorus Randell, 1964 (Orthoptera, Gryllidae, Gryllinae) with one new species and morphological diversity of Velarifictorus flavifrons Chopard, 1966. ZooKeys 1084: 101-117. https://doi.org/10.3897/zookeys.1084.77096
Figure 10 Lateral view of heads of VelarifictorusA, DV. zhengi sp. nov. B, EV. landrevusC, FV. flavifronsA–C male D–F female.
Figure 1 from: Zheng Y-N, Cai X-R, Ma L-B (2022) Taxonomy of Landrevus species group of Velarifictorus Randell, 1964 (Orthoptera, Gryllidae, Gryllinae) with one new species and morphological diversity of Velarifictorus flavifrons Chopard, 1966. ZooKeys 1084: 101-117. https://doi.org/10.3897/zookeys.1084.77096
Figure 1 Velarifictorus zhengi sp. nov. Habitus (alive) in field A male B female (photographed by Zhixin He).
Figure 12 from: Zheng Y-N, Cai X-R, Ma L-B (2022) Taxonomy of Landrevus species group of Velarifictorus Randell, 1964 (Orthoptera, Gryllidae, Gryllinae) with one new species and morphological diversity of Velarifictorus flavifrons Chopard, 1966. ZooKeys 1084: 101-117. https://doi.org/10.3897/zookeys.1084.77096
Figure 12 Genitalia of Velarifictorus flavifronsA dorsal view B, C lateral view (ectoparamerea are movable and may touch or be separated from middle epiphallic lobe in some material) D ventral view E–H caudal view E inner branch observable and apically acute F inner branch small and asymmetry (observed five samples), as evident here, the left apically rounded and the right somewhat acute G inner branch relatively weak H inner branch similarly placed as in F but different in details.
Figure 4 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 4 Thyridium pluriloculosum (A–Y KT 3803 = HHUF 30648 Z–AL culture KT 3803 = MAFF 247508) A–R sexual morph A, B appearance of stromata on substrate (B transverse sections) C ascomata in longitudinal section D ostiolar neck of ascoma E paraphyses F ascomatal wall G pseudostromatic tissue H–J asci K apex of ascus L–Q ascospores R germinating ascospore S–AF coelomycetous asexual morph (S–Y nature Z–AF culture) S appearance of conidiomata on substrate T conidiomata in longitudinal section U conidiomatal wall V conidiophores W phialide X, Y conidia Z–AB conidiomata in culture (AB multiloculate conidiomata) AC setose hypha of conidiomata AD conidiophores with groups of phialides AE, AF conidia AG–AL hyphomycetous synasexual morph AG, AH sporulation in culture AI phialide AJ, AK conidia AL chlamydospores. Scale bars: 1 mm (A, B, S, AB); 500 µm (C, Z, AA); 100 µm (D, T); 20 µm (AG, AH); 10 µm (E–J, L–R, U, V); 5 µm (K, W–Y, AC–AF, AI–AL).
Figure 3 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 3 Thyridium flavostromatum (A–S KT 3891 = HHUF 30647 T–AC culture KT 3891 = MAFF 247509) A–S sexual morph A–C appearance of stromata on substrate D, E ascomata in longitudinal section (D in 2% KOH) F ostiolar neck of ascoma G paraphyses H ascomatal wall I–K asci L apex of the ascus M stipe of the ascus N–R ascospores S germinating ascospore T–AC hyphomycetous asexual morph T sporulation in culture U phialides V slimy conidial heads W conidiophores X phialide Y adelophialide Z–AB conidia AC chlamydospores and conidia. Scale bars: 1 mm (A); 500 µm (B, C); 100 µm (D, E); 50 µm (F); 10 µm (G–K, M, S, U, V); 5 µm (L, N–R, W–AC); 250 µm (T).
Figure 2 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 2 Maximum-likelihood tree of Thyridium species based on each ITS (A), act (B), tub2 (C) and combined sequences (ITS-act-tub2; D). ML bootstrap proportion (BP) greater than 70% and Bayesian posterior probabilities (PP) above 0.95 are presented at the nodes as MLBP/Bayesian PP. A hyphen ('-') indicates values lower than 70% BP or 0.95 PP and a node not present in the Bayesian analysis is shown with 'x'. Ex-holotype and epitype strains are shown in bold and the newly obtained sequences are shown in red. Strains previously as Phialemoniopsis species are marked with a blue circle. The scale bars represent nucleotide substitutions per site.
Figure 1 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 1 Maximum-likelihood tree of Sordariomycetes based on combined LSU, rpb2 and tef1 sequence. ML bootstrap proportion (BP) greater than 70% and Bayesian posterior probabilities (PP) above 0.95 are presented at the nodes as MLBP/Bayesian PP and a node not present in the Bayesian analysis is shown with 'x'. A hyphen ('-') indicates values lower than 70% BP or 0.95 PP. Ex-holotype, isotype, paratype and epitype strains are shown in bold and the newly obtained sequences are shown in red. Strains previously described as Phialemoniopsis species are marked with a blue circle. The scale bar represents nucleotide substitutions per site.
Figure 6 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 6 Colony characters of Thyridium species used in this study on MEA (bottom right), OA (bottom left) and PDA (upper) within 1 week at 25 °C in the dark AT. flavostromatum (culture KT 3891 = MAFF 247509) BT. pluriloculosum (culture KT 3803 = MAFF 247508) CT. punctulatum (culture KT 3905 = MAFF 247510). Scale bars: 3 cm (A–C).
Figure 5 from: Sugita R, Tanaka K (2022) Thyridium revised: Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales. MycoKeys 86: 147-176. https://doi.org/10.3897/mycokeys.86.78989
Figure 5 Thyridium punctulatum (A–N, Q, R KT 3905 = HHUF 30649 O, P YAM 21851 S, T, W–AB culture KT 1015 = JCM 13159 = MAFF 239669 U, V, AC–AK culture KT 3905 = MAFF 247510) A–R sexual morph A, B appearance of stromata on substrate C, D ascomata in longitudinal section E ostiolar neck of ascoma F paraphyses G ascomatal wall H–J asci K apex of ascus L stipe of ascus M–Q ascospores R germinating ascospore S–AD coelomycetous asexual morph S–V conidiomata in culture W conidioma in longitudinal section X conidiomatal wall Y setose hyphae of conidiomata Z, AA conidiophores AB phialides AC, AD conidia AE–AK hyphomycetous synasexual morph AE conidiophore AF slimy head AG phialide AH–AJ conidia AK chlamydospores. Scale bars: 1 mm (A, S); 500 µm (B); 100 µm (C, W); 50 µm (D); 10 µm (E–J, L, R, X–AA, AE, AF); 5 µm (K, M–Q, AB–AD, AG–AK); 200 µm (T–V).
Figure 4 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053
Figure 4 The proportion of false-negative sequences (had reasonable matches; green) and false-negative sequences (had close matches; blue) out of all kingdom-level sequences over time (2001-2020). The figure suggests that the act of taking sequence annotation very lightly is not in an abating trend. The data for 2020 extend through early November 2020 and are thus partial.
Supplementary material 1 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053
A list of the 29 journals under the Web of Science heading "Mycology" as of November 2020
Figure 2 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053
Figure 2 Pie chart representing all the 95,055 kingdom-level ITS sequences and the proportion of these that were true-positives (had no or only very distant taxonomically more well-annotated BLAST matches at the time of sequence deposition/release; red, 10%), false-negatives (had only reasonable matches; green, 17%) and false-negatives (had close matches; blue, 73%). The chart suggests that nearly all kingdom-level fungal ITS sequences in INSDC could have been given a more taxonomically-resolved name at the time of sequence deposition/release.
Figure 3 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053
Figure 3 The top 15 most common countries of collection for the publication-associated sequences annotated at or beyond the phylum level (green) expressed as the proportion of the sequences stemming from each country out of all phylum-level-and-beyond sequences. The corresponding country for publication-associated sequences annotated only at the kingdom level (orange) is similarly expressed as the proportion of sequences stemming from that country out of all kingdom-level sequences. The figure is ordered in decreasing order by the country of collection for the phylum-level sequences.
Figure 1 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053
Figure 1 A screenshot from species hypothesis SH1159264.08FU (Vishniacozyma victoriae; https://dx.doi.org/10.15156/BIO/SH1159264.08FU) in UNITE. Identifying a Vishniacozyma victoriaeITS sequence to at least the genus level is trivial, yet the screenshot hints at the swathes of kingdom level-annotated Vishniacozyma victoriae sequences regularly deposited in the INSDC. SequenceID – INSDC accession number. UNITE taxon name – taxonomic annotation in UNITE. INSD taxon name – original taxonomic annotation in INSDC. RefSeq – indicates a type-derived sequence. More than thirty studies have deposited kingdom-level annotations in this species hypothesis. The ones shown primarily stem from Nishizawa et al. (2010).
Figure 5 from: Villarroel AE, Menegoz K, Le Quesne C, Moreno-Gonzalez R (2022) Valeriana praecipitis (Caprifoliaceae), a species new to science and endemic to Central Chile. PhytoKeys 189: 81-98. https://doi.org/10.3897/phytokeys.189.73959
Figure 5 Habitat of Valeriana praecipitis (red arrow indicates the species) A, B Laguna Añil C Laguna del Florido. Photographed by Alejandro E. Villarroel and Kora Menegoz.
Figure 4 from: Villarroel AE, Menegoz K, Le Quesne C, Moreno-Gonzalez R (2022) Valeriana praecipitis (Caprifoliaceae), a species new to science and endemic to Central Chile. PhytoKeys 189: 81-98. https://doi.org/10.3897/phytokeys.189.73959
Figure 4 Valeriana praecipitisA, B plants growing in natural habitat C rhizome, secondary-tertiary roots D basal leaves with lobes detail E petioles F floral stem, corymboid inflorescence G floral stem, thyrse inflorescence H upper leaves I, J detail of flowers (stamens, style) K bracteoles, ovary, calyx L dry inflorescence, bracts, bracteoles M fruit, pappus. Photographed by Alejandro E. Villarroel and Kora Menegoz.
Figure 3 from: Villarroel AE, Menegoz K, Le Quesne C, Moreno-Gonzalez R (2022) Valeriana praecipitis (Caprifoliaceae), a species new to science and endemic to Central Chile. PhytoKeys 189: 81-98. https://doi.org/10.3897/phytokeys.189.73959
Figure 3 Valeriana praecipitisA habit B, C fruit D detail of flower E stigma F bracteole G bract H upper leave. Drawn by Arón Cádiz-Véliz.
Figure 1 from: Villarroel AE, Menegoz K, Le Quesne C, Moreno-Gonzalez R (2022) Valeriana praecipitis (Caprifoliaceae), a species new to science and endemic to Central Chile. PhytoKeys 189: 81-98. https://doi.org/10.3897/phytokeys.189.73959
Figure 1 Distribution maps of Valeriana praecipitisA Chile B Ñuble Region C sites of V. praecipitis (yellow stars) and extent of occurrence (red line).
Figure 3 from: Năstase-Bucur R, Allegrucci G, Ketmaier V, Mirea IC, Moldovan OT (2022) Comparative phylogeography of two troglobitic Coleoptera (Leiodidae, Leptodirini) species from Romania based on mitochondrial DNA. Subterranean Biology 42: 61-78. https://doi.org/10.3897/subtbiol.42.73524
Figure 3 Minimum spanning networks a for P. gracile with haplotypes H1–H7 and b for P. leptodirum with haplotypes H8–H11. Multiple mutational steps between haplotypes H1–H3 and H8–H9 could be either un-sampled haplotypes or extinct ones. Haplotype numbers are as in Table 1.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.