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1,199 results for “Alignement”
The dataset for "Force-free current sheets in the Jovian magnetodisk: a key role of electron field-aligned anisotropy"
<p>The dataset for "Force-free current sheets in the Jovian magnetodisk: a key role of electron field-aligned anisotropy" submitted to J. Geophys. Res. This dataset contains information about 18 current sheet in the Jovian magnetodisk. PDF file includes the table and eighteen figures with current sheets. The table lists corresponding dates/times of the current sheet crossings by Juno spacecraft. Archive includes ASCII flies with data plotted on these figures.</p>
Stereodynamical control of the H+HD→H2+D reaction through HD reagent alignment
<p><span>Prealigning nonpolar reacting molecules leads to large stereodynamical effects because of their weak steering interaction en route to the reaction barrier. However, experimental limitations in preparing aligned molecules efficiently have hindered the investigation of steric effects in bimolecular reactions involving hydrogen. Here we report a high-resolution crossed-beam study of the reaction H+HD(<em>ν</em>=1, <em>j</em>=2)→H<sub>2</sub>(<em>ν</em>', <em>j'</em>)+D at collision energies of 0.50, 1.20, and 2.07 electron volts, in which the vibrationally excited hydrogen deuteride(HD) molecules were prepared in two collision configurations, with their bond, preferentially aligned parallel and perpendicular to the relative velocity of collision partners. Notable stereodynamical effects in differential cross-sections were observed. Quantum dynamics calculations revealed that strong constructive interference in the perpendicular configuration plays an important role in the stereodynamical effects observed.</span></p>
alignment of cathepsin and silicatein sequences
<p>alignment used to build the cathepsin/silicatein tree provided in supplementary figures</p>
Supplementary alignment, phylogenetic, and biogeographic analysis data for: Phylogenomics of Gars
<p>Reconstructing deep-time biogeographic histories is limited by the comparatively recent diversification of most extant lineages. Ray-finned fishes (Actinopterygii), which include more than half of living vertebrates, are no exception. Although many of the most species-rich clades of ray-finned fishes diversified after the Cretaceous-Paleogene mass extinction, a handful of ancient and species-depauperate lineages persist today. One of the most iconic ancient lineages of ray-finned fishes are gars, a clade of seven freshwater species restricted to continental North America and Cuba. Here, we use DNA sequences of more than 1,000 exons collected for all living species of gars and a morphological dataset that includes 16 fossil species to infer their phylogenetic relationships and estimate divergence times using fossil-tip dated relaxed molecular clock analyses. Our analyses show that the two major lineages of living gars, <em>Atractosteus</em> and <em>Lepisosteus, </em>diverged approximately 105 million years ago. Using the time-calibrated phylogeny of the living and fossil gar species and model-based biogeographic reconstructions, we find that many of the inferred vicariant events in the evolutionary history of gars closely track the Mesozoic fragmentation of Laurasia in the Northern Hemisphere and the Cretaceous reorganization of North American river drainage systems. In particular, we tie the initial diversification of living gars to the expansion of the early Atlantic and subsequent loss of shallow marine habitat between the Americas and Africa in the Cretaceous. All living gar species originated after the Cretaceous in eastern North America, implying that this region has both served as the ancestral area of extant gar diversity and a refugium of this iconic ancient vertebrate lineage.</p>
E-cadherin in developing murine T cells controls spindle alignment and progression through β-selection
<p>Timelapse images of DN3a cells from E-cadherin<sup>flox/flox </sup>mice transfected with GFP (E-cad<sup>+</sup>) or GFP-cre (E-cad<sup>-</sup>) and cherry-ap2a2</p> <p> </p> <p>Extracted time points from additional movies which included dividing DN3a cells and analysed for asymmetric distribution of cherry-ap2a2 (alpha-adaptin) </p>
E-cadherin in developing murine T cells controls spindle alignment and progression through β-selection
<p>Confocal images of fixed DN3a cells </p> <p>Timelapse images of DN3a cells from E-cadherin<sup>flox/flox </sup>mice transfected with GFP (E-cad<sup>+</sup>) or GFP-cre (E-cad<sup>-</sup>) and cherry-tubulin</p>
Synthetic data for Aligning Distant Sequences to Graphs using Long Seed Sketches
<p>Each directory inside the folder correponds to the number of levels used to generate the dataset (for more details, see the description written in the publication). Inside each directory, the files "reference_X" and "mutated_X" correpond to the sequences reference and mutated at rate X, respectively. </p>
Response_reg and ABC_tran: monster benchmark families for multiple sequence alignments
<p>The data set contains two benchmark families: Response_reg (1.8 million sequences) and ABC_tran (3.5 million sequences). The sets were constructed by combining Homstrad reference alignments (November 2022) with Pfam 35 UniProt complete families (PF00072 and PF00005).</p>
Genome Alignment of Cancer Sequencing Data
<p>Part of the GTN Cancer Analysis learning Pathway based on the Bioinformatics.ca Cancer Workshop</p>
Multiple alignment file of full-length SWEETs from A. thaliana, O. sativa, P. equestris, and D. officinale
<p>Multiple alignment file of full-length SWEETs from A. thaliana, O. sativa, P. equestris, and D. officinale for phylogenetic tree construction.</p>
EPSAPG: A Pipeline Combining MMseqs2 and PSI-BLAST to Quickly Generate Extensive Protein Sequence Alignment Profiles
<p>This repository contains all data, queries, and search results used in the analysis of</p> <ul> <li>Arab, Issar. “<strong>EPSAPG: A Pipeline Combining MMseqs2 and PSI-BLAST to Quickly Generate</strong><br><strong>Extensive Protein Sequence Alignment Profiles</strong>.” IEEE/ACM 10th International Conference on<br>Big Data Computing, Applications and Technologies (BDCAT ’23), December 4–7, 2023,<br>Taormina, Messina, Italy. <a href="https://doi.org/10.1145/3632366.3632384">doi.org/10.1145/3632366.3632384</a></li> </ul>
Aligned peaks for the FT-ICR MS spectra of SRNOM and ELDOM
<p>These spreadsheets contain the aligned peaks for the FT-ICR MS spectra of SRNOM and ELDOM, which are attached to the manuscript submitted to Journal of the American Society for Mass Spectrometry (Manuscript ID: js-2023-002084).</p>
Data and code for "An open-source alignment method for multichannel infinite-conjugate microscopes using a ray transfer matrix analysis model"
<p>Original data and code associated with the paper "An open-source alignment method for multichannel infinite-conjugate microscopes using a ray transfer matrix analysis model".<br> <br> Further details on the data are available in the readme.txt files.</p>
Anti-Aligning Self-Propelled Particles Data Set
<p>Simulation Data from agent-based simulations, using aappp software (see https://github.com/kuersten/aappp)</p> <p>and numerical values of eigenvectors of linear stability analysis.</p> <p>Data refers to the paper https://doi.org/10.48550/arXiv.2304.05476</p>
Enhancing Protein Sequence Annotation in Viral Genomics Using Large Language Models and Soft Alignments.
<p>List of 200 most abundant VOG descriptions.</p>
Fig. 4. Amino acid sequences alignment between TCS1 and candidate N in Discovery and Biochemical Characterization of N-methyltransferase Genes Involved in Purine Alkaloid Biosynthetic Pathway of Camellia gymnogyna Hung T.Chang (Theaceae) from Dayao Mountain
Fig. 4. Amino acid sequences alignment between TCS1 and candidate N-methyltransferase genes (GCS1, GCS2, and GCS3).
Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data
<p>Source data for the paper "Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data"</p>
G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics
<p>Benchmark datasets, manual annotation results, evaluation methods and results of the paper "G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics".</p>
Electrical Alignment Signatures of Ice Particles before Intracloud Lightning Activity Detected by Dual-polarized Phased Array Weather Radar
<p>lightning data from LIDEN system and the data of the Dual-polarized Phased Array Weather Radar (DP-PAWR) on August 20, 2019. </p>
Accuracy and Periodontal Outcomes of Three Interproximal Enamel Reduction Techniques During Clear Aligner Therapy
ClinicalTrials.gov study NCT07377825. IPD Sharing: NO. Countries: 1. Publications: 8.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.