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A New Model of Interpretation and Communication for Ensemble Music-Making - Appendices
<p>Appendices for Music Ph.D</p>
Behavioral and electrocortical effects of transcranial alternating current stimulation during advice-guided decision-making - raw data
<p>Raw EEG and behavioral data of the study "Behavioral and electrocortical effects of transcranial alternating current stimulation during advice-guided decision-making"</p>
Figure 2 in Apocrine secretion of the egg hull in oogenesis and exclusion of sperm organelles at fertilization make reproduction in Chitonida (Mollusca) unique
Figure 2. (A) Portion of Figure 1C enlarged to show a region (boxed area) of apical bleb formation and aposome release from oocyte (O) into the forming hull (H). Scale bar = 2 µm. Inset: centriole (C) with rootlets in cytoplasm of late oocyte. Scale bar = 0.3 µm. (B) 3D image of microapocrine secretion from the oocyte (O) to the forming hull (H) created from an area similar to that in box in (A). Image was formed from 12 digitized serial sections entered into 'Reconstruct'. (C) TEM of Littorina sitkana bursa copulatrix, showing macroapocrine secretions (MS) being released from the cell surface (CS) to the lumen. Scale bar = 10 μm.
Figure 1 in Apocrine secretion of the egg hull in oogenesis and exclusion of sperm organelles at fertilization make reproduction in Chitonida (Mollusca) unique
Figure 1. (A) Scanning electron micrograph (SEM) of oocyte type with closed hull cupules (C) found in some species of Acanthochitona and Cyanoplax. The example is Cyanoplax dentiens. Scale bar = 40 µm. (B) Transmission electron micrograph (TEM) of section of later stage oocyte (O) of A. garnoti showing characteristic form of closed cupules (C). FC, follicle cell. Scale bar = 10 µm. (C) TEM of forming hull cupule (H) of A. garnoti showing three areas of microapocrine secretion (arrows) from surface of oocyte (O). FN, follicle cell nucleus. Scale bar = 5 µm. (D) TEM of one region of microapocrine secretion release below the forming hull (H). Note elongate apical blebs (AB), like microvilli, extending from cell membrane of oocyte (O). Micro-aposomes are pinched off and released into the intercellular space, where the hull is forming. Note also: rare Golgi vesicle exocytosis (arrow). Scale bar = 1 µm. (E) TEM detail of
Figure 3 in Apocrine secretion of the egg hull in oogenesis and exclusion of sperm organelles at fertilization make reproduction in Chitonida (Mollusca) unique
Figure 3. (A) SEM of egg of Stenosemus albus exhibiting the spinous hull typical of Chitonina. Scale bar = 50 µm. (B) SEM of portion of egg of S. albus showing sperm (arrow) penetrating one of a series of pores in the hull (P) located at the bases of spines. Scale bar = 5 μm. (C) Tip of needle-like extension of sperm of S. albus, showing acrosomal vesicle (AV) and tip of nuclear filament (N). Scale bar = 0.1 µm. (D) Light micrograph (LM) taken with Nomarski optics of
Correlated decision making across multiple phases of olfactory guided search in Drosophila
<p>All motile organisms must search for food, often requiring the exploration of heterogeneous environments across a wide range of spatial scales. Recent field and laboratory experiments with the fruit fly, <i>Drosophila</i>, have revealed that they employ different strategies across these regimes, including kilometer scale straight-path flights between resource clusters, zig-zagging trajectories to follow odor plumes, and local search on foot after landing. However, little is known about the extent to which experiences in one regime might influence decisions in another. To determine how a flies' odor plume tracking during flight is related to their behavior after landing, I tracked the behavior of individually labelled fruit flies as they explored an array of three odor emitting, but food-barren, objects. The distance flies travelled on the objects in search of food was correlated with the time elapsed between their visits, suggesting that their in-flight plume tracking and on-foot local search behaviors are interconnected through a lossy memory-like process.</p>
FIGURE 1 in Making biodiversity discovery more efficient: An exploratory test using Mexican birds
FIGURE 1. Two example predictions of possible distributions of 'unknown' species (i.e., restricted range and poorly known species used here to simulate unknown species) based on ecological characteristics of more widely distributed congener species. The dark outline indicates the 100 km buffer around known occurrences of the less well-known species
Figs. 34 –42 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 34 –42. Dorsal habitus of New World colydiine genera, tribe Synchitini. 34) Megataphrus tenuicornis; 35) Microprius rufulus; 36) Monoedus guttatus; 37) Namunaria guttulata; 38) Neotrichus verrucatus; 39) Notocoxelus sp., Chile; 40) Paha laticollis; 41) Paryphus serratus; 42) Paxillobitoma clinei.
Figs. 1–2. Colydiinae anatomy. 1 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 1–2. Colydiinae anatomy. 1) Antennal types. Club 1-segmented: a) Endeitoma sp., b) Synchita sp., c) Acolobicus sp. Club 2-segmented: d) Colobicus sp., e) Lobogestoria sp. Club 3-segmented: f) Lasconotus sp., g) Colydium sp., h) Rhagodera sp. Club gradual: i) Endestes sp.; 2) Tarsi, prothoracic leg. a) Nematidium sp., b) Lobogestoria sp., c) Pseudaulonium sp., d) Acropis sp., e) Monoedus sp.
Figs. 7–15 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 7–15. Dorsal habitus of New World colydiine genera, tribes Acropini, Colydiini, Gempylodini, and Nematidiini. 7) Acropis maracapatana; 8) Ethelema costaricensis; 9) Plagiope tuberculata; 10) Anarmostes ater; 11) Aulonium longum; 12) Colydium lineola; 13) Pseudaulonium sp., Venezuela; 14) Endestes incilis; 15) Nematidium filiforme.
Figs. 25–33 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 25–33. Dorsal habitus of New World colydiine genera, tribe Synchitini. 25) Endeitoma dentata; 26) Eucicones marginalis; 27) Eudesma undulata; 28) Globotrichus harti; 29) Helonoton ashei; 30) Holopleuridia sp., Panama; 31) Lasconotus complex; 32) Lobogestoria gibbicollis; 33) Lyreus alleni.
Figs. 52–53 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 52–53. Dorsal habitus of New World colydiine genera, tribe Synchitini and incertae sedis. 52) Synchita fuliginosa; 53) Phreatus rigidus.
Figs. 43 –51 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 43 –51. Dorsal habitus of New World colydiine genera, tribe Synchitini. 43) Pharax laticollis; 44) Phloeodalis raucus; 45) Phloeonemus integer; 46) Pristoderus regularis; 47) Pseudocorticus blairi; 48) Rapthius peruvianus; 49) Reylus chilensis; 50) Slipinskius chilensis; 51) Stenomonoedus garleppi.
Figs. 16 –24 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 16 –24. Dorsal habitus of New World colydiine genera, tribes Rhagoderini and Synchitini. 16) Rhagodera texana; 17) Acolobicus erichsoni; 18) Antilissus aper; 19) Asynchita granosa; 20) Bitoma crenata; 21) Colobicus parilis; 22) Colydodes gibbiceps; 23) Coxelus serratus; 24) Denophoelus nosodermoides.
Figs. 5–6. Colydiinae anatomy. 5 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 5–6. Colydiinae anatomy. 5) Heads, ventral view, illustrating the antennal groove. a) Antennal groove absent, b) Antennal groove short, not reaching midpoint of eye, c) Antennal groove long, reaching past midpoint of eye; 6) Generalized elytron, illustrating the alternating intervals and interstriae.
Figs. 3–4. Colydiinae anatomy. 3 in Colydiine Genera (Coleoptera: Zopheridae: Colydiinae) of the New World: A Key and Nomenclatural Acts 30 Years in the Making
Figs. 3–4. Colydiinae anatomy. 3) Prothoraces, ventral view, illustrating procoxal cavity closure (external). a) Broadly open (Holopleuridia sp.), b) Narrowly open (Monoedus sp.), c) Moderately closed (Lasconotus sp.), d) Narrowly closed (Lobogestoria sp.), e) Broadly closed (Nematidium sp.); 4) Abdomina, ventral view. a) Intercoxal process acute, ventrites free, sutures flat, ventrite V with subapical groove, b) Intercoxal process broadly rounded, ventrites I–III connate, c) Intercoxal process truncate, ventrites free, sutures deeply impressed.
Spatially explicit models for decision-making in animal conservation and restoration
<p>Models are useful tools for understanding and predicting ecological patterns and processes. Under ongoing climate and biodiversity change, they can greatly facilitate decision-making in conservation and restoration and help designing adequate management strategies for an uncertain future. Here, we review the use of spatially explicit models for decision support and identify key gaps in current modelling in conservation and restoration. Of 650 reviewed publications, 217 publications had a clear management application and were included in our quantitative analyses. Overall, modelling studies were biased towards static models (79 %), towards the species and population level (80 %) and towards conservation (rather than restoration) applications (71 %). Correlative niche models were the most widely used model type. Dynamic models as well as the gene-to-individual level and the community-to-ecosystem level were underrepresented, and explicit cost optimisation approaches were only used in 10 % of the studies. We present a new model typology for selecting models for animal conservation and restoration, characterising model types according to organisational levels, biological processes of interest and desired management applications. This typology will help to more closely link models to management goals. Additionally, future efforts need to overcome important challenges related to data integration, model integration, and decision-making. We conclude with five key recommendations, suggesting that wider usage of spatially explicit models for decision support can be achieved by (1) developing a toolbox with multiple, easier-to-use methods, (2) improving calibration and validation of dynamic modelling approaches, and (3) developing best-practise guidelines for applying these models. Further, more robust decision-making can be achieved by (4) combining multiple modelling approaches to assess uncertainty, and (5) placing models at the core of adaptive management. These efforts must be accompanied by long-term funding for modelling and monitoring, and improved communication between research and practise to ensure optimal conservation and restoration outcomes.</p>
FIGURES 35–41 in Two new genera of tube-making spittlebugs (Hemiptera: Machaerotidae: Enderleiniini)
FIGURES 35–41. Genitalic features of Kyphomachaerota maaia sp. n. (holotype). 35. Pygofer, lateral view; 36. Pygofer, posterior view; 37. Aedeagus, lateral view; 38. Aedeagus, dorsal view; 39. Parameres, dorsal view; 40. Paramere, external view; 41. Paramere, internal view.
FIGURES 29–32 in Two new genera of tube-making spittlebugs (Hemiptera: Machaerotidae: Enderleiniini)
FIGURES 29–32. General body features of Kyphomachaerota maaia sp. n. (holotype). 29. Head and pronotum, dorsal view; 30. Head, front view; 31. Lateral habitus; 32. Dorsal habitus.
FIGURES 20–21 in Two new genera of tube-making spittlebugs (Hemiptera: Machaerotidae: Enderleiniini)
FIGURES 20–21. Wing features of Labramachaerota korupa sp. n. (holotype). 20. Forewing (tegmen); 21. Hindwing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.