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Supplementary material 2 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
: Data type: multimedia
Figure 7 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 7 Spore morphology and symptoms on fern fronds of Milesinawoodwardiana sp. nov. a Fronds of the host Woodwardiaradicans at the collection site in La Palma. Dark spots indicate areas where sori are formed on the underside (La Palma, Cubo de la Galga, ca. 1.2 km SW of parking lot W San Bartolomé, 11 Aug 2017) b Host leaf with uredinia. Sori (arrows) are restricted to areas between leaf veins (KR-M-0048787, dissecting microscope) c Transverse section of uredinium E=epidermis, P=peridial cells, U=urediniospore, M=mesophyll of host plant (KR-M-0048787, LM, interference contrast) d Urediniospores with long echinulae (KR-M-0049036, paratype, SEM) e Urediniospores, cracked, without plasma, germ pores scattered (KR-M-0049033, paratype; LM, phase contrast) f Germinating urediniospores, arrows point to germ tubes (KR-M-0049033, paratype, LM, phase contrast).
Figure 6 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 6 Urediniospores of 11 Milesina species. aMilesinablechni on Struthiopterisspicant (KR-M-0049039, SEM) bMilesinablechni on Struthiopterisspicant, cracked spore with released plasma, germ pores scattered (KR-M-0038523, LM phase contrast) cMilesinacarpatica on Dryopterisfilix-mas (KR-M-0043192, SEM) dMilesinaexigua on Polystichumbraunii, smooth surface (M, M-020547, SEM) eMilesinaexigua on Polystichumbraunii, smooth surface, plasma-free spore, germ pores bipolar (M, M-0205472, LM, phase contrast) fMilesinafeurichii on Aspleniumseptentrionale with smooth areas on surface (KR-M-0043159, SEM) gMilesinafeurichii on Aspleniumseptentrionale, cracked plasma-free spore, germ pores scattered (KR-M-0043159, LM, phase contrast) hMilesinakriegeriana on Dryopteriscarthusiana (KR-M-0048085, SEM) iMilesinamagnusiana on Aspleniumadiantum-nigrum with smooth areas on surface (M, M-0205474, SEM) jMilesinamagnusiana on Aspleniumadiantum-nigrum, spore plasma-free, germ pores scattered (M, M-0205474, LM, phase contrast) kMilesinamurariae on Aspleniumruta-muraria with smooth areas on surface (KR-M-0035461, SEM) lMilesinamurariae on Aspleniumruta-muraria, cracked spore with released plasma, germ pores scattered (KR-M-0043154, LM, phase contrast) mMilesinapolypodii on Polypodiumvulgare with smooth areas on surface (KR-M-0043173, SEM) nMilesinascolopendrii on Aspleniumscolopendrium with smooth areas on surface (KR-M-0049049, SEM) oMilesinavogesiaca on Polystichumaculeatum, surface with very flat warts at the tip of the spore (arrow) (KR-M-0043160, SEM) pMilesinavogesiaca on Polystichumaculeatum, surface smooth (no warts visible at the tip), germ pores bipolar (KR-M-0043175, LM, phase contrast) qMilesinawhitei on Polystichum sp. (KR-M-0039378, SEM) rMilesinawhitei on Polystichumsetiferum, cracked spore with released plasma, germ pores scattered (KR-M-0049177, LM, phase contrast).
Figure 4 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 4 Deviations from the consensus ITS sequence of section Scolopendriorum. Description as for Figure 3. Milesinafeurichii deviates from the other three species in positions 288 (A) and 521 (G).
Figure 5 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 5 Boxplot of germ pore numbers of urediniospores of 12 Milesina spp. and four sections. For each species 120 spores from two (M.magnusiana), three (M.feurichii) or four (all other species) specimens were evaluated. Median, whisker, quantile and outliers (dots) are shown.
Figure 3 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 3 Deviations from the consensus ITS sequence of section Milesina. The first line indicates the nucleotide positions in base pairs, the second line the consensus sequence. The order of specimens is as shown in Figure 1. "Milesina sp" denotes specimens from Abiesalba. Deviations for single specimens can be found at 5 positions. All specimens of M.blechni and M.woodwardiana deviate at position 381 from M.whitei and kriegeriana.
Figure 2 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 2 Phylograms of supplementary barcodes. The nad6 phylogram is based on a 550 bp alignment, the 28S phylogram on a 680 bp alignment. The technical description is the same as for Figure 1. All Milesina specimens from Figure 1 were attempted to sequence for the supplementary barcodes. Only the shown specimens resulted in sequences. The non-Milesina species were altered depending on availability. No GenBank sequences were included and the genus Chrysomyxa was replaced by Pucciniastrum.
Figure 1 from: Bubner B, Buchheit R, Friedrich F, Kummer V, Scholler M (2019) Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. MycoKeys 48: 1-40. https://doi.org/10.3897/mycokeys.48.30350
Figure 1 ITS Phylogram of 11 Milesina species (excluding M.magnusiana). The phylogram is based on a 733-bp alignment. A Maximum Likelihood (ML) tree is shown with support values for ML, Bayesian Inference (BI) and Neighbour Joining (NJ), in the order ML/BI/NJ. Support values are presented when they are above 50 (ML, NJ) or 0.5 (BI). The host is indicated in brackets. Milesina specimens without species designation (host Abiesalba) are not colour-coded. For comparison, several sequences were included from closely related genera. They were all newly generated within the GBOL project, except the GenBank sequences for Cronartium spp. The drawings on the right side present the typical arrangement of spines and germ pores (grey dots) on the Milesina urediniospores.
Fig. 2 in First record of Atherigona reversura Villeneuve (Diptera: Muscidae) feeding on Bermudagrass (Cynodon dactylon cv. Jiggs, Poaceae) in Brazil: morphological and molecular tools for identification
Fig. 2. Atherigona (Acritochaeta) orientalis: (A) Palpus male, (B) Mesonotum male, dorsal view, (C) Wing. Atherigona (Atherigona) reversura: (D) Palpus male, (E) Mesonotum male, dorsal view, (F) Wing. Abbreviations: b sctl s, basal scutellar seta; dm cell, discal median cell; plp, palpus; R1, radial 1 vein; r-m, radial-medial crossvein; sb l s, subbasal lateral seta; Sc, subcostal; sctl, scutellum.
Fig. 1 in First record of Atherigona reversura Villeneuve (Diptera: Muscidae) feeding on Bermudagrass (Cynodon dactylon cv. Jiggs, Poaceae) in Brazil: morphological and molecular tools for identification
Fig. 1. (A) Cynodon dactylon cv. Jiggs showing plant damage. Atherigona (Atherigona) reversura: (B) larvae; (C) puparium; (D) adult. Scale bars = 1 mm.
Fig. 2. Maximum likelihood 16S in Molecular Identification of a Phage-infected Protochlamydia Strain Naturally Harboured by Non-Encysting Naegleria
Fig. 2. Maximum likelihood 16S rDNA tree of Parachlamydiaceae, showing the major lineages and sublineages, and all the phylotypes assigned to Protochlamydia naegleriophila. The Pcb1 strain recovered here and the reference strain KNic (in bold) are both natural endosymbionts of Naegleria spp. The tree was rooted on members of Criblamydiaceae and Waddliaceae. Bootstrap values (BV) after 1,000 replicates for ML/NJ/MP were indicated at nodes. Filled circle – node 100% supported with all three methods; asterisk – node supported but BV <40%; hyphen – node not supported. Scale bar represents substitution/site.
Fig. 1 in Molecular Identification of a Phage-infected Protochlamydia Strain Naturally Harboured by Non-Encysting Naegleria
Fig. 1. Light microscopy of Pcb-infected Vero cells monolayer at 3 days p.i., showing multiple vacuoles. Scale bar: 20 µm.
Fig. 1. Epistylis semiciculus n in Morphological and molecular identification of epibiontic sessilid Epistylis semiciculus n. sp. (ciliophora, Peritrichia) from Procambarus clarkia (Crustacea, Decapoda) in China
Fig. 1. Epistylis semiciculus n. sp. in vivo. A. Morphotype I stick to the gill of P. clarkia, double arrow shows Carchesium sp., arrow shows the zooids of Poulation I. B. Morphotype II stick to the pereopods of P. clarkia, arrow shows the zooids of Poulation II. Uncontracted zooids of morphotype I. C. Colony of morphotype I. D. Colony of Morphotype II. E. Uncontracted zooids of Morphotype II. F. Stalk, arrow shows the transverse striation. G, H. Macronucleus. I. Transverse striations on pellicle. ATB, aboral trochal band; CV, Contractile vacuole; Ma, macronucleus; PD, peristomial disk; PL, peristomial lip. Scale bars: A = 200 μm; B = 3 mm; C = 40 μm; D = 400 μm; E, F, G, H, I = 20 μm.
Fig. 1 in Cryptosporidium spp. in wild rats (Rattus spp.) from the Hainan Province, China: Molecular detection, species/genotype identification and implications for public health
Fig. 1. Geographical locations of rat sources involved in the present study in Hainan Province, China.
Figure 1 in Molecular identification of selected crabs from Odisha coast in Eastern India
Figure 1. Selected crab species from Odisha state and successful PCR amplification of mitochondrial COI gene.
Figures 5–11 in Morphological, ultrastructural, and molecular identification of a new microsporidian pathogen isolated from Crepidodera aurata (Coleoptera, Chrysomelidae)
Figures 5–11. Ultrastructure of spores of the new microsporidian pathogen from Crepidodera aurata. 5–8. Longitudinal sections through the mature spores isolated from the same host species at different times. All spores have unpaired nuclei. 9, 10. Anterior part of the mature spore. Two parts of the polaroplast are noticeable. 11. Cross-section of polar filament. Six layers of the isofilar polar filament are clearly visible. AD: Anchoring disk; EN: Endospore; EX: Exospore; MA: Manubrium; N: Nucleus; PF: Polar filament; PFs: the small cross-sections of the polar filament; PP: Polaroplast; PP1: lamellar and PP2: vesicular part of the polaroplast; PS: polar sac. Scale bars: 1 µm for Figures 5–7, 0.2 µm for Figures 8–10, and 0.1 µm for Figure 11.
Figures 1–4 in Morphological, ultrastructural, and molecular identification of a new microsporidian pathogen isolated from Crepidodera aurata (Coleoptera, Chrysomelidae)
Figures 1–4. Light microscopy of fresh (1) and Giemsa-stained stages (2–4) of the new microsporidian pathogen from Crepidodera aurata. Note that all stages have unpaired nuclei (no diplokarya) and are located in direct contact with the host-cell cytoplasm and not inside parasitophorous vacuoles. 1. Fresh spores. 2. Meronts (arrows). 3. Sporonts (arrows) and sporoblasts (arrowheads). 4. Mature spores. Scale bars: 5 µm.
Fig. 2 in Molecular identification of Taenia hydatigena and Mesocestoides species based on copro-DNA analysis of wild carnivores in Mongolia
Fig. 2. Phylogenetic tree based on a partial sequence of tapeworms obtained by the neighbor joining method was conducted using the TN93 + I nucleotide substitution model. Numbers above branches are percent bootstrap values based on 1,000 replicates. Bootstrap value> 70% are shown. (a) Phylogenetic tree based on the cox1 sequences of T. hydatigenaand Mesocestoides sp. isolates available in the GenBankṜ database were included. Hymenolepis nana served as an out-group. (b) Phylogenetic analysis of the 12SrRNA partial sequence of T. hydatigena, Mesocestoides sp., and M. lineatus inferred using the sequence distance method and maximum likelihood. Hymenolepis nana was used as an out-group.
FIGURE 2 in Morphological and molecular identification of a new species of Atraporiella (Polyporales, Basidiomycota) in China
FIGURE 2. Basidiomata of Atraporiella yunnanensis (holotype). Scale bars: a—3 mm; b—2 mm.
FIGURE 1 in Molecular Identification of Delphinids and Finless Porpoise (Cetacea) from the Arabian Sea and Bay of Bengal
FIGURE 1. Locations where delphinids and finless porpoise were sampled in the present study
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