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APPENDIX 3. — Maximum likelihood phylogram inferred from 47 taxa and 3314 in Mucoralean fungi in Thailand: novel species of Absidia from tropical forest soil
APPENDIX 3. — Maximum likelihood phylogram inferred from 47 taxa and 3314 characters based on LSU, SSU and ACT-1 matrix using GTR+G model. ML bootstrap support (≥ 70%) are indicated above the branches or near the nodes. Tree is artificially rooted using Cunninghamella homothallica (CBS 168.53), C. phaeospora (CBS 692.68), and C. bainieri (FSU319). The new species are in black bold and the type species in the dataset are indicated using T. (-) represent bootstrap support lower than 70%. (*) indicates unrecovered branching.
FIG. 7 in Mucoralean fungi in Thailand: novel species of Absidia from tropical forest soil
FIG. 7. — Mycelial growth of A. edaphica V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov.(MFLUCC 20-0088, ex-type) and A. soli V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov. (MFLUCC 20-0086, ex-type) in various media at room temperature (around 26°C to 27°C) after two days: A-D, colonies on MEA; E-H, colonies on PDA; I-L, colonies on CMA; M-P, colonies on YMA. The first two rows represent colonies of of A. edaphica sp. nov. and the bottom two rows A. soli sp. nov (obverse (first and third rows) and reverse (second and fourth rows).
FIG. 6 in Mucoralean fungi in Thailand: novel species of Absidia from tropical forest soil
FIG. 6. — Mycelial growth of Absidia edaphica V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov. and Absidia soli V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov. in different media at 25°C.
Data from: Impact of ground-level ozone on tropical forests
<p>Elevated ground-level ozone (O<sub>3</sub>), a result of human activity, is known to reduce plant productivity but its impact on tropical forests remains unclear. Here for the first-time we measured the O<sub>3</sub> susceptibility in a range of ten tropical tree species and use these data to determine how changing O<sub>3</sub> exposure has impacted tropical forest productivity and the global carbon cycle.</p>
The interaction of physical structure and nutrient loading drives ecosystem change in a large tropical lake over 40 years (DATA)
<p><strong><span>Datasets for manuscript entitled "The interaction of physical structure and nutrient loading drives ecosystem change in a large tropical lake over 40 years"</span></strong></p> <p><em><span>Includes data collected by Fadum and Hall as well as unplublished data from Vaux and Goldman 1984.</span></em></p> <p><span><strong>Abstract: </strong>Many lakes across the world are entering novel states and experiencing altered biogeochemical cycling due to local anthropogenic stressors. In the tropics, understanding the drivers of these changes can be difficult due to a lack of documented historic conditions or an absence of continuous monitoring that can distinguish between intra- and inter-annual variation. Over the last forty years (1980–2020), Lake Yojoa (Honduras) has experienced increased watershed development as well as the introduction of a large net-pen Tilapia farm, resulting in a dramatic reduction in seasonal water clarity, increased trophic state and altered nutrient dynamics, shifting Lake Yojoa from an oligotrophic (low productivity) to mesotrophic (moderate productivity) ecosystem. To assess the changes that have occurred in Lake Yojoa as well as putative drivers for those changes, we compared Secchi depth (water clarity), dissolved inorganic nitrogen (DIN), and total phosphorus (TP) concentrations at continuous semi-monthly intervals for the three years between 1979 and 1983 and again at continuous 16-day intervals for 2018–2020. Between those two periods we observed the loss of a clear water phase that previously occurred in the months when the water column was fully mixed. Seasonal peaks in DIN coincident with mixing suggest that an enhanced accumulation of ammonium in the hypolimnion (the bottom layer of a stratified lake) during stratification, and release to the epilimnion (the top layer of a stratified lake) with mixing maintains high algal abundance and subsequently low Secchi depth during what was previously the clear water phase. This interaction of nutrient loading and Lake Yojoa's monomictic stratification regime illustrates a key phenomenon in how physical water column structure and nutrients interact in tropical monomictic lakes. This work highlights the need to consider nutrient dynamics of warm anoxic hypolimnions, not just surface water nutrient concentrations, to understand environmental change in these societally important but understudied ecosystems.</span></p> <p> </p> <p><em><strong><span>(for more recent years of data collection see additional zenodo repositories by Fadum and/or Hall) </span></strong></em></p>
Physical connection between the tropical Indian Ocean tripole and western Tibetan Plateau surface air temperature during boreal summer
<p><em>These experiments are used to study atmospheric circulation responses to SST forcing related to Indian Ocean tripole mode, including the precipitation, omega, geopotential height, zonal and meridional winds.</em></p>
Fig. 7 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 7. Aporcelaimellus insularis sp. n. A–C: posterior ends of three females (B: holotype). (Scale bar 20 µm)
Fig. 6 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 6. Aporcelaimellus insularis sp. n. A–B: anterior ends; C–D: vulval regions (note the heartshaped vulval lips). (Scale bars 20 µm each)
Fig. 5 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 5. Schematic drawings of tails of nine Aporcelaimellus species each showing concave contour on dorsal side (tails subdigitate, digitate or mammillate). A: A. heynsi BAQRI et JAIRAJPURI, 1968; B: A. duhouxi (ALTHERR, 1963); C: A. glandus BOTHA et HEYNS, 1991; D: A. samarcandicus (TULAGANOV, 1949); E: A. medius ANDRÁSSY, 2002; F: A. seinhorsti (MEYL, 1957); G: A. krygeri
Fig. 2. Aporcelaimellus amazonicus. A–C in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 2. Aporcelaimellus amazonicus. A–C: Posterior ends of three females (C: holotype.) (Scale bar 20 µm)
Fig. 3 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 3. Maps of oesophageal gland nuclei in the two new Aporcelaimellus species. A–B: A. amazonicus sp. n., two females; C–D: A. insularis sp. n., two females
Fig. 4 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 4. Schematic drawings of tails of nine Aporcelaimellus species each showing concave contour on dorsal side (tails subdigitate, digitate or mammillate). A: A. estonicus (KRALL, 1957); B: A. cocophilus (LOOS, 1949); C: A. chauhani BAQRI et KHERA, 1975; D: A. gerlachi (MEYL, 1956); E: A. maitai YEATES, 1967; F: A. kikereensis BAQRI et COOMANS, 1973; G: A. paracentrocercus (DE CONINCK, 1935); H: A. pycnus (THORNE, 1939); I: A. alius ANDRÁSSY, 2002
Fig. 1 in Two New Species Of Aporcelaimellus Heyns, 1965 (Nematoda: Dorylaimida) From The Tropics
Fig. 1. Aporcelaimellus amazonicus sp. n. A–B: anterior ends; C–D: vulval regions (note the long and narrow vulval lips). (Scale bars 20 µm each)
Figs 6–10 in Two New Species Of Lophomilia Warren, 1913 (Lepidoptera: Noctuidae, Hypeninae) From Asian Tropics
Figs 6–10. Genitalia of the two new Lophomilia species: 6–7 = L. fusca sp. n., male, paratype; 8–9 = L. posteburna sp. n., male, holotype; 10 = L. fusca sp. n., female, paratype, genitalia
Figs 1–5 in Two New Species Of Lophomilia Warren, 1913 (Lepidoptera: Noctuidae, Hypeninae) From Asian Tropics
Figs 1–5. Two new species of Lophomilia. 1–2 = L. fusca sp. n.: 1 = holotype, 2 = paratype; 3–5 = L. posteburna sp. n.: 3 = holotype, 4–5 = paratypes
Dataset for "The Role of Microbial Communities in Biogeochemical Cycles and Greenhouse Gas Emissions within Tropical Soda Lakes"
<p>Here, we make available 27 raw metagenomic files in fastq.gz associated to the article: "The Role of Microbial Communities in Biogeochemical Cycles and Greenhouse Gas Emissions within Tropical Soda Lakes". This files is not paired, with forward as _1.fastq.gz and reverse as _2.fastq.gz. The abstract of manuscript is described below:<br><br></p> <p>Abstract</p> <p>Although anthropogenic activities are the primary drivers of increased greenhouse gas (GHG) emissions, it is crucial to acknowledge that wetlands are a significant source of these gases. Brazil's Pantanal, the largest tropical inland wetland, includes numerous lacustrine systems with freshwater and soda lakes. This study focuses on soda lakes to explore potential biogeochemical cycling and the contribution of biogenic GHG emissions from the water column, particularly methane. Both seasonal variations and the eutrophic status of each examined lake significantly influenced GHG emissions. Eutrophic turbid lakes (ET) showed remarkable methane emissions, likely due to cyanobacterial blooms. The decomposition of cyanobacterial cells, along with the influx of organic carbon through photosynthesis, accelerated the degradation of high organic matter content in the water column by the heterotrophic community. This process released byproducts that were subsequently metabolized in the sediment leading to methane production, more pronounced during periods of increased drought. In contrast, oligotrophic turbid lakes (OT) avoided methane emissions due to high sulfate levels in the water, though they did emit CO2 and N2O. Clear vegetated oligotrophic turbid lakes (CVO) also emitted methane, possibly from organic matter input during plant detritus decomposition, albeit at lower levels than ET. Over the years, a concerning trend has emerged in the Nhecolândia subregion of Brazil's Pantanal, where the prevalence of lakes with cyanobacterial blooms is increasing. This indicates the potential for these areas to become significant GHG emitters in the future. The study highlights the critical role of microbial communities in regulating GHG emissions in soda lakes, emphasizing their broader implications for global GHG inventories. Thus, it advocates for sustained research efforts and conservation initiatives in this environmentally critical habitat.</p> <p><strong> </strong></p>
Figure 1 in Brodifacoum residues in fish three years after an island-wide rat eradication attempt in the tropical Pacific
Figure 1. Wake Island with the seven sampling locations marked by arrows. Site names include: 1 – Peale Lagoon Side, 2 – Ioke Beach House, 3 – Waterplant Outfall, 4 – Battery Dump Pond, 5 – Southern Runway Windsock (not sampled in this study), 6 – Old AF Beach House, 7 – Nitro Rock. Image courtesy of U.S. Air Force Civil Engineer Center.
Fig 11. Capsicum neei Barboza & X in Four new species of Capsicum (Solanaceae) from the tropical Andes and an update on the phylogeny of the genus
Fig 11. Capsicum neei Barboza & X. Reyes. (A) Plant. (B) Flower bud. (C) Flowering branch. Photos by G. E. Barboza. https://doi.org/10.1371/journal.pone.0209792.g011
Fig 10. Capsicum neei Barboza & X in Four new species of Capsicum (Solanaceae) from the tropical Andes and an update on the phylogeny of the genus
Fig 10. Capsicum neei Barboza & X. Reyes. (A) Flowering branch. (B) Inflorescence. (C) Flower bud. (D) Flower. (E) Calyx. (F) Opened corolla. (G) Gynoecium (H) Fruit. (I) Glandular trichome of the inside calyx. (J) Glandular trichome of the pedicels. (K)
Fig 6 in Four new species of Capsicum (Solanaceae) from the tropical Andes and an update on the phylogeny of the genus
Fig 6. Bayesian majority-rule consensus tree of Capsicum. Posterior probabilities values indicated by each branch. New species are highlighted in bold-colored letters and the clade to which they belong is indicated. https://doi.org/10.1371/journal.pone.0209792.g006
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.