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Figure 2 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 2 Mitochondrial gene arrangement of 12 species of Vespidae. The red fonts indicate the rearrangement of the genes.
Figure 4 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 4 Relative synonymous codon usage (RSCU) in Vespidae. Codon families are displayed along the x-axis.
Figure 1 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 1 The mitochondrial genome of O.a.aterrimus. Arrows indicate the direction of genes. Abbreviations of the gene name are as follows: nad1-4 and nad4L act as nicotinamide adenine dinucleotide hydrogen dehydrogenase subunits 1-6 and 4L; cox1, cox2, and cox3 act as the cytochrome C oxidase subunits; cytb act as cytochrome b; atp8 and atp6 act as adenosine triphosphate synthase subunits 6 and 8; rrnL and rrnS act as large and small rRNA subunits; In addition, CR indicates control region and NCR indicates non-coding region.
Supplementary material 1 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
: Data type: molecular data
Figure 4 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 4 Hypotheses of phylogenetic relationships among subfamilies of the Unionidae form this and other studies. ALopes-Lima et al. (2017a)BBolotov et al. (2017a)CHuang et al. 2013; Burzyński et al. 2017; Huang et al. 2018; Wu et al. 2016, 2017bD This study.
Figure 2 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 2 The gene arrangement of the F-type mitochondrial genome of Acuticostachinensis, Schistodesmuslampreyanus, Cuneopsisheudei, and Cuneopsiscapitatus.
Figure 3 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 3 Phylogenetic trees of freshwater mussels obtained by Bayesian Inference (BI) and Maximum Likelihood (ML) analyses of 12 mitochondrial protein-coding gene sequences (except atp8) and two rRNA combined dataset. Support values above the branches are posterior probabilities and bootstrap support. (*) indicates 100 percent bootstrap support and posterior probabilities. Red font indicates Chinese species.
Figure 1 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 1 Shells of the unionids species in this study. AAcuticostachinensis (Lea, 1868) BSchistodesmuslampreyanus (Baird & Adams, 1867) CCuneopsisheudei (Heude, 1874) DCuneopsiscapitatus (Heude, 1874). Scale bar: 4 cm. Photogaphs R-W Wu.
FIGURE 1 in The complete mitochondrial genome of the jumping grasshopper Sinopodisma pieli (Orthoptera: Acrididae) and the phylogenetic analysis of Melanoplinae
FIGURE 1. Gene map of the S. pieli mitogenome.
Supplementary material 1 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
: Data type: phylogenetic data
Supplementary material 2 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
: Data type: molecular data
Figure 6 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 6 Phylogenetic tree of the eleven sequenced stoneflies. Bayesian inference and Maximum Likelihood analysis inferred from PCGs, PCGR, PCG12, and PCG12R supported the same topological structure. Values at nodes are Bayesian posterior probabilities (up) and ML bootstrap values (down) using the PCGs, PCGR, PCG12, and PCG12R datasets. The tree was rooted with two outgroups (P.princeps and S.spinicercia).
Figure 4 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 4 Predicted secondary structure of the srRNA in M.tritaenia. Key: red circle, nucleotide conserved in three nemourid mitogenomes; green circle, nucleotide not conserved. Roman numerals represent the conserved domain structures. Dashes (−) indicate Watson–Crick base pairing, and dots (·) indicate G–U base pairing I–VI indicate six domains in the secondary structure of srRNA.
Figure 3 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 3 Predicted secondary structure of the lrRNA in M.tritaenia. Key: red circle, nucleotide conserved in three nemourid mitogenomes; green circle, nucleotide not conserved. Roman numerals represent the conserved domain structures. Dashes (−) indicate Watson-Crick base pairing, and dots (·) indicate G–U base pairing I–VI indicate six domains in the secondary structure of lrRNA.
Figure 5 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 5 A+T-rich region of two nemourid mitogenomes A structure elements found in the A+T-rich region of two nemourid mitogenomes. TR is the abbreviation of tandem repeat units B putative stem-loop structures found in the A+T-rich region of M.metafiligera (MM indicate M.metafiligera) C putative stem-loop structures found in the A+T-rich region of M.tritaenia (MT indicate M.tritaenia).
Figure 2 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 2 Secondary structure of tRNA families in nemourid mitogenomes. The nucleotide substitution pattern for each tRNA family is modeled using as reference the structure determined for M.tritaenia. Red arrows correspond to insertions. Inferred Watson-Crick bonds are illustrated by lines, whereas GU bonds are illustrated by dots.
Figure 1 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 1 Map of the mitogenomes of M.metafiligera and M.tritaenia. Genes shown on the inside of the map are transcribed in a clockwise direction, whereas those on the outside of the map are transcribed counterclockwise. Different gene types are shown as filled boxes in different colors. Numbers show the sizes of intergenic spacers (positive values) and overlapping region between genes (negative values).
Supplementary material 2 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
: Data type: molecular data
Figure 8 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 8 BI tree inferred from MrBayes method based on PCG123R dataset. Numbers separated by slash (/) on node represent posterior probabilities based on PCG123, PCGAA and PCG123R datasets, respectively. The dash (-) represents unrecovered node in BI tree based on the PCG123 or PCGAA dataset.
Supplementary material 1 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
: Data type: molecular data
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.