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712 results for “tick”
Population genetic structure and demographic history of the lone star tick, Amblyomma americanum (Ixodida: Ixodidae): new evidence supporting old records
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No net effect of host density on tick-borne disease hazard due to opposing roles of vector amplification and pathogen dilution
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Data from: Interacting effects of wildlife loss and climate on ticks and tick-borne disease
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Endosymbionts' genomes extracted from tick metagenomes
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Data from: Prevalence and risk factors of Anaplasma infections in Eastern moose (Alces alces americana) and winter ticks (Dermacentor albipictus) in Maine, United States
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Data from: Cascading effects of predator activity on tick-borne disease risk
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Competition Between Strains of Borrelia afzelii in Immature Ixodes ricinus Ticks Is Not Affected by Season
<p>The Excel file titled, "Raw data.xlsx" contains the raw data that was used in the statistical analyses of the article titled, "Competition Between Strains of Borrelia afzelii in Immature Ixodes ricinus Ticks Is Not Affected by Season" that was published in Frontiers in Cellular and Infection Microbiology.</p>
Figures 1-2 from: Novaes RLM, Alves FM, Souza RF, Laurindo RS, Moratelli R (2020) Bats used as hosts by Amblyomma sculptum (Acari: Ixodidae) in Northeastern Brazil and its implications on tick-borne diseases. Zoologia 37: 1-4. https://doi.org/10.3897/zoologia.37.e56795
Figures 1-2 (1) Individual of Myotis lavali (MN 75191) parasitized by an engorged Amblyomma sculptum in the xerophytic caatinga from Northeastern Brazil. Photo: Carlos Cândido. (2) Individual of Noctilio albiventris (MN 79943) parasitized by some sub-adult individuals of hard tick Amblyomma sculptum and soft tick Ornithodoros sp. in the xerophytic caatinga from Northeastern Brazil. Photo: Roberto Leonan M. Novaes.
Data from: Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms
Assessing the genetic variability of the tick Ixodes ricinus - an important vector of pathogens in Europe - is an essential step for setting-up anti-tick control methods. Here, we report the first identification of a set of SNPs isolated from the genome of I. ricinus, carried out by applying a genomic complexity reduction step, followed by pyrosequencing and the use new bioinformatics tools. Almost 1.4 million reads (average length : 528 nt) were generated with a full Roche 454 GS FLX run on two Reduced Representation Libraries of I. ricinus. 321,088 putative SNPs were isolated using the newly developed bioinformatics tool READ2SNPS, which identifies SNPs without requiring a reference genome. Stringent selection criteria were applied in a bioinformatics pipeline to select 1,768 SNPs for the development of specific primers. Among 384 randomly selected SNPs, tested by Fluidigm genotyping technology on 464 individual ticks, 368 SNPs loci (96%) exhibited the presence of the two expected alleles. Hardy-Weinberg equilibrium tests conducted on 6 natural populations of ticks showed that from 26 to 46 of the 384 loci exhibited significant heterozygote deficiencies. The generated SNP resource described here will be useful for a variety of applications such as the assessment of the genetic structure of I. ricinus populations.
Data from: First dating of a recombination event in mammalian tick-borne flaviviruses
The mammalian tick-borne flavivirus group (MTBFG) contains viruses associated with important human and animal diseases such as encephalitis and hemorrhagic fever. In contrast to mosquito-borne flaviviruses where recombination events are frequent, the evolutionary dynamic within the MTBFG was believed to be essentially clonal. This assumption was challenged with the recent report of several homologous recombinations within the Tick-borne encephalitis virus TBEV. We performed a thorough analysis of publicly available genomes in this group and found no compelling evidence for the previously identified recombinations. However, our results show for the first time that demonstrable recombination (i.e., with large statistical support and strong phylogenetic evidences) has occurred in the MTBFG, more specifically within the Louping ill virus lineage. Putative parents, recombinant strains and breakpoints were further tested for statistical significance using phylogenetic methods. We investigated the time of divergence between the recombinant and parental strains in a Bayesian framework. The recombination was estimated to have occurred during a window period of 282 to 76 years before the present. By unravelling the temporal setting of the event, we adduce hypotheses
FIGURE 2 in Relationships of South American marsupials (Didelphimorphia, Microbiotheria and Paucituberculata) and hard ticks (Acari: Ixodidae) with distribution of four species of Ixodes
FIGURE 2. Distribution of Ixodes loricatus. ¤ Symbol indicates unconfirmed or doubtful records.
FIGURE 1 in Relationships of South American marsupials (Didelphimorphia, Microbiotheria and Paucituberculata) and hard ticks (Acari: Ixodidae) with distribution of four species of Ixodes
FIGURE 1. Distribution of Ixodes amarali (¤) and I. venezuelensis (․).
FIGURE 3 in Relationships of South American marsupials (Didelphimorphia, Microbiotheria and Paucituberculata) and hard ticks (Acari: Ixodidae) with distribution of four species of Ixodes
FIGURE 3. Distribution of Ixodes luciae.
FIGURE 43 in Redescription of the numbat tick Ixodes (Sternalixodes) myrmecobii Roberts, 1962 (Acari: Ixodidae) with descriptions of the male and nymph, and new host records
FIGURE 43. Distribution of Ixodes myrmecobii in Australia based on museum and published records.
Fitness of mCherry Reporter Tick-Borne Encephalitis Virus in Tick Experimental Models
<p>Figures and open datasets from the publication about the reporter TBEV in tick experimental models by Kevély et al., 2022 (<a href="https://doi.org/10.3390/v14122673">https://doi.org/10.3390/v14122673</a>)</p>
Supplementary material 1 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Geographic locations where samples were collected
Supplementary material 15 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Characteristics of each of the metagenomes found and their comparison with available genomes
Supplementary material 4 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Pathogens and endosymbionts present in each tick
Supplementary material 16 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Gene quantity analysis by COG clusters in MAGs, available genomes, and C. burnetii
Supplementary material 8 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy at the genus level within the domains of Bacteria and Archaea
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.