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5,061
datasets available to search
ShareScore release 0.9.0
Dataset results
5,061 results for “access”
Transcriptome of 84 garlic accessions
GEO Series GSE186042. Allium sativum. 84 samples. Type: Expression profiling by high throughput sequencing.
DNA accessibility is not the primary determinant of chromatin-mediated gene regulation
GEO Series GSE115693. Saccharomyces cerevisiae; Mus musculus. 98 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
HBx increases chromatin accessibility and ETV4 expression to regulate Dishevelled-2 and promote HCC progression
GEO Series GSE186862. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Ca2+ influx through ORAI1 and ORAI2 channels regulates chromatin accessibility in CD4+ T cells
GEO Series GSE253187. Mus musculus. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA accessibility is not the primary determinant of chromatin-mediated gene regulation (mouse)
GEO Series GSE115691. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin accessibility landscapes of WT (Rag1-/-) and BATF KO (Rag1-/-Batf-/-) ILC3s sorted from small intestine [ATAC-seq]
GEO Series GSE168078. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Notch induces transcription by stimulating release of paused RNA Pol II without increasing chromatin accessibility [PRO-seq]
GEO Series GSE269115. Homo sapiens. 19 samples. Type: Other.
Mitochondrial ATP production promotes T cell differentiation and function by regulating chromatin accessibility [RNAseq1]
GEO Series GSE304270. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Decoding changes in chromatin accessibility mediated by KDM6 histone demethylases [ATAC-seq]
GEO Series GSE223608. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Substained DNA demethylation and discordant chromatin accessibility dynamics define enhancer regulation during neural progenitor cell differentiation [RNAseq]
GEO Series GSE271129. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Substained DNA demethylation and discordant chromatin accessibility dynamics define enhancer regulation during neural progenitor cell differentiation [6base]
GEO Series GSE271401. Homo sapiens. 6 samples. Type: Other.
Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes
GEO Series GSE153289. Triticum aestivum. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Assessing chromatin accessibility in maize with ATAC-seq
GEO Series GSE120491. Zea mays. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SWI/SNF is a gatekeeper of chromatin access at enhancer networks controlling triple-negative breats cancer progression [ATAC-seq]
GEO Series GSE261986. Homo sapiens. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin accessibility profiling of freshly isolated mouse lung cancer LLC- and breast cancer 4T1- derived leptomeningeal metastatic cancer cells from different anatomical locations [ATAC-Seq]
GEO Series GSE278624. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of the DNA accessibility upon multiple histone H1 variants by ATAC-seq
GEO Series GSE99384. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
IT Policies and Standards - Electronic and Information Technology Accessibility
The documents contained in this dataset reflect NASA's comprehensive IT policy in compliance with Federal Government laws and regulations.
Spatial accessibility to emergency care in Sichuan province in China
<p>Some of the inputs in the study.</p>
Stem trichome PARE-Seq (degradome) data from the 20 accessions
<p><strong>PARE-Seq / degradome dataset</strong></p> <p>Obtained from 10µg of total RNA isolated from stem trichomes of cultivated (S. lycopersicum) and wild relatives of tomato (Solanum section Lycopersicon). </p> <p>Degradome sequencing (sequencing of 5' end of uncapped mRNAs --> to find the site of microRNA cleavage).<br> Degradome sequencing is also called PARE-Seq (see German et al., Nature Protocols 2009 4(3):356-62). Here, Vertis Biotech AG used a slightly modified protocol that generates 75nt reads from the 5' uncapped end of the mRNA. </p> <p><strong>Sample description</strong><br> Stem trichomes total RNA from several individual plants of the "20 accessions" (see table of genotypes below). See lab book - Marc Galland lab book #4 (2017): pages 61-69 + 73-75.</p> <p><strong>Protocol used</strong><br> Qiagen RNeasy Plant Mini Kit (Cat No./ID: 74904).<br> DNAse treatment by Vertis. <br> Minimal amount of 10µg of total RNA per sample.</p> <p><strong>Sequencing at Vertis Biotech AG (Germany)</strong><br> See Doc_VB1745_Galland.pdf and Doc_VB1745_2_Galland.pdf together with the two SeqData08.08.2017.pdf and SeqData08.</p> <p>The sequencing run has generated a total of 20 fastq files: </p> <ol> <li>Moneymaker_C32_S3_R1_001.fastqc.gz</li> <li>LA0407_S10_R1_001.fastq.gz</li> <li>LA0716_S29_R1_001.fastq.gz</li> <li>LA1278_S27_R1_001.fastq.gz</li> <li>LA1364_S8_R1_001.fastq.gz</li> <li>LA1401_S5_R1_001.fastq.gz</li> <li>LA1578_S26_R1_001.fastq.gz</li> <li>LA1718_S4_R1_001.fastq.gz</li> <li>LA1777_S7_R1_001.fastq.gz</li> <li>LA1840_S6_R1_001.fastq.gz</li> <li>LA1954_S28_R1_001.fastq.gz</li> <li>LA2133_S9_R1_001.fastq.gz</li> <li>LA2172_S11_R1_001.fastq.gz</li> <li>LA2386_S21_R1_001.fastq.gz</li> <li>LA2695_S20_R1_001.fastq.gz</li> <li>LA4024_S26_R1_001.fastq.gz</li> <li>LA0735_LYC140_S24_R1_001.fastq.gz</li> <li>PI134418_LYC38_S23_R1_001.fastq.gz</li> <li>LYC4_S25_R1_001.fastq.gz</li> <li>PI127826_S22_R1_001.fastq.gz</li> </ol> <p><strong>Table of genotypes used</strong></p> <pre><code class="language-markdown">| accession | species | accession nr | synonym | origin | |------------|--------------------------------|--------------|---------|-------------| | LA2172 | S. arcanum | TR0009 | - | Peru | | LA1401* | S. cheesmaniae f. minor | EA00652 | - | Ecuador | | LA1840 | S. chmielewskii | - | - | unknown | | LA2695 | S. chmielewskii | EA00759 | - | Peru | | LA0407 | S. habrochaites f. glabratum | EA00558 | - | Ecuador | | LA1777 | S. habrochaites f. hirsutum | EA00703 | - | Peru | | PI134418 | S. habrochaites f. glabratum | TR00015 | LYC38 | unknown | | LYC4 | S. habrochaites f. hirsutum | TR00017 | - | unknown | | LA1718 | S. habrochaites f. glabratum | EA00699 | LYC4934 | Peru | | PI127826 | S. habrochaites f. hirsutum | - | - | Peru | | LA1364 | S. huaylasense | TR00030 | - | Peru | | Moneymaker | S. lycopersicum | - | C32 | Netherlands | | LA4024 | S. lycopersicum | TA209 | - | unknown | | LA2133 | S. neorickii/L. parviflorum | EA00729 | - | Peru | | LA0735 | S. neorickii | TR00025 | LYC140 | unknown | | LA0716 | S. pennellii | EA00585 | - | Peru | | LA1278 | S. peruvianum/pimpinellifolium | TR00005 | - | unknown | | LA1954 | S. peruvianum | EA00713 | - | Peru | | LA1578 | S. pimpinellifolium | EA00674 | - | Peru |</code></pre> <p> </p> <p><strong>Reference:</strong></p> <p>German et al., Nature Protocols 2009 4(3):356-62)</p>
graphANNIS benchmark open access corpora
<p>Corpora used in the graphANNIS benchmark which are open access. See LICENSE.txt in each folder for the actual license of each corpus and the original authors.</p> <p><strong>If using one of the corpora please cite the original authors mentioned in the LICENSE.txt!</strong></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.