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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells
GEO Series GSE261189. Homo sapiens. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Ectopic recruitment of the CTCF N-terminal domain with two proximal zinc-finger domains as a tool for 3D genome engineering [CHIP-seq]
GEO Series GSE300307. Homo sapiens. 27 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo genomic binding sites for the Drosophila CTCF Insulator
GEO Series GSE7351. Drosophila melanogaster. 16 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF and Smad signaling proteins and response to DPP
GEO Series GSE68654. Drosophila melanogaster. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer [RRBS]
GEO Series GSE233330. human gammaherpesvirus 4. 8 samples. Type: Methylation profiling by high throughput sequencing.
Expression data from CTCF RNAi experiments in LNCaP cell line
GEO Series GSE125436. Homo sapiens. 14 samples. Type: Expression profiling by array.
Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF [Hi-C]
GEO Series GSE180305. Mus musculus. 40 samples. Type: Other.
The impact of the embryonic DNA methylation program on CTCF-mediated genome regulation
GEO Series GSE246984. Mus musculus. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
O-GlcNAcylation of CTCF regulates 3D chromatin structure [ATAC-seq]
GEO Series GSE255855. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements [HiC]
GEO Series GSE198760. Drosophila melanogaster. 6 samples. Type: Other.
Tcf1-CTCF cooperativity shapes genomic architecture to promote CD8+ T cell homeostasis [Hi-C]
GEO Series GSE179773. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells [ATAC-seq]
GEO Series GSE243709. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [ChIP-seq]
GEO Series GSE181383. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenomic analysis of Alzheimer's disease brains reveals diminished CTCF binding on genes involved in synaptic organization
GEO Series GSE242918. . 0 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
Dynamic regulation of stress-responsive non-genomic CTCF complexes
GEO Series GSE139886. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.
GEO Series GSE207058. Mus musculus; Homo sapiens. 140 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation [ChIP-seq]
GEO Series GSE169558. Mus musculus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cell type specificity of chromatin organization mediated by CTCF and cohesin
GEO Series GSE26507. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [UMI-4C]
GEO Series GSE156098. Danio rerio. 36 samples. Type: Other.
CTCF binding landscape is established by the epigenetic status of the nucleosome, well-positioned relative to CTCF motif orientation
GEO Series GSE277826. Mus musculus. 30 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.