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738 results for “Microsatellite”
Supplementary material 1 from: Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus). Comparative Cytogenetics 11(3): 435-462. https://doi.org/10.3897/compcytogen.v11i3.11739
Supplementary Table 1 : Data type: Table
Supplementary material 3 from: Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus). Comparative Cytogenetics 11(3): 435-462. https://doi.org/10.3897/compcytogen.v11i3.11739
Supplementary Table 3 : Data type: Table
Supplementary material 7 from: Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus). Comparative Cytogenetics 11(3): 435-462. https://doi.org/10.3897/compcytogen.v11i3.11739
Supplementary Figure 2 : Data type: Image
Supplementary material 2 from: Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus). Comparative Cytogenetics 11(3): 435-462. https://doi.org/10.3897/compcytogen.v11i3.11739
Supplementary Table 2 : Data type: Table
Supplementary material 6 from: Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus). Comparative Cytogenetics 11(3): 435-462. https://doi.org/10.3897/compcytogen.v11i3.11739
Supplementary Figure 1 : Data type: Image
Microsatellite genotype data for captive and wild Arabian leopards
<p>Genetic diversity underpins evolutionary potential that is essential for the long-term viability of wildlife populations. Captive populations harbour genetic diversity potentially lost in the wild, which could be valuable for release programs and genetic rescue. The Critically Endangered Arabian leopard (<em>Panthera pardus nimr</em>) has disappeared from most of its former range across the Arabian Peninsula, with fewer than 120 individuals left in the wild, and an additional 64 leopards in captivity. We (i) examine genetic diversity in the wild and captive populations to identify global patterns of genetic diversity and structure; (ii) estimate the size of the remaining leopard population across the Dhofar mountains of Oman using spatially explicit capture-recapture models on DNA and camera trap data, and (iii) explore the impact of genetic rescue using three complementary computer modelling approaches. We estimated a population size of 51 (95% CI: 32–79) in the Dhofar mountains and found that 8 out of 25 microsatellite alleles present in eight loci in captive leopards were undetected in the wild. This includes two alleles present only in captive founders known to have been wild-sourced from Yemen, which suggests that this captive population represents an important source for genetic rescue. We then assessed the benefits of reintroducing novel genetic diversity into the wild population, as well as the risks of elevating the genetic load through the release of captive-bred individuals. Simulations indicate that genetic rescue can improve the long-term viability of the wild population by reducing its genetic load and realised load. The model also suggests that the genetic load has been partly purged in the captive population, potentially making it a valuable source population for genetic rescue. However, the greater loss of its genetic diversity could exacerbate genomic erosion of the wild population during a rescue program, and these risks and benefits should be carefully evaluated. The next step in the recovery plan of the Arabian leopard is to empirically validate these conclusions, implement and monitor a genomics-informed management plan, and optimise a strategy for genetic rescue as a tool to recover Arabia's last big cat.</p>
Fig. 3 in Testing The Microsatellites-Pcr Markers For Genetic Diversity Research Of Alien Ponto-Caspian Amphipod Pontogammarus Robustoides G. O. Sars, 1894
Fig. 3. Microsatellites amplification of Pontogammarus robustoides from Pļaviņas Reservoir used primer Gapu-17.
FIGURE 2 in Development of microsatellite loci and population genetics in the bumblebee catfish species Pseudopimelodus atricaudus and Pseudopimelodus magnus (Siluriformes: Pseudopimelodidae)
FIGURE 2 | Population structure suggested by STRUCTURE (A-C) and the Discriminant Analysis of the Principal Components (D, E) for Pseudopimelodus magnus (A, B, D), and Pseudopimelodus atricaudus (A, C, E). S1: sector 1 of the middle Cauca River; S4, S5, and S8: sectors 4, 5 and 8 of the lower Cauca River, respectively.
FIGURE 1 in Microsatellite loci development for three catfish species from northwestern South America
FIGURE 1 | Frequency of identified microsatellite loci and potentially amplifiable loci (PAL) obtained from 454 FLX sequencing for Ageneiosus pardalis, Pimelodus grosskopfii, and Sorubim cuspicaudus.
Fig. 1 in Genetic diversity and population structure of endangered Neofinetia falcata (Orchidaceae) in South Korea based on microsatellite analysis
Fig. 1. Geographic distribution of N. falcata populations. Abbreviations are shown in Table 1. Pie charts represent assignment probability of belonging to each K = 2 clusters identified by STRUCTURE based on microsatellite allele frequencies, with probability values normalized using CLUMPP.
Figure 3 from: Li Y, Lin L-S, Gao T-X (2018) Genetic signatures of polymorphic microsatellite loci in the Ambiguous silver pomfret, Pampus argenteus (Teleostei, Stromateidae). ZooKeys 810: 139-151. https://doi.org/10.3897/zookeys.805.25602
Figure 3 3D-FCA showing relationships among six populations of P.argenteus based on seven microsatellite loci. Abbreviations: SO: Sonmiani Bay, OR: Ormara, PS: Pasni, KW: Kuwait, TW: Taiwan, XM: Xiamen.
Figure 4 from: Li Y, Lin L-S, Gao T-X (2018) Genetic signatures of polymorphic microsatellite loci in the Ambiguous silver pomfret, Pampus argenteus (Teleostei, Stromateidae). ZooKeys 810: 139-151. https://doi.org/10.3897/zookeys.805.25602
Figure 4 Results of the STRUCTURE analysis from seven microsatellite loci in P.argenteus (K = 2). Vertical lines are proportional to the probability of individual membership in the simulated cluster. Abbreviations: SO: Sonmiani Bay, OR: Ormara, PS: Pasni, KW: Kuwait, TW: Taiwan, XM: Xiamen.
Figure 2 from: Li Y, Lin L-S, Gao T-X (2018) Genetic signatures of polymorphic microsatellite loci in the Ambiguous silver pomfret, Pampus argenteus (Teleostei, Stromateidae). ZooKeys 810: 139-151. https://doi.org/10.3897/zookeys.805.25602
Figure 2 The UPGMA tree based on (δμ)2 genetic distance of six P.argenteus populations. Abbreviations: SO: Sonmiani Bay, OR: Ormara, PS: Pasni, KW: Kuwait, TW: Taiwan, XM: Xiamen.
Figure 2 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 2 Total number of shared haplotypes between populations of Usnea subfloridana in the south-eastern (SE), the western (W) and northern (N) regions of Estonia; the thickness of lines reflects the number of shared haplotypes between populations.
Figure 3 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 3 Usnea subfloridana multilocus genotypes in the principal component analysis (PCA) ordination plot of the first and second axes. Samples are grouped according to the presence of lichen substance: samples containing thamnolic (square) or squamatic acid (circle).
Figure 1 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 1 Distribution map of Usnea subfloridana in Estonia (light grey squares) and study populations (black circles) on Hiiumaa island in the western region (W), in the south-eastern region (SE) and in the northern region of Estonia; the map of Scandinavia was taken from free map resource http://d-maps.com/carte.php?num_car=5977&lang=en.
Figure 6 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 6 Alleles of Usnea subfloridana and explanatory variables mean annual air temperature ('Temp') and geographical longitude of populations ('Long') in the bi-plot of the redundancy analysis (RDA) of the first and second axes. Labels of alleles prefixed by '8' or '9' indicate that these alleles belong to loci Us08 or Us09, respectively; for example, 8201 means that allele 201 is from Us08
Figure 4 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 4 Usnea subfloridana multilocus genotypes (Us02, Us03, Us04, Us05, Us06, Us08, Us09) and explanatory variables mean annual air temperature ('Temp') and the presence of thamnolic acid ('Tham') in a lichen sample in the bi-plot of the redundancy analysis (RDA) of the first and second axes.
Figure 5 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 5 Sample populations of Usnea subfloridana and explanatory variables mean annual air temperature ('Temp') and geographical longitude of populations ('Long') in the bi-plot of the redundancy analysis (RDA) of the first and second axes. The shape of symbols indicates the geographical location of studied populations (square – south-eastern region of mainland, circle - western island and diamond – north-eastern region) and the size of symbols indicates the number of different alleles found in the studied populations.
Figure 3. K in Microsatellite based genetic diversity of Mediterranean fruit fly (Ceratitis capitata, Diptera: Tephritidae) populations from Southwest Turkey
Figure 3. K = 4 clustering assignment depending on the Bayesian method under an admixture model obtained by Structure software. Individuals are represented by a vertical line and each color indicates a different cluster. 1: Muğla; 2: Aydın; 3: Antalya; 4: İzmir; 5: Adana; 6: Yalova; 7: Mersin.
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