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1,840 results for “Representative”
FIGURE 1 in New representative of the family Panorpodidae (Insecta, Mecoptera) from Eocene Baltic Amber with a key to fossil species of genus Panorpodes
FIGURE 1. Photograph of Panorpodes gedanensis sp. n. – holotype no. 1193-2 (photo H.W. Hoffeins).
Model and Data for the T&C-CROP Validation Paper: T&C-CROP: Representing mechanistic crop growth with a terrestrial biosphere model (T&C,v1.5): Model formulation and validation.
<p>Here included is the code used to run T&C-CROP as used for the GMD paper submission alongside with the necessary weather data and raw field data used as part of the validation exercise. </p> <p> </p>
Quantification of gamma radiation exposure and radon/thoron exhalation rates in representative building materials in Ireland
<p>Data, models, mapsa nd publication produced during the postdoctoral fellowship: EPSPD/2022/141 </p>
Gazetteer_HTO: A Knowledge Graph for representing the Gazetteers of Scotland (1803-1901) following Heritage Textual Ontology
<p>This Knowlege Graph represents the information of the "Gazeteers of Scotland<strong>"</strong> (years: 1803 - 1901) collection in RDF (ttl format). This collection comprises twenty volumes of the most popular descriptive gazetteers of Scotland in the 19th century. Principal places in Scotland, including towns, counties, castles, glens, antiquities and parishes, are listed alphabetically. Each entry includes detailed historical and geographical information about each place. The raw dataset is provided by the NLS in this <a href="https://data.nls.uk/data/digitised-collections/gazetteers-of-scotland/">link</a>. As other NLS data collections, they are originally provided using two XMLs schemas: METS for descriptive, structural, technical and administrative metadata (Title, Author, Publisher, etc); and ALTO for encoding the OCR text of a page.</p> <p>In this work, we have extracted the information from METS and ALTO XMLS using <a href="https://github.com/francesNLP/defoe">defoe</a> tool. The KG uses the <a href="https://w3id.org/hto">HTO</a> to represent the information extracted. Furthermore, during the information extraction phase, we have employed several techniques to mitigate two common OCR errors: long-S and the line-break hyphenation.</p>
Chapbooks_HTO: A Knowledge Graph for representing the "Chapbooks Printed In Scotland" (1671 - 1893) following the Heritage Textual Ontology
<p>This Knowlege Graph represents the information of the "<strong>Chapbooks Printed In Scotland"</strong> (years: 1671 - 1893) collection in RDF (ttl format). This dataset comprises more than 3,000 chapbooks printed in Scotland from the 17th to 19th century. They form part of the Lauriston Castle Collection, which was bequeathed to the Library in 1926. It includes some 500 chapbook volumes containing around 5,500 individual items, more than half of which were printed in Scotland. The raw dataset is provided by the NLS in this <a href="https://data.nls.uk/data/digitised-collections/chapbooks-printed-in-scotland/">link</a>. As other NLS data collections, they are originally provided using two XMLs schemas: METS for descriptive, structural, technical and administrative metadata (Title, Author, Publisher, etc); and ALTO for encoding the OCR text of a page.</p> <p> The KG uses the <a href="https://w3id.org/hto">HTO</a> to represent the information extracted. Furthermore, during the information extraction phase, we have employed several techniques to mitigate two common OCR errors: long-S and the line-break hyphenation.</p>
Figure 1 in A primitive representative of the Parabathynellidae (Bathynellacea, Syncarida) from the Yilgarn Craton of Western Australia
Figure 1. Billibathynella humphreysi sp. nov., holotype ("). Scale bar: 1 mm.
Fig. 37 in Erichsonius (Sectophilonthus) jelineki sp. nov., the first representative of the genus from the Seychelles (Coleoptera: Staphylinidae: Staphylininae)
Fig. 37. Mount Trois Frères. Arrow indicates the type locality of Erichsonius jelineki sp. nov.
Fig. 19. Representative Nimbadon lavarackorum occipital regions. A in First Crania and Assessment of Species Boundaries in Nimbadon (Marsupialia: Diprotodontidae) from the Middle Miocene of Australia
Fig. 19. Representative Nimbadon lavarackorum occipital regions. A, QM F31377; B, QM F31541.
FIG. 5. Electron micrograph ofa T. aquaticus rod, showing presence ofslime. Bar represents I J in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 5. Electron micrograph ofa T. aquaticus rod, showing presence ofslime. Bar represents I J,um.
Dataset for "Interpreting eddy covariance data from heterogeneous Siberian tundra: land cover-specific methane fluxes and spatial representativeness"
<p>The micrometeorological dataset used in</p> <p>Tuovinen, J.-P., Aurela, M., Hatakka, J., Räsänen, A., Virtanen, T., Mikola, J., Ivakhov, V., Kondratyev, V. and Laurila, T.: Interpreting eddy covariance data from heterogeneous Siberian tundra: land cover-specific methane fluxes and spatial representativeness. <em>Biogeosciences Discussions</em>, https://doi.org/10.5194/bg-2018-155, 2018 (accepted for publication in <em>Biogeosciences</em>).</p> <p> </p>
Genome sequence and silkomics of the spindle ermine moth, Yponomeuta cagnagella, representing the early diverging lineage of the ditrysian Lepidoptera
<p>Many lepidopteran caterpillars produce silk, cocoons, feeding tubes, or nests for protection from predators and parasites. Yet, the number of lepidopteran species whose silk composition has been studied in detail is very small, because the genes encoding the major structural silk proteins tend to be large and repetitive, making their assembly and sequence analysis difficult. Here we have analyzed the silk of <em>Yponomeuta cagnagella</em>, which represents one of the early diverging lineages of the ditrysian Lepidoptera thus improving the coverage of the order. To obtain a comprehensive list of the <em>Y. cagnagella</em> silk genes, we sequenced, assembled, and annotated the draft genome using Oxford Nanopore and Illumina technologies. The 626 Mb assembly with N50 of 96.5 kb contained 96.9% insect orthologs recovered by BUSCO and 30,003 predicted gene models. We then used a silk-gland transcriptome and a silk proteome to identify major silk components and verified the tissue specificity of the expression of individual genes. </p>
Models representative of the AGN spectral shapes (preliminary)
<p>The Table gives the Models obtained that are representative of the AGN spectral shapes.</p>
Knockout mice represent an important tool for the multisystemic study of human monogenic heart disease
<p>Supplementary data to support a manuscript entitled "Knockout mice represent an important tool for the multisystemic study of human monogenic heart disease"</p>
Data and code for "Representing storylines with causal networks to support decision making: framework and example"
<p>Data and code for the paper "Representing storylines with causal networks to support decision making: framework and example", along with the Shiny webapp code accompanying the paper. The paper has been submitted to the journal of Climate Risk Management and is currently under review.</p>
Figure 8. PCA and MANOVA scatterplot representing S. i in Taxonomic status of Tamarinus imperator subgrisescens (Lönnberg, 1940) (Cebidae, Callitrichinae)
Figure 8. PCA and MANOVA scatterplot representing S. i. imperator (green) and S. i. subgrisescens from Peru (pink) and Brazilian Amazon (purple).
An abundant sea anemone from the Carboniferous Mazon Creek Lagerstӓtte, U.S.A.: Representative specimens examined
<p>Sea anemones (Actiniaria) are among the rarest of recognized fossil organisms, even rarer than jellyfish. Here we demonstrate that the most abundant fossil in the Pennsylvanian Mazon Creek Lagerstätte of Illinois, <em>Essexella</em> <em>asherae,</em> is an infaunal or semi-infaunal anemone. <em>Essexella</em> is redescribed based on a taphonomic analysis of thousands of specimens, as well as associated medusae and trace fossils. Specimens of <em>Essexella</em> (also known as the "blobs") were long believed to be medusae, but we reassign <em>Essexella</em> to the order Actiniaria and reinterpret the putative jellyfish <em>Reticulomedusa</em> as the pedal or oral disc of <em>Essexella</em>. We also implicate <em>Essexella</em> as a producer of <em>Conostichus</em>, a widespread plug-shaped trace fossil that occurs in coeval strata in the same region. Radiate structures comparable to the bases of <em>Conostichus</em> and the ichnofossil <em>Bergaueria</em>, as well as the pedal discs of modern anemones, characterize <em>Reticulomedusa</em>. Bona fide medusae are present in the Mazon Creek biota, and include <em>Anthracomedusa</em> <em>turnbulli</em> and <em>Octomedusa</em> <em>pieckorum</em>, whereas the soft-bodied fossil <em>Lascoa</em> <em>mesostaurata</em> is referred to Problematica.</p>
Fig. 1. A in A comparative analysis of the Baltic and Rovno amber arthropod faunas: representative samples
Fig. 1. A piece of Rovno amber (UA-662) with more than 50 inclusions.
Datasets for: PARNAS: Objectively selecting the most representative taxa on a phylogeny
<p>The use of next-generation sequencing technology has enabled phylogenetic studies with hundreds of thousands of taxa. Such large-scale phylogenies have become a critical component in genomic epidemiology in pathogens such as SARS-CoV-2 and influenza A virus. However, detailed phenotypic characterization of pathogens or generating a computationally tractable dataset for detailed phylogenetic analyses requires objective subsampling of taxa. To address this need, we propose PARNAS, an objective and flexible algorithm to sample and select taxa that best represent observed diversity by solving a generalized k-medoids problem on a phylogenetic tree. PARNAS solves this problem efficiently and exactly by novel optimizations and adapting algorithms from operations research. For more nuanced selections, taxa can be weighted with metadata or genetic sequence parameters, and the pool of potential representatives can be user-constrained. Motivated by influenza A virus genomic surveillance and vaccine design, PARNAS can be applied to identify representative taxa that optimally cover the diversity in a phylogeny within a specified distance radius. We demonstrated that PARNAS is more efficient and flexible than existing approaches. To demonstrate its utility, we applied PARNAS to (i) quantify SARS-CoV-2 genetic diversity over time, (ii) select representative influenza A virus in swine genes derived from over 5 years of genomic surveillance data, and (iii) identify gaps in H3N2 human influenza A virus vaccine coverage. We suggest that our method, through the objective selection of representatives in a phylogeny, provides criteria for quantifying genetic diversity that has application in the the rational design of multivalent vaccines and genomic epidemiology. PARNAS is available at <a href="https://github.com/flu-crew/parnas">https://github.com/flu-crew/parnas</a>.</p>
Data set from a representative survey on artificial intelligence in Germany
<p>Data on the perception of medical artificial intelligence in Germany is currently lacking. Two online surveys were launched in Germany in 2021 to assess the knowledge and perception of artificial intelligence in general and in medicine, including the management of data in medicine. A total of 1,001 and 1,000 adults participated in the surveys. The data collected and the questionnaires will be published.</p>
A dark side of conservation biology: protected areas fail in representing subterranean biodiversity. Databases.
<p>We obtained distribution data for leiodids by digitizing the information provided by Fresneda and Salgado (2017). This information was updated and expanded with additional data from several sampling campaigns (unpublished data). For subterranean spiders, we included the entirety of the Alps range extending from France in the east westward through Switzerland, Italy, Liechtenstein, Austria, Germany, and Slovenia, by integrating available data in Global Biodiversity Information Facility (GBIF), Spider of Europe), Araneae.it and other literature sources.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.