Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,773
datasets available to search
ShareScore release 0.9.0
Dataset results
1,773 results for “Supplementary data,”
Supplementary data on learning about German farmers' willingness to cooperate from public goods games and expert predictions
<p>Supplemental files on learning about German farmers' willingness to cooperate from public goods games and expert predictions. </p>
AMMPER supplementary data
<p>Supplementary datasets accompanying the manuscript "Agent-based Model for Microbial Populations Exposed to Radiation (AMMPER) simulates yeast growth for deep-space experiments." These datasets represent data generated by several simulation runs of the AMMPER model, as well as the experimental data used for comparison in the manuscript.</p>
Supplementary data 'Mitochondrial genome sequence of the protist Ancyromonas sigmoides Kent, 1881 (Ancyromonadida) from the Sugluk Inlet, Hudson Strait, Nunavik, Québec'
<p>Fasta file with the transcripts obtained from RNAseq sequencing of Ancryomonas sigmoides (kmer 35) and file with datamining results.</p><p>Fasta file of the transcript matching the cox1 gene.</p><p>Scaffolds of the kmer 85 assembly of the genomic data of Ancryomonas sigmoides.</p><p>Databse used for datamining (fasta file)</p>
Supplementary materials for "Putting the F into FBD analysis: tree constraints or morphological data ?"
<p>This dataset contains the R code, simulated datasets and configuration files used to run the analyses presented in the manuscript "Putting the F into FBD analysis: tree constraints or morphological data ?".</p>
Supplementary Data for BRCA-CN
<p>Test data to enable the verification and reproduction of the experiments described in this manuscript when combined with open-source resources.</p>
Data, code and supplementary plots for "A hierarchical spline model for correcting and hindcasting temperature data"
<p>Data, code and supplementary plots for the paper "A hierarchical spline model for correcting and hindcasting temperature data". Please see README.txt for detailed description of the files and relevant instructions.</p>
Supplementary Data for Manuscript 'Observing impacts on luminescence depth profile evolutions from surface altered quartzite using OSL laser scanning and controlled light exposed rock sampling techniques'
<p>The attached file contains supplementary documents offered in the Quaternary Geochronology manuscript 'Observing<strong> </strong>impacts on luminescence depth profile evolutions from surface altered quartzite using OSL laser scanning and controlled light exposed rock sampling techniques' for the LED2023 special issue. </p>
Supplementary data supporting "3D diffusion of water in melt inclusion-bearing olivine phenocrysts"
<p>Supplementary_DataS1</p><p>Secondary Ion Mass Spectrometry (SIMS) data of water concentrations in olivine crystals from the 1977 Seguam eruption used in this study. Electron probe microanalyser (EPMA) data of major elements and crystal orientations from electron backscatter diffraction (EBSD) are also included.</p><p>Supplementary_DataS2</p><p>Model inputs and outputs for the Monte Carlo diffusion modelling used in this study for water loss from a melt inclusion during magma decompression. Spreadsheet includes water loss estimated by 3D, 2D and 1D numerical models in addition to the anisotropic analytical solution. It also includes the inverted decompression rates from the 2D, 1D and analytical models.</p>
Lost in translation: A historical-comparative reconstruction of Proto-Khoe-Kwadi based on archival data - Supplementary Material
<p>Supplementary Materials 1-4 for the following article: </p><p>Fehn, Anne-Maria & Jorge Rocha. 2023. Lost in translation: A historical-comparative reconstruction of Proto-Khoe-Kwadi based on archival data. Diachronica. https://doi.org/10.1075/dia.23022.feh.</p>
Supplementary data for "The mechanistic functional landscape of Retinitis Pigmentosa: an ML-driven approach to drug repurposing"
<p>Supplementary data for "The mechanistic functional landscape of Retinitis Pigmentosa: an ML-driven approach to drug repurposing"</p><p> </p><p>version: 10.5281/zenodo.10203479</p><ul><li>added missing file: "drug_actions_withSimplAction.csv"</li></ul>
Supplementary Data to Pontesilli et al 2023 manuscript
<p>Supplementary Data for the manuscript entitled "Magma differentiation in dynamic mush domains from the perspective of multivariate statistics: open- vs closed-system evolution" and submitted for review on Geochemistry, Geophysics, Geosystems. Matrix glass major and trace element compositions, including original variables, analytical precision and accuracy based on secondary standards, as well as principal component scores, data clustering for each point analysis, partition coefficient values from literature including the complete reference list and results of differentiation modeling. Upload of the dataset on Zenodo under a CC4 Public License on restricted access on 06-12-2023, the dataset will be made publicly available upon eventual acceptance and publication.</p>
Supplementary digital data for "Widespread contamination of soils and vegetation with Current Use Pesticide residues along altitudinal gradients in a European Alpine valley"
<p>Supplementary digital data for the publication:</p> <p>Widespread contamination of soils and vegetation with Current Use Pesticide residues along altitudinal gradients in a European Alpine valley</p> <p>Data that was no publicly available but is used for Figure 1 - 3 in the manuscript is provided in this repository in addition to the raw data describing the occurrence in plant and soil matrices throughout the Vinschgau valley along the altitudinal transects.</p> <p> </p>
Supplementary data for "Structural, biochemical, and computational characterization of sulfonamides as bimetallic peptidase inhibitors"
<p>Supplementary data for "Structural, biochemical, and computational characterization of sulfonamides as bimetallic peptidase inhibitors"</p> <p>Coordinates, schemes, NCI density visualization in VMD, and PyMOL sessions for the Figures in the publication are provided.</p>
Supplementary Material: The Importance of Optical Wavelength Data on Atmospheric Retrievals of Exoplanet Transmission Spectra
<p>Supplementary material for "The Importance of Optical Wavelength Data on Atmospheric Retrievals of Exoplanet Transmission Spectra" DOI: <a href="https://ui.adsabs.harvard.edu/link_gateway/2024arXiv240307801F/doi:10.48550/arXiv.2403.07801" target="_blank" rel="noreferrer noopener">10.48550/arXiv.2403.07801</a></p> <p>Contents of this record:</p> <ul> <li>The retrieved atmospheric parameters for the population (see supplementary_material.pdf).</li> <li>The retrieval statistics per planet for the wavelength ranges 0.3-4.5, 0.6-4.5, and 1.1-4.5 microns (see supplementary_material.pdf).</li> <li>Planet specific retrieved spectra for the wavelength ranges 0.3-4.5, 0.6-4.5, and 1.1-4.5 microns.</li> <li>Retrieved parameter cornerplots per planet for the wavelength ranges 0.3-4.5, 0.6-4.5, and 1.1-4.5 microns.</li> </ul> <p>(NOTE: the retrieval model and priors for the results displayed in this record are specified in tables 2 and 3 of the paper.)</p>
Supplementary data for: simultaneous species detection and discovery with environmental DNA metabarcoding: a freshwater mollusk case study
<p>Environmental DNA (eDNA) sampling is a powerful tool for rapidly characterizing biodiversity patterns for specious, cryptic taxa with incomplete taxonomies. One such group that are also of high conservation concern are North American freshwater gastropods. In particular, springsnails of the genus <em>Pyrgulopsis</em> (Family: Hydrobiidae) are prevalent throughout the western United States where >140 species have been described. Many of the described species are narrow endemics known from a single spring or locality and it is believed that there are likely many additional species which have yet to be described. The distribution of these species across the landscape is of interest because habitat loss and degradation, climate change, groundwater mining, and pollution have resulted in springsnail imperilment rates as high as 92%. Determining distributions with conventional sampling methods is limited by the fact that these snails are often <5 mm in length with few distinguishing morphological characters, making them both difficult to detect and to identify. In order to facilitate detection of <em>Pyrgulopsis</em> we developed an eDNA metabarcoding protocol that is both inexpensive and capable of rapid, accurate detection of all known <em>Pyrgulopsis</em> species. When compared with conventional collection techniques, our pipeline consistently resulted in detection at sites previously known to contain <em>Pyrgulopsis </em>springsnails and at a cost per site that is likely to be substantially less than the conventional sampling and individual barcoding that has been done historically. Additionally, because our method uses eDNA extracted from filtered water it is non-destructive and suitable for the detection of endangered species where "no take" restrictions may be in effect. This effort represents both a tool which is immediately applicable to a group of high conservation concern across western North America and a case study in the broader application of eDNA sampling for landscape assessments of cryptic taxa of conservation concern.</p>
Supplementary material for the publication: Deep Learning of Crystalline Defects from TEM images: A Solution for the Problem of "Never Enough Training Data"
Open the record for dataset details and reuse information.
Supplementary data for: Encyclopaedia of family A DNA polymerases localized in organelles: Evolutionary contribution of bacteria including the proto-mitochondrion
<p><span>DNA polymerases (DNAPs) synthesize DNA from deoxyribonucleotides in a semi-conservative manner and serve as the core of DNA replication and repair machinery. In eukaryotic cells, there are two genome-containing organelles, mitochondria and plastids, that were derived from an α-proteobacterium and a cyanobacterium, respectively. Except for rare cases of genome-lacking mitochondria and plastids, both organelles must be served by nucleus-encoded DNAPs that localize and work in them to maintain their genomes. The evolution of organellar DNAPs has yet to be fully understood because of two unsettled issues. First, the diversity of organellar DNAPs has not been elucidated in the full spectrum of eukaryotes. Second, it is unclear when the DNAPs that were used originally in the endosymbiotic bacteria giving rise to mitochondria and plastids were discarded, as the organellar DNAPs known to date show no phylogenetic affinity to those of the extant α-proteobacteria or cyanobacteria. </span><span>In this study, we identified from diverse eukaryotes 134</span> <span>family A DNAP sequences, which were classified into 10 novel types, and explored their evolutionary origins. The subcellular localizations of selected DNAPs were further examined experimentally. The results presented here suggest that the diversity of organellar DNAPs has been shaped by multiple transfers of the Pol</span><span>I</span><span> gene from phylogenetically broad bacteria, and their occurrence in eukaryotes was additionally impacted by secondary plastid endosymbioses. Finally, we propose that the last eukaryotic common ancestor may have possessed two mitochondrial DNAPs, POP and a candidate of the direct descendant of the proto-mitochondrial DNAP, rdxPolA, identified in this study.</span></p>
Supplementary data for "Increasing risks of extreme salt intrusion events across European estuaries in a warming climate", published in Communications Earth & Environment
<p>This data repository contains python scripts and post-processed climate model and salt intrusion length data to reproduce figures in the paper below.</p> <p>====================</p> <p>Title: Increasing risks of extreme salt intrusion events across European estuaries in a warming climate (<a href="https://www.nature.com/articles/s43247-024-01225-w">Link to the full paper</a>)</p> <p>Author: Jiyong Lee, Bouke Biemond, Huib de Swart, and Henk A. Dijkstra</p> <p>Journal: Communications Earth & Environment</p> <p>Year: 2024</p> <p>Publisher: Nature</p> <p>====================</p>
Supplementary material data for: Unstable environmental conditions constrain the fine-tune between opsin sensitivity and underwater light in an Amazon forest stream fish
<p>Visual adaptations can stem from variations in amino acid composition, chromophore utilization, and differential opsin gene expression levels, enabling individuals to adjust their light sensitivity to environmental lighting conditions. In stable environments, adaptations often involve amino acid substitutions, whereas in unstable conditions, differential gene expression may be a more relevant mechanism. Amazon forest streams present diverse underwater lighting conditions and experience short-term water colour fluctuations. In these environments, it is less likely for genetic and amino acid sequences to undergo modifications that tailor opsin proteins to the prevailing lighting conditions, particularly in species having several copies of the same gene. The sailfin tetra, <em>Crenuchus spilurus</em>, inhabits black and clear water Amazon forest streams. The long wavelength sensitivity (LWS) is an important component for foraging and courtship. Here, we investigated LWS opsin genes in the <em>sailfin tetra</em>. Three copies of LWS1 and two copies of LWS2 genes were found. The maximum absorbance wavelength (λmax) estimated from the amino acid sequences of LWS1 genes exhibited variation among the different copies. In contrast, the copies of LWS2 genes showed identical expected λmax values. Although the amino acid positions affecting λmax varied among LWS genes, they remained consistent among populations living in different water colours. The relative expression levels of LWS genes differed between gene copies. While not formally tested, our results suggest that in fluctuating environments, visual adaptations may primarily stem from alterations in gene expression profiles and/or chromophore usage rather than precise genetic tuning of protein light sensitivity to environmental lighting conditions.</p>
Supplementary data for Inter-provenance variability and phenotypic plasticity of wood and leaf traits related to hydraulic safety and efficiency in seven European beech (Fagus sylvatica L.) provenances differing in yield
<p>Dataset and supplementary file for <strong>Inter-provenance variability and phenotypic plasticity of wood and leaf traits related to hydraulic safety and efficiency in seven European beech (<em>Fagus sylvatica</em> L.) provenances differing in yield </strong>paper.</p> <p>The ANFS_data file includes individual level measurements of xylem safety and efficiency traits, leaf traits and growth among 7 provenances planted at two common garden sites in Germany and Slovakia. More details related to the methodology might be found in the published paper by Kurjak et al. 2024.</p> <p>The ANFS_supplementary file includes the test for differences in distance to tip between sites and provenances, based on the branch diameter-branch length scaling.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.