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Migratory cavity nesters (Ficedula hypoleuca) incur fitness costs from ecological traps
<p><span>When selecting a habitat for breeding and offspring rearing, it is optimal for organisms to select a stable habitat with high amounts of quality resources. However, organisms may inadvertently select a habitat for breeding that would initially appear preferential and healthy, but may in reality be detrimental to parent and/or offspring fitness. Such ecological traps may even be the result of human habitat modification and conservation efforts. In this study, we tested whether migratory European pied flycatcher (</span>Ficedula hypoleuca) offspring cavity-nesting in patches of forest affected by outbreaks of the great web-spinning sawfly (Acantholyda posticalis<span>) incurred fitness detriments characteristic of ecological traps when compared to flycatchers that nested in patches of unaffected forest. Outbreaking sawfly larvae overconsume Scots pine (Pinus sylvestris) needles and substrate, which decreases resource availability directly and indirectly–through cascading effects–for birds inhabiting the forest. In installing nest boxes to attract breeding pairs and potentially combat the outbreak, we found that flycatchers inhabiting areas of sawfly outbreaks had similar clutch sizes to pairs breeding in healthy forest patches. Contrarily, the fledgling number and body condition were significantly lower for those nesting in the damaged forests. Though larvae serve as the primary food source for nestlings, the forest patches damaged by sawflies also had lower larval biomass from rapid resource decline due to overconsumption. In provisioning nest boxes for migrating flycatcher pairs in forest patches that were subsequently impacted by a pest insect outbreak, an ecological trap arose for those pairs choosing to nest in what appeared to be an unaffected forest at first. Given the inability of breeding pairs to distinguish habitat quality on initial inspection, we suggest that nest boxes be used with caution in areas with unstable habitat conditions when attracting migratory birds given the trends of their declining global numbers.</span></p>
Data from: Leukocyte profiles are associated with longevity and survival, but not migratory effort: a comparative analysis of shorebirds
1. Assessment of leukocyte profiles has become an increasingly popular tool in the fields of ecology and ecophysiology. The ratio of heterophils to lymphocytes (H/L ratio) is of special utility, as it reflects physiological adaptation of an organism to cope either with an infection through injury (via heterophils) or a communicable disease (via lymphocytes). Thus, elevated H/L ratios may constitute an adaptation to risky environments (i.e. associated with high risk of injury). While intra-population variation in avian H/L ratio has been extensively studied, we are aware of no studies that linked this trait to life-history components at the inter-specific level. 2. We measured H/L ratio in over 400 shorebirds from 19 species during their autumn migration through Central Europe. Phylogenetically informed comparative methods were used to test whether H/L ratio was related to: i) annual survival and lifespan; ii) migratory effort, as measured with total migration distance and migratory energy reserves; and iii) confounding variables such as body size or breeding latitude. 3. A relatively strong phylogenetic signal and spatial phylogenetic autocorrelation indicated that most diversification in shorebird H/L ratios occurred relatively early in radiation of this group. 4. Comparative analysis gave strong support for the negative associations of H/L ratio with residual lifespan and annual survival. In contrast, we found no support for the effect of migratory behaviour on H/L ratios, suggesting that leukocyte profiles in shorebirds may not constitute an important physiological adaptation for long-distance migration. 5. Our study provided the first comparative evidence for a link between H/L ratios and important life-history traits in birds. Strong negative associations with annual survival and residual lifespan indicate that leukocyte profiles may form an adaptive basis for life-history strategies in birds.
Data from: Nocturnal departure timing in songbirds facing distinct migratory challenges
1. Most migratory songbirds travel between their breeding areas and wintering grounds through a series of nocturnal flights. The timing of their departures defines the potential flight duration and thus the distance covered during a migratory night. Yet, migratory songbirds show substantial variation in their nocturnal departure timing. 2. With this study we aim to assess whether the respective challenges of the migration route, namely its distance and nature, help to explain this variation. 3. At a stopover site, we caught Northern Wheatears (Oenanthe oenanthe) of two subspecies that differ in distance and nature of their onward migration route in spring, but not in autumn. We determined the start of their nocturnal migratory restlessness during short-term captivity, and radio-tracked their nocturnal departure timing after release in both migration seasons. 4. Northern Wheatears started their nocturnal migratory restlessness earlier when facing a long remaining migration distance and an extended sea barrier in spring. Individual departure directions generally affected the nocturnal departure timing with early departures being directed towards the respective migratory destination. In spring, this pattern was predominantly found in birds carrying relatively large fuel stores, but was absent in lean birds. At the same time, birds facing a short remaining migration distance and no extended sea barrier strongly reacted to relatively large fuel stores by an early start of nocturnal migratory behavior (migratory restlessness and departure timing), whereas this reaction was not found in birds facing a long remaining migration distance and sea barrier. 5. These results suggest that the basic diel schedule of birds' migratory activity is adapted to the onward migration route. Further they suggest that birds adjust their behavioral response, i.e. start of nocturnal migratory behavior, to fuel stores in relation to their impending migratory challenges. This is a substantial step in understanding variation of nocturnal departure timing and its adjustments in migratory songbirds. Further, it emphasizes the importance of interpreting birds' nocturnal migratory behavior in the respective ecological context.
Data from: Bird migratory flyways influence the phylogeography of the invasive brine shrimp Artemia franciscana in its native American range
Since Darwin's time, waterbirds have been considered an important vector for the dispersal of continental aquatic invertebrates. Bird movements have facilitated the worldwide invasion of the American brine shrimp Artemia franciscana, transporting cysts (diapausing eggs), and favouring rapid range expansions from introduction sites. Here we address the impact of bird migratory flyways on the population genetic structure and phylogeography of A. franciscana in its native range in the Americas. We examined the sequence variation for two mitochondrial gene fragments (COI and 16S for a subset of the data) in a large set of population samples representing the entire native range of A. franciscana. Furthermore, we performed Mantel tests and redundancy analyses (RDA) to test the role of flyways, geography and human introductions on the phylogeography and population genetic structure at a continental scale. A. franciscana mitochondrial DNA was very diverse, with two main clades, largely corresponding to Pacific and Atlantic populations, mirroring American bird flyways. There was a high degree of regional endemism, with populations subdivided into at least 12 divergent, geographically restricted and largely allopatric mitochondrial lineages, and high levels of population structure ( Φ ST of 0.92), indicating low ongoing gene flow. We found evidence of human-mediated introductions in nine out of 39 populations analysed. Once these populations were removed, Mantel tests revealed a strong association between genetic variation and geographic distance (i.e., isolation-by-distance pattern). RDA showed that shared bird flyways explained around 20% of the variance in genetic distance between populations and this was highly significant, once geographic distance was controlled for. The variance explained increased to 30% when the factor human introduction was included in the model. Our findings suggest that bird-mediated transport of brine shrimp propagules does not result in substantial ongoing gene flow; instead, it had a significant historical role on the current species phylogeography, facilitating the colonisation of new aquatic environments as they become available along their main migratory flyways.
Data from: Satellite tracking reveals novel migratory patterns and the importance of seamounts for endangered South Pacific humpback whales
The humpback whale population of New Caledonia appears to display a novel migratory pattern characterized by multiple directions, long migratory paths and frequent pauses over seamounts and other shallow geographical features. Using satellite-monitored radio tags, we tracked 34 whales for between 5 and 110 days, travelling between 270 and 8540 km on their southward migration from a breeding ground in southern New Caledonia. Mean migration speed was 3.53±2.22 km h−1, while movements within the breeding ground averaged 2.01±1.63 km h−1. The tag data demonstrate that seamounts play an important role as offshore habitats for this species. Whales displayed an intensive use of oceanic seamounts both in the breeding season and on migration. Seamounts probably serve multiple and important roles as breeding locations, resting areas, navigational landmarks or even supplemental feeding grounds for this species, which can be viewed as a transient component of the seamount communities. Satellite telemetry suggests that seamounts represent an overlooked cryptic habitat for the species. The frequent use by humpback whales of such remote locations has important implications for conservation and management.
Data from: Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird
Investigating the extent (or the existence) of local adaptation is crucial to understanding how populations adapt. When experiments or fitness measurements are difficult or impossible to perform in natural populations, genomic techniques allow us to investigate local adaptation through the comparison of allele frequencies and outlier loci along environmental clines. The thick-billed murre (Uria lomvia) is a highly philopatric colonial arctic seabird that occupies a significant environmental gradient, shows marked phenotypic differences among colonies, and has large effective population sizes. To test whether thick-billed murres from five colonies along the eastern Canadian Arctic coast show genomic signatures of local adaptation to their breeding grounds, we analyzed geographic variation in genome-wide markers mapped to a newly assembled thick-billed murre reference genome. We used outlier analyses to detect loci putatively under selection, and clustering analyses to investigate patterns of differentiation based on 2220 genomewide single nucleotide polymorphisms (SNPs) and 137 outlier SNPs. We found no evidence of population structure among colonies using all loci but found population structure based on outliers only, where birds from the two northernmost colonies (Minarets and Prince Leopold) grouped with birds from the southernmost colony (Gannet), and birds from Coats and Akpatok were distinct from all other colonies. Although results from our analyses did not support local adaptation along the latitudinal cline of breeding colonies, outlier loci grouped birds from different colonies according to their non-breeding distributions, suggesting that outliers may be informative about adaptation and/or demographic connectivity associated with their migration patterns or nonbreeding grounds.
Concurrent shifts in wintering distribution and phenology in migratory swans
<p>Range shifts and phenological change are two processes by which organisms respond to environmental warming. Understanding the mechanisms that drive these changes is key for optimal conservation and management. Here we study both processes in the migratory Bewick's swan (<i>Cygnus columbianus bewickii</i>) using different methods, analysing nearly 50 years of resighting data (1970-2017). In this period the wintering area of the Bewick's swans shifted eastwards ("short-stopping") at a rate of >12.5 km y<sup>-1</sup>, thereby shortening individual migration distance on average by 353 km. Concurrently, the time spent at the wintering grounds has reduced ("short-staying") by ~38 days since 1989. We show that individuals are consistent in their migratory timing in winter, indicating that the frequency of individuals with different migratory schedules has changed over time (a generational shift). In contrast, for short-stopping we found evidence for both individual plasticity (individuals decrease their migration distances over their lifetime) and generational shift. Additional analysis of swan resightings with temperature data showed that, throughout the winter, Bewick's swans frequent areas where air temperatures are <i>c.</i> 5.5˚C. These areas have also shifted eastwards over time, hinting that climate warming is a contributing factor behind the observed changes in the swans' distribution. The occurrence of winter short-stopping and short-staying suggests that this species is to some extent able to adjust to climate warming, but benefits or repercussions at other times of the annual cycle need to be assessed. Furthermore, these phenomena could lead to changes in abundance in certain areas, with resulting monitoring and conservation implications. Understanding the processes and driving mechanisms behind population changes therefore is important for population management, both locally and across the species range.</p>
Data from: Non-breeding range size predicts the magnitude of population trends in trans-Saharan migratory passerine birds
Understanding why populations of some migratory species show a directional change over time, i.e. increase or decrease, while others do not, remains a challenge for ecological research. One possible explanation is that species with smaller non-breeding ranges may have more pronounced directional population trends, and their populations are thus more sensitive to the variation in environmental conditions in their non-breeding quarters. According to the serial residency hypothesis, this sensitivity should lead to higher magnitudes (i.e. absolute values) of population trends for species with smaller non-breeding ranges, with the direction of trend being either positive or negative depending on the nature of the environmental change. We tested this hypothesis using population trends over 2001–2012 for 36 sub-Saharan migratory passerine birds breeding in Europe. Namely, we related the magnitude of the species' population trends to the size of their sub-Saharan non-breeding grounds, whilst controlling for factors including number of migration routes, non-breeding habitat niche and wetness, breeding habitat type and life-history strategy. The magnitude of species' population trends grew with decreasing absolute size of sub-Saharan non-breeding ranges, and this result remained significant when non-breeding range size was expressed relative to the size of the breeding range. After repeating the analysis with the trend direction, the relationship with the non-breeding range size disappeared, indicating that both population decreases and increases are frequent amongst species with small non-breeding range sizes. Therefore, species with small non-breeding ranges are at a higher risk of population decline due to adverse factors such as habitat loss or climatic extremes, but their populations are also more likely to increase when suitable conditions appear. As non-breeding ranges may originate from stochasticity of non-breeding site selection in naive birds ('serial-residency' hypothesis), it is crucial to maintain a network of stable and resilient habitats over large areas of birds' non-breeding quarters.
Data from: Future suitability of habitat in a migratory ungulate under climate change
With climate change, the effect of global warming on snow cover is expected to cause range expansion and enhance habitat suitability for species at their northern distribution limits. However, how this depend on landscape topography and sex in size-dimorphic species remains uncertain, and is further complicated for migratory animals following climate-driven seasonal resource fluctuations across vast landscapes. Using 11 years of data from a partially migratory ungulate at their northern distribution ranges, the red deer (Cervus elaphus), we predicted sex-specific summer and winter habitat suitability in diverse landscapes under medium and severe global warming. We found large increases in future winter habitat suitability, resulting in expansion of winter ranges as currently unsuitable habitat became suitable. Even moderate warming decreased snow cover substantially, with no suitability difference between warming scenarios. Winter ranges will hence not expand linearly with warming, even for species at their northern distribution limits. Although less pronounced than in winter, summer ranges also expanded and more so under severe warming. Summer habitat suitability was positively correlated with landscape topography and ranges expanded more for females than males. Our study highlights the complexity of predicting future habitat suitability for conservation and management of size-dimorphic, migratory species under global warming.
Data from: Adoption of alternative migratory tactics: a view from the ultimate mechanism and threshold trait changes in a salmonid fish
Partial migration, in which a portion of the population migrates while the rest of the population remains as residents, is a common form of migration. Alternative migratory tactics (AMTs) of partial migration are often determined by polygenic threshold traits. However, the ultimate mechanisms that drive inter-population variations in threshold traits are not well understood. We present a simple schematic model to explain how the threshold trait changes with fitness consequences under opposing natural and artificial selection forces. We conducted a field test to evaluate the effects of migration difficulty (as a natural selective force) and selective captive breeding (as an artificial selective force) on threshold traits of a partially migratory fish. Male masu salmon (<i>Oncorhynchus masou</i>) in the Shari River system have AMTs divided into three population categories of hatchery, wild/above the waterfall, and wild/below the waterfall (control). The wild/above the waterfall salmon live in a high-migration-cost situation, and the threshold trait changed in a direction that promoted residency. In hatchery salmon, which are produced by migrant-selective captive breeding, the threshold trait changed in a direction that promoted migration. In contrast, Dolly Varden charr (<i>Salvelinus malma</i>) displayed only resident tactics, and the threshold trait did not differ between the populations above and below the waterfall, indicating that environment did not explain the variation in the threshold trait. Our results support the model and suggest that opposing natural and artificial selection forces drive variations in the threshold traits and migratory patterns in the studied species. Our conceptual framework for the ultimate mechanism may help to better understand adoption of AMTs and production of diverse intraspecific traits in migratory animals.
Data from: Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation
Differential gene flow, reductions in diversity following linked selection and/or features of the genome can structure patterns of genomic differentiation during the process of speciation. Possible sources of reproductive isolation are well studied between coastal and inland subspecies groups of Swainson's thrushes, with differences in seasonal migratory behaviour likely playing a key role in reducing hybrid fitness. We assembled and annotated a draft reference genome for this species and generated whole-genome shotgun sequence data for populations adjacent to the hybrid zone between these groups. We documented substantial genomewide heterogeneity in relative estimates of genetic differentiation between the groups. Within population diversity was lower in areas of high relative differentiation, supporting a role for selective sweeps in generating this pattern. Absolute genetic differentiation was reduced in these areas, further suggesting that recurrent selective sweeps in the ancestral population and/or between divergent populations following secondary contact likely occurred. Relative genetic differentiation was also higher near centromeres and on the Z chromosome, suggesting that features of the genome also contribute to genomewide heterogeneity. Genes linked to migratory traits were concentrated in islands of differentiation, supporting previous suggestions that seasonal migration is under divergent selection between Swainson's thrushes. Differences in migratory behaviour likely play a central role in the speciation of many taxa; we developed the infrastructure here to permit future investigations into the role several candidate genes play in reducing gene flow between not only Swainson's thrushes but other species as well.
Consequences of migratory coupling of predators and prey when mediated by human actions
<p><span><span><span><span><span><span><span><span><span><span><span><strong>Aim</strong>: Animal migrations influence ecosystem structure, dynamics, and persistence of predator and prey populations. The theory of migratory coupling postulates that aggregations of migrant prey can induce large-scale synchronized movements in predators, and this coupling is consequential for the dynamics of ecological communities. The degree to which humans influence these interactions remains largely unknown. We tested whether the creation of large resource pulses by humans such as seasonal herding of reindeer <em>Rangifer tarandus</em> and hunting of moose, Alces alces, can induce migratory coupling with Golden Eagles, <em>Aquila chrysaetos</em>, and if these lead to demographic consequences for the eagles.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><strong> Location</strong>: Fennoscandia</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><strong>Methods</strong>: We used movement data from 32 tracked Golden Eagles spanning 125 annual migratory cycles over eight years. We obtained reindeer distribution data through collaboration with reindeer herders based on satellite tracking of reindeer, and moose harvest data from the national hunting statistics for Sweden. We assessed demographic consequences for eagles from ingesting lead from ammunition fragments in moose carcasses through survival estimates and their links with lead concentrations in eagles' blood.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><strong>Results</strong>: In spring, eagles migrated hundreds of kilometers to be spatially and temporally coupled with calving reindeer, whereas in autumn, eagles matched their distribution with the location and timing of moose hunt. Juveniles were more likely to couple with reindeer calving, whereas adults were particularly drawn to areas of higher moose harvest. Due to this coupling, eagles ingested lead from spent ammunition in moose offal and carcasses and the resulting lead-toxicity increased the risk of mortality by 3.4 times.</span></span></span></span></span></span></span></span></span></span></span></p> <p><span><span><span><span><span><span><span><span><span><span><span><strong>Main conclusions</strong>: We show how migratory coupling connects landscape processes and that human actions can influence migratory coupling over large spatial scales and increase demographic risks for predators. We provide vital knowledge towards resolving human wildlife conflicts and the conservation of protected species over a large spatial and temporal scale.</span></span></span></span></span></span></span></span></span></span></span></p>
Data from: Pro-inflammatory immune response is linked to wintering habitat in a migratory shorebird
<p><span>Migratory shorebirds (Charadrii) show a strong dichotomy in their breeding and wintering strategies: Arctic-breeding species typically spend the wintering season in marine habitats, while more southerly breeding species tend to do so in freshwater habitats where pathogens and parasites, particularly vector-borne blood parasites, are generally more abundant. Thus, it has been hypothesized that the former group may reduce their investment in immunity, but experimental data supporting this hypothesis are lacking. Moreover, whether this contrasting habitat selection can shape investments in immunocompetence among populations within a species is uncertain. We experimentally tested the hypothesis that there is a significant association between habitat occupancy and the strength of a pro-inflammatory immune response in Dunlins <i>Calidris alpina</i>, a widely distributed long-distance migratory shorebird that breeds in (sub-)arctic areas and winters mainly, but not exclusively, in coastal habitats. Overwintering Dunlins occupying inland freshwater and marine habitats at a similar latitude were captured and acclimated under identical conditions in outdoor aviaries. After an acclimation period, they were challenged with phytohemagglutinin to assess the pro-inflammatory immune response and its associated energetic costs, measured by basal metabolic rate (BMR) and body mass changes. We found that freshwater Dunlins exhibited a higher (63%) pro-inflammatory immune response than marine Dunlins. Although this difference did not involve significant BMR changes, the time course of body mass response differed between freshwater and marine individuals. Our findings point to the existence of different pro-inflammatory immune and energetic strategies associated to the wintering habitat. These intraspecific differences are likely due to population adaptation rather than phenotypic plasticity, where not only disease risk but also physiological adaptations to different salinity levels could play an important role. </span></p>
Far Eastern Curlew and Whimbrel prefer flying low: wind support and good visibility appear only secondary factors in determining migratory flight altitude
<p><b>Background:</b> In-flight conditions are hypothesized to influence the timing and success of long-distance migration. Wind assistance and thermal uplift are thought to reduce the energetic costs of flight, humidity, air pressure and temperature may affect the migrants' water balance, and clouds may impede navigation. Recent advances in animal-borne long-distance tracking enable evaluating the importance of these factors in determining animals' flight altitude.</p> <p><b>Methods:</b> Here we determine the effects of wind, humidity, temperature, cloud cover, and altitude (as proxy for climbing costs and air pressure) on flight altitude selection of two long-distance migratory shorebirds, far eastern curlew (<i>Numenius madagascariensis</i>) and whimbrel (<i>Numenius phaeopus</i>). To reveal the predominant drivers of flight altitude selection during migration we compared the atmospheric conditions at the altitude the birds were found flying with conditions elsewhere in the air column using conditional logistic mixed effect models.</p> <p><b>Results:</b> Our results demonstrate that despite occasional high-altitude migrations (up to 5,550 m above ground level), our study species typically forego flying at high altitudes, limiting climbing costs and potentially alleviating water loss and facilitating navigation. While mainly migrating at low altitude, the birds also preferred flying with wind support to likely reduce flight costs, and avoided clouds, which would help navigation and reduce the risks from adverse weather.</p> <p><b>Conclusions:</b> We conclude that the primary determinant of avian migrant's flight altitude selection is a preference for low altitude with wind support as an important secondary factor. Our approach and findings can assist in predicting climate change effects on migration and in mitigating bird strikes with air traffic, wind farms, power lines, and other human-made structures.</p>
Parasite intensity and the evolution of migratory behavior
Migration can allow individuals to escape parasite infection, which can lead to a lower infection probability (prevalence) in a population and/or fewer parasites per individual (intensity). Since individuals with more parasites often have lower survival and/or fecundity, infection intensity shapes the life-history tradeoffs determining when migration is favored as a strategy to escape infection. Yet, most theory relies on susceptible-infected (SI) modeling frameworks, defining individuals as either healthy or infected, ignoring details of infection intensity. Here we develop a novel modeling approach that captures infection intensity as a spectrum, and ask under what conditions migration evolves as function of how infection intensity changes over time. We show that the relative timescales of migration and infection accumulation determine when migration is favored. We also find that population-level heterogeneity in infection intensity can lead to partial migration, where less-infected individuals migrate while more infected individuals remain resident. Our model is one of the first to consider how infection intensity can lead to migration. Our results frame migratory escape in light of infection intensity, rather than prevalence, thus demonstrating that decreased infection intensity should be considered a benefit of migration, alongside other typical drivers of migration.
Figure 1 in Nesting territory characteristics of a migratory South American forest hawk, the White-throated Hawk (Buteo albigula) (Aves: Accipitridae), in temperate rainforest remnants of Araucanía, southern Chile
Figure 1. white-throated hawk (Buteo albigula) egg (A) and 31-day-old nestling (B) found on one nesting platform in Llancahue, Valdivia, southern Chile.
Agriculture creates subtle genetic structure among migratory and non-migratory populations of burrowing owls throughout North America
Population structure across a species distribution primarily reflects historical, ecological and evolutionary processes. However, large-scale contemporaneous changes in land use have the potential to create changes in habitat quality and thereby cause changes in gene flow, population structure, and distributions. As such, land-use changes in one portion of a species range may explain declines in other portions of their range. For example, many burrowing owl populations have declined or become extirpated near the northern edge of the species' breeding distribution during the second half of the 20th century. In the same period, large extensions of thornscrub were converted to irrigated agriculture in northwestern Mexico. These irrigated areas may now support the highest densities of burrowing owls in North America. We tested the hypothesis that burrowing owls that colonized this recently created owl habitat in northwestern Mexico originated from declining migratory populations from the northern portion of the species' range (migration-driven breeding dispersal whereby long-distance migrants from Canada and the U.S. became year-round residents in the newly created irrigated agriculture areas in Mexico). We used 10 novel microsatellite markers to genotype 1,560 owls from 36 study locations in Canada, Mexico, and the United States. We found that burrowing owl populations are practically panmictic throughout the entire North American breeding range. However, an analysis of molecular variance provided some evidence that burrowing owl populations in northwestern Mexico and Canada together are more genetically differentiated from the rest of the populations in the breeding range, lending some support to our migration-driven breeding dispersal hypothesis. We found evidence of subtle genetic differentiation associated with irrigated agricultural areas in southern Sonora and Sinaloa in northwestern Mexico. Our results suggest that land-use can produce location-specific population dynamics leading to subtle genetic structure even in the absence of dispersal barriers.
Genomic assessment of global population structure in a highly migratory and habitat versatile apex predator, the tiger shark (Galeocerdo cuvier)
<p>Understanding the population dynamics of highly mobile, widely distributed, oceanic sharks, many of which are overexploited, is necessary to aid their conservation management. We investigated the global population genomics of tiger sharks (<i>Galeocerdo cuvier</i>), a circumglobally distributed, apex predator displaying remarkable behavioral versatility in its diet, habitat use (near coastal, coral reef, pelagic), and individual movement patterns (spatially resident to long-distance migrations). We genotyped 242 tiger sharks from 10 globally distributed locations at more than 2000 single nucleotide polymorphisms. Although this species often conducts massive distance migrations, the data show strong genetic differentiation at both neutral (<i>F</i><sub>ST</sub>=0.125-0.144) and candidate outlier loci (<i>F</i><sub>ST</sub>=0.570-0.761) between western Atlantic and Indo-Pacific sharks, suggesting the potential for adaptation to the environments specific to these oceanic regions. Within these regions, there was mixed support for population differentiation between northern and southern hemispheres in the western Atlantic, and none for structure within the Indian Ocean. Notably, the results demonstrate a low level of population differentiation of tiger sharks from the remote Hawaiian archipelago compared to sharks from the Indian Ocean (<i>F</i><sub>ST</sub>=0.003-0.005, <i>P</i><0.01). Given concerns about biodiversity loss and marine ecosystem impacts caused by overfishing of oceanic sharks in the midst of rapid environmental change, our results suggest it imperative that international fishery management prioritize conservation of the evolutionary potential of the highly genetically differentiated Atlantic and Indo-Pacific populations of this unique apex predator. Furthermore, we suggest targeted management attention to tiger sharks in the Hawaiian archipelago based on a precautionary biodiversity conservation perspective.</p>
A highly invasive malaria parasite has expanded its range to non-migratory birds in North America
<p>Parasite range expansions are a direct consequence of globalization and are an increasing threat to biodiversity. Here we report a recent range expansion of the SGS1 strain of a highly invasive parasite, Plasmodium relictum, to two non-migratory passerines in North America. Plasmodium relictum is considered one of the world's most invasive parasites and causes the disease avian malaria: this is the first reported case of SGS1 in wild birds of Western North America and wild non-migratory birds on the continent. Using a long-term database where researchers report avian malaria parasite infections, we summarized our current understanding of the geographic range of SGS1 and its known hosts. We also identified the most likely geographic region of this introduction event using the MSP1 allele. We hypothesize that this introduction resulted from movements of captive birds and subsequent spillover to native bird populations, via ecological fitting. Further work should be conducted to determine the extent to which SGS1 has spread following its introduction in North America.</p>
Burrow ambient temperature influences Helice crab activity and availability for migratory Red-crowned Cranes Grus japonensis
<p><span><span><span><span><span><span><span><span><span><span><span>For migratory birds that specialize on particular benthic macroinvertebrate species, the timing of migration is critical since prey availability may be temporally limited and a function of local ambient temperature. Hence, variation in local ambient temperature can influence the diet composition of migrant birds, and consequently they may be constrained by which stopover and wintering sites they are able to utilize during periods of colder temperatures. Here we use faecal analysis, observer-based population counts, digital video-recordings, and temperature data to test five predictions regarding the influence of local ambient temperature on the activity and availability of mudflat crabs - a key prey resource at three staging/wintering sites in eastern China, for migratory Red-crowned cranes (<i><span>Grus japonensis</span></i>) and how this subsequently influences crane diet and use of wetland sites. Pearson's correlations and generalised linear models revealed that mudflat crabs became significantly more surface active with increasing burrow ambient temperature. Piecewise regression analysis revealed that crab surface activity was largely limited to a burrow ambient temperature threshold between 12~13℃ after which activity significantly increased. Crab activity declining temporally during the crane's autumn migration period but increased during spring migration. Crabs accounted for a significant proportion of crane diet at two of three sites, however the frequency of crab remains was significantly different between sites, and between autumn and spring migration. Analyses of crane count data revealed a degree of congruence between the migration timing of Red-crowned cranes with periods of warmer ambient temperature, and a significant, positive correlation between the percentage of crab remains in crane faeces and site ambient temperature. Collectively our data suggests that temperature-related mudflat crab activity may provide an important time window for migratory Red-crowned cranes to utilise critical stop-over sites and the crabs' food resources.</span></span></span></span></span></span></span></span></span></span></span></p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.