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7,370 results for “supplementation”
Supplemental data. Gerritsma_AnBeh
<p>Research data Gerritsma et al., Animal Behaviour</p>
Extended Supplement for De-noising distributed acoustic sensing data using an adaptive frequency-wavenumber filter
<p>This electronical extended supplement presents an adaptive frequency-wavenumber filter suppresses the incoherent seismic noise while amplifying the coherent wave field in seismic distributed acoustic sensing (DAS) data. We analyse the response of the filter in time and spectral domain, and we demonstrate its performance on a noisy data set that was recorded in a vertical borehole observatory showing active and passive seismic phase arrivals. In these data we can suppress the noise up to 20 dB. This data publication serves as a repository for data an plotting scripts.</p>
Supplementary tables for Honey Bee symbiont buffers larvae against nutritional stress and supplements lysine
<p>Honey bees have suffered dramatic losses in recent years, largely due to multiple stressors underpinned by poor nutrition. Nutritional stress especially harms larvae, who mature into workers unable to meet the needs of their colony. In this study, we characterize the metabolic capabilities of a honey bee larvae-associated bacterium, <em>Bombella apis</em> (formerly <em>Parasaccharibacter apium</em>), and its effects on the nutritional resilience of larvae. We found that <em>B. apis</em> is the only bacterium associated with larvae that can withstand the antimicrobial larval diet. Further, we found that <em>B. apis</em> can synthesize all essential amino acids and significantly alters the amino acid content of synthetic larval diet, largely by supplying the essential amino acid lysine. Analyses of gene gain/loss across the phylogeny suggest that four amino acid transporters were gained in recent <em>B. apis</em> ancestors. In addition, the transporter LysE is conserved across all sequenced strains of <em>B. apis</em>. Finally, we tested the impact of <em>B. apis</em> on developing honey bee larvae subjected to nutritional stress and found that larvae supplemented with <em>B. apis</em> are bolstered against mass reduction despite limited nutrition. Together, these data suggest a novel role of <em>B. apis</em> as a nutritional mutualist of honey bee larvae.</p>
Objective identification of high-wind features within extratropical cyclones using a probabilistic random forest (RAMEFI). Part I: Method and illustrative case studies - Video Supplement
<p>These videos provide examples of application of RAMEFI (RAndom-forest based MEsoscale wind Feature Identification), a new objective identification of high-wind features within extratropical cyclones, for twelve selected case studies.</p>
Maternal and/or direct supplementation with a combination of a casein hydrolysate and yeast β-glucan on postweaning performance and intestinal health in the pig
<p>A 2 <span>× </span>2 factorial experiment was conducted to investigate the effect of maternal supplementation from day 83 of gestation and/or direct supplementation from weaning of a bovine casein hydrolysate plus a yeast β‑glucan (CH-YBG) on pig performance and intestinal health on day ten post‑weaning. Twenty cross bred gilts <span>(Large White × Landrace) were randomly assigned to one of two dietary groups (<em>n</em> = 10 gilts/group): basal diet (basal sows) and basal diet supplemented with </span>CH‑YBG (supplemented sows)<span> from day 83 of gestation until weaning (2g/sow/day). At weaning, 120 pigs (6 pigs/sow) were selected. The two dam groups were further divided, resulting in four experimental groups (10 replicates/group; 3 pigs/pen) as follows: 1) BB (basal sows + basal pigs); 2) BS (basal sows + supplemented pigs); 3) SB (supplemented sows + basal pigs); 4) SS (supplemented sows + supplemented pigs). Supplemented pigs were offered 0.5g CH‑YBG/kg of feed for 10 days post-weaning. On day 10 post‑weaning, 1 pig/pen was humanely sacrificed and samples were taken from the gastrointestinal tract for analysis. Pigs weaned from supplemented sows (SS, SB) had reduced faecal scores and incidence of diarrhoea (P<0.05) compared to pigs weaned from basal sows (BB, BS), with SS pigs not displaying the transient rise in faecal scores seen in the other three groups from day 3 to day 10 post‑weaning (P<0.05). Pigs weaned from supplemented sows had reduced feed intake (P<0.05), improved feed efficiency (P<0.05), increased butyrate concentrations (P<0.05), increased abundance of </span><em><span>Lactobacillus </span></em><span>(P<0.05) </span><span>and decreased abundance of </span><em><span>Enterobacteriaceae</span></em><span><em> </em>and <em>Campylobacteraceae </em>(P<0.05) compared to pigs weaned from basal sows. In conclusion, maternal supplementation increased the abundance of <em>Lactobacillus </em>and decreased the abundance of <em>Enterobacteriaceae </em>and <em>Campylobacteraceae </em>while also increasing butyrate concentrations. The combination of maternal and direct supplementation led to pigs having the lowest faecal scores compared to all other groups.</span></p>
Supplemental data files: XY sex determination in a cnidarian
<p><strong>Project Abstract:</strong></p> <p>Sex determination occurs across animal species, but most of our knowledge about the mechanisms of sex determination comes from only a handful of bilaterian taxa. This limits our ability to infer the evolutionary history of sex determination within animals. In this study, we generated a linkage map of the genome of the colonial cnidarian <em>Hydractinia symbiolongicarpus</em> and used this map to determine that this species has an XX/XY sex determination system. We delineate the pseudoautosomal and non-recombining regions of the Y chromosome and show that the latter encodes a number of genes with male gonad-specific expression. These findings establish Hydractinia as a tractable non-bilaterian model system for the study of sex determination. </p> <p> </p> <p>This archive contains supplemental data files for "XY sex determination in a cnidarian" by Chen et. al. The manuscript will be submitted to bioRxiv. </p> <ul> <li><strong>Hsym_primary_v1.0.fa.gz: </strong><em>Hydractinia </em>reference genome assembly</li> <li><strong>160429_CRATOS_HKM5MBCXX.lane1.12268798.read1.DOWNSAMPLE_0.2.fq.gz: </strong>Illumina reads for paternal genome downsampled with seqtk.</li> <li><strong>160429_CRATOS_HKM5MBCXX.lane1.12268798.read2.DOWNSAMPLE_0.2.fq.gz: </strong>Illumina reads for paternal genome downsampled with seqtk.</li> <li><strong>rawvariants.90f1.vcf.gz: </strong>Raw genotypes for all 90 offspring and the two parents, called by GATK HaplotypeCaller</li> <li><strong>GATKBP-passed.vcf.gz: </strong>Genotypes quality filtered according to GATK best practices and custom critera.</li> <li><strong>GATKBP-passed.femaleHet.abxabRemoved.vcf.gz: </strong>Genotypes suitable for mapping the maternal genome with a pseudo-testcross strategy.</li> <li><strong>GATKBP-passed.maleHet.abxabRemoved.vcf.gz: </strong>Genotypes suitable for mapping the paternal genome with a pseudo-testcross strategy.</li> </ul>
Supplemental data and code for Climate change will amplify the inequitable exposure to compound heatwave and ozone pollution
<p>Supplemental data and code for Climate change will amplify the inequitable exposure to compound heatwave and ozone pollution</p>
Supplemental Material to Article "Validation of crack initiation model by means of cyclic full-scale blade test"
<p>This set supplements the figure data to the article "Validation of crack initiation model by means of cyclic full-scale blade test", DOI: <a href="https://doi.org/10.1088/1742-6596/2265/3/032045">https://doi.org/10.1088/1742-6596/2265/3/032045</a>.</p>
Supplement data for https://github.com/paulsengroup/modle/pull/18
<p>Supplement data for https://github.com/paulsengroup/modle/pull/18</p>
TrainRuns.jl: an Open-Source Tool for Running Time Estimation - Supplement Data
<p>This additional data contains the initial data and the calculated results for comparing FBS and TrainRuns.jl.</p> <p><strong>File description</strong></p> <ul> <li><em>local.yaml</em>: input parameters for the local train</li> <li><em>freight.yaml</em>: input parameters for the freight train</li> <li><em>running_path.yaml</em>: input parameters for the path</li> <li><em>freight_FBS.csv</em>: export of calculation from FBS for the freight train</li> <li><em>freight_TrainRuns.csv</em>: export of calculation from TrainRun.jl converted in FBS units for the freight train</li> <li><em>freight_diff.csv</em>: the calculated difference between FBS.csv and TrainRuns.csv for the freight train</li> <li><em>local_FBS.csv</em>: export of calculation from FBS for the local train</li> <li><em>local_TrainRuns.csv</em>: export of calculation from TrainRun.jl converted in FBS units for the local train</li> <li><em>local_diff.csv</em>: the calculated difference between FBS.csv and TrainRuns.csv for the local train</li> <li><em>running_path.csv</em>: converted running_path.yaml for displaying</li> <li><em>comparison.tex</em>: LaTeX code for the graph in comparison.pdf</li> </ul> <p><strong>Sources</strong></p> <p>The calculations in FBS were done with the file 'Ostsachsen_V220.railml'. FBS needs a commercial license, which can be purchased. License for 'Ostsachsen_V220.railml' is Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND 3.0).<br> The file 'Ostsachsen_V220.railml' can be found at:<br> https://www.railml.org/en/user/exampledata.html (last accessed 2022-06-06 with login) -> "Real world railway examples from professional tools" -> "East Saxony railway network by FBS" -> "Ostsachsen_V220.railml"</p> <p>Other sources are mentioned in the files.</p>
Supplemental text for: Wuchiapingian (Lopingian, Late Permian) brachiopod fauna from Guangdong Province, southeastern China: systematics and contribution to the Lopingian recovery
<p><span>A most diversified Wuchiapingian brachiopod fauna, which contains 57 species in 28 genera, is described from the Shuizhutang Formation at Liannan section, Guangdong province, southeastern China. Four new species are proposed. Among these 57 species, many of them have been fully described in recent papers and thus are only illustrated in the manuscript and described herein.</span></p>
supplement figure for Rubin et al. Journal of the Endocrine Society. 2022
<p>Supplement figure for Rubin et al. Relationship between hypoglycemia awareness status on Clarke/Gold methods and counterregulatory response to hypoglycemia 2022</p>
Data supplement for "Wetting dynamics under periodic switching on different scales: Characterization and mechanisms"
<p>Data set and python code to recreate the figures of "Wetting dynamics under periodic switching on different scales: Characterization and mechanisms". Additionally, it includes the oomph-lib Code to reproduce the data for the simulations in the mesoscopic thin-film model.</p>
forests-1764430_supplement_2_figure
<p>Supplementary material for the manuscript “δ15N in birch and pine leaves in the vicinity of a large copper smelter indicating a change in the conditions of their soil nutrition” submitted for consideration “Forests”</p>
forests-1764430_supplement_1_data_table
<p>Supplementary material for the manuscript “δ15N in birch and pine leaves in the vicinity of a large copper smelter indicating a change in the conditions of their soil nutrition” submitted for consideration “Forests”.</p>
Supplemental file for Dual Strip Paper
<p>Supplemental file</p> <p>-</p>
Supplements for: Review and revision of the Olivoidea (Neogastropoda) from the Paleocene and Eocene of the U.S. Gulf Coastal Plain
<p>Numerous species of "oliviform" gastropods have been recognized in the Paleogene of the U.S. Gulf Coastal Plain, many of which have previously been allied to the "Bullia group" in the family Nassariidae, and placed in a variety of poorly-defined genera. We review these species, revise their generic and familial placement, and present a phylogenetic analysis. Of 19 species considered valid, all are assigned to Olivoidea, six to Olividae -- one to Oliva, five to Agaronia -- and the rest to Ancillariidae. The highly variable species Ancillaria altile Conrad, 1832 is referred in the genus Ancillopsis and appears to have evolved anagenetically over an interval of more than 15 million years. Ancillaria tenera Conrad, 1834a and Ancillaria scamba Conrad, 1832 are placed in the new genus Palmoliva. Monoptygma Lea, 1833 is demonstrated to belong to Ancillariidae, and to contain only a single species. Some specimens assigned to Lisbonia expansa Palmer, 1937 are split into adults assigned to Ancillopsis altilis and juveniles (together with several other species) in Anbullina elliptica (Whitfield, 1865). Coastal Plain ancillariids may have evolved from one or more species of the Cretaceous-Paleocene genus Eoancilla. We agree with previous authors who have suggested that the late Eocene species Oliva mississippiensis Conrad, 1848 is the earliest known representative of this genus and the subfamily Oliviinae, perhaps derived from a species of Agaronia. The oldest Agaronia is Lower Eocene (Ypresian).</p>
Supplemental information data from: "Evidence for amorphous sulfates as the main carrier of soil hydration in Gale crater, Mars"
<p>This dataset includes the target name and chemical composition of each ChemCam sequence used in the above-mentioned article. The quantification for each ChemCam spectrum in the soils of the Bradbury, Rocknest and Yellowknife Bay area are in percentage mass fractions (wt.%) for most major oxides (i.e., SiO2, TiO2, Al2O3, FeOT , MgO, CaO, Na2O, K2O). Sulfur and hydrogen abundances are expressed respectively in peak area (normalized) and ICA H scores.</p>
Supplemental Material to Journal Article "Determination of as-built properties of fiber reinforced polymers in a wind turbine blade using scanning electron and high-resolution X-ray microscopy"
<p>This set supplements the figure data to the article "Determination of as-built properties of fiber reinforced polymers in a wind turbine blade using scanning electron and high-resolution X-ray microscopy", DOI: <a href="https://doi.org/10.1016/j.jcomc.2022.100310">https://doi.org/10.1016/j.jcomc.2022.100310</a></p>
Figure 3–Figure Supplement 4 of the paper 'A Feed-forward Pathway Drives LRRK2 kinase Membrane Recruitment and Activation'
<p>Raw immunoblotting and quantitation data for Figure 3–Figure Supplement 4 of the paper "A Feed-forward Pathway Drives LRRK2 kinase Membrane Recruitment and Activation" (Edmundo G. Vides, Ayan Adhikar, Claire Y. Chiang, Pawel Lis, Elena Purlyte, Charles Limouse, Justin L. Shumate, Elena Spínola-Lasso, Herschel S. Dhekne, Dario R. Alessi, and Suzanne R. Pfeffer)</p> <p><strong>File descriptions:</strong></p> <p><strong>Figure 3–Figure Supplement 4A</strong><br> <strong>Fig.3.S4A_700(tRab10;tLRRK2)_High.tif </strong>- Licor scan (channel 700) showing total Rab10 and total LRRK2 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4A_700(tRab10;tLRRK2)_Low.tif</strong> - Licor scan (channel 700) showing total Rab10 and total LRRK2 blots; low contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4A_800(pRab10;pLRRK2)_High.tif</strong> - Licor scan (channel 800) showing Rab10 pT73 and LRRK2 pS935 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4A_800(pRab10;pLRRK2)_Low.tif</strong> - Licor scan (channel 800) showing Rab10 pT73 and LRRK2 pS935 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4A_HA.tif </strong>- ChemiDoc Scan (ECL) showing HA blot</p> <p><strong>Figure 3–Figure Supplement 4B</strong></p> <p><strong>Fig.3.S4B_700(tRab10;tLRRK2)_High.tif </strong>- Licor scan (channel 700) showing total Rab10 and total LRRK2 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4B_700(tRab10;tLRRK2)_Low.tif</strong> - Licor scan (channel 700) showing total Rab10 and total LRRK2 blots; low contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4B_800(pRab10;pLRRK2)_High.tif</strong> - Licor scan (channel 800) showing Rab10 pT73 and LRRK2 pS935 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4B_800(pRab10;pLRRK2)_Low.tif </strong>- Licor scan (channel 800) showing Rab10 pT73 and LRRK2 pS935 blots; high contrast<br> Panel 1 - top left membrane<br> Panel 2 - top right membrane<br> Panel 3 - bottom left membrane<br> Panel 4 - bottom right membrane</p> <p><strong>Fig.3.S4B_HA.tif </strong>- ChemiDoc Scan (ECL) showing HA blot</p> <p><strong>Fig.3.S4_immunoblotting_numerical_data.xlsx</strong> - Excel sheet containing raw quatitation values from Licor scans as well as calculated pRab10/Rab10 ratios (values used in Figure 3C and 3D)</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.