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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
CTCF regulates hepatitis B virus cccDNA chromatin topology [RNA-seq]
GEO Series GSE249278. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
A topological cluster of differentially regulated genes in mice lacking PER3
GEO Series GSE143650. Mus musculus. 30 samples. Type: Expression profiling by array.
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes (Hi-C II)
GEO Series GSE165375. Homo sapiens. 16 samples. Type: Other.
Hi-C following CTCF RNAi in LNCaP cells to determine changes to topological domains
GEO Series GSE125640. Homo sapiens. 6 samples. Type: Other.
Spo11 generates gaps through concerted cuts at sites of topological stress [dDSB]
GEO Series GSE171042. Saccharomyces cerevisiae; Saccharomyces kudriavzevii. 63 samples. Type: Other.
Regulated Capture of Vk Gene Topologically Associating Domains by Transcription Factories
GEO Series GSE84705. Mus musculus. 75 samples. Type: Expression profiling by high throughput sequencing.
Topological velocity inference from spatial transcriptomic data
GEO Series GSE291200. Homo sapiens. 1 samples. Type: Other.
Photo-sensitive oligonucleotides combined with topologically imposed light gradients enable spatially-resolved single-cell transcriptomics and epigenomics
GEO Series GSE237524. Homo sapiens. 56 samples. Type: Other.
Data from: Modeling of kidney hemodynamics: probability-based topology of an arterial network
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Data from: Topological materials discovery by large-order symmetry indicators
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Data from: Topological data analysis of biological aggregation models
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Data from: The topology of a discussion: the #occupy case
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Epigenetic maintenance of topological domains in the rearranged gibbon genome [Hi-C]
GEO Series GSE115062. Nomascus leucogenys. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium]
GEO Series GSE264334. Homo sapiens. 1 samples. Type: Other.
Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia
GEO Series GSE137662. Homo sapiens. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Chromosome topology shapes neuronal non-CG DNA methylation to influence MeCP2-mediated enhancer repression (RNA-Seq)
GEO Series GSE123372. Mus musculus. 42 samples. Type: Expression profiling by high throughput sequencing.
Argonaute2 and LaminB modulate gene expression by controlling chromatin topology (neuRNA-seq)
GEO Series GSE95845. Drosophila melanogaster. 23 samples. Type: Expression profiling by high throughput sequencing; Other.
Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact
GEO Series GSE149922. synthetic construct; Homo sapiens. 14 samples. Type: Other.
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene
GEO Series GSE77749. Streptococcus pneumoniae R6. 14 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
In situ dissection of domain boundaries affects genome topology and gene transcription in Drosophila
GEO Series GSE136137. Drosophila melanogaster. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.