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FIGURE 2 in Atacamaptilia ambrosiavora gen. et sp. nov. (Lepidoptera: Gracillariidae), a leaf miner of Ambrosia cumanensis (Asteraceae) in the Atacama Desert
FIGURE 2. Atacamaptilia ambrosiavora gen. et sp. nov. A. Paratype male, dorsal view. B. Head, anterior view. C. Wing venation. D. Male tergum VIII. E. Male sternum VIII. Scale bars 1, 0.2, 0.5, 0.2, 0.2 mm, respectively.
FIGURE 1 in Atacamaptilia ambrosiavora gen. et sp. nov. (Lepidoptera: Gracillariidae), a leaf miner of Ambrosia cumanensis (Asteraceae) in the Atacama Desert
FIGURE 1. Neighbor-Joining tree of Atacamaptilia ambrosiavora gen. et sp. nov. and representatives of Acrocercopinae (Gracillariidae) based on COI sequences.
Fig. 2 in Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk
Fig. 2. Up-to-date bacterial core gene tree (UBCG) based on a multigene alignment with 92 housekeeping genes. Genome data of type strains of the type species from the family Aerococcaceae available on the EzBioCloud database were used. The three isolates of this study are marked in bold. The tree was calculated based on the Tamura–Nei model using MEGA X software. Two hundred repetitions were performed to reveal statistic support which is shown at branch nodes (bootstrap values>50 %). Lactococcus lactis subsp. lactis was used as an outgroup. Bar, 0.1 substitution per nucleotide position.
Fig. 2 in Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes
Fig. 2. Phylogeny of strain HArcel1T. (a) Maximum-likelihood 16S rRNA gene sequence-based phylogenetic tree showing the position of strain HArcel1T (in bold) within the order Halobacteriales. Branch lengths (see scale) correspond to the number of substitutions per site with corrections, associated with the model (GTR, G+I, four categories). All positions with less than 95 % site coverage were eliminated. In total, 1435 positions were used in the alignment of 119 sequences. Numbers at nodes indicate bootstrap values of 1000 repetitions, bootstrap values below 50 % are not shown. The genus Halomarina was used as an outgroup. (b) Maximum-likelihood rpoB′ gene sequence-based tree showing the position of strain HArcel1T (in bold) within the order Halobacteriales. All parameters were the same as in 16S rRNA gene-based phylogeny. In total, 1827 positions were used in the alignment of 81 sequences. The genus Halomarina was used as an outgroup. (c) Maximum-likelihood tree based on alignment of 17 ribosomal proteins showing the position of strain HArcel1T (in bold) within the order Halobacteriales. Branch lengths (see scale) correspond to the number of substitutions per site with corrections, associated with the model (LG, G+I, four categories). All positions with less than 95 % site coverage were eliminated. In total, 2938 positions were used in the alignment of 40 amino acid sequences. The genus Natronomonas was used as an outgroup.
Fig. 1 in Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk
Fig. 1. Maximum-likelihood tree based on the almost-complete 16S rRNA gene sequences of strains WS4937T, WS4759, WS5303 and type strains of all species of the family Aerococcaceae. Type strains of the type species are marked in bold. Sequences of the strains were retrieved from EzBioCloud. The tree was calculated using the Tamura–Nei model. Bootstrap values (>50%) based on 500 repetitions are shown at branch nodes. Analyses were performed using MEGA X. Lactococcus lactis subsp. lactis was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.
Fig. 1 in Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter
Fig. 1. Phylogenetic tree based on nearly complete 16S rRNA gene sequences (1321 bp), showing the relationship between strain MEBiC09520T and the nearest members of the class Alphaproteobacteria. The tree is based on the Juke and Cantor distance model and the neighbour-joining method with 1000 bootstraps. The maximum-likelihood and maximum-parsimony algorithms with bootstrapping were also used. The sequences of Caulobacter vibrioides DSM 9893T (AJ227754) and Erythrobacter litoralis HTCC2594 (CP000157) were used as an outgroup. Nodes recovered by three treeing methods at>70% are indicated by stars, recovered by three methods but at <70% by open circles and recovered by two methods by closed circles.
Fig. 2 in MaNgROVIVIRga CUNICULI gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family MaNgROVIVIRgaCeae fam. nov.
Fig. 2. (a) Maximum-likelihood phylogenetic tree based on the 16S rRNA gene sequences presenting the position of Mangrovivirga cuniculi R1DC9T (MT146883). Only bootstrap values (expressed as percentages of 1000 replications) exceeding 50% are shown at branching points. Psychroflexus torquis ATCC 700755T (GenBank accession no. U85881) was used as an outgroup. Bar, 0.040 substitutions per nucleotide position. Filled circles indicate branches that were also recovered using the neighbour-joining method. (b) Maximumlikelihood phylogenetic tree highlighting the position of R1DC9T relative to the other type strains within the order Cytophagales, including members of the families Marivirgaceae, Roseivirgaceae, Reichenbachiellaceae, Fulvivirgaceae, Cesiribacteraceae and Flammeovirgaceae. The phylogenetic tree was built using 120 concatenated single-copy genes obtained using GTDB-Tk software [34]. Bootstrap values greater than 50% based on 1000 replications are indicated at branching nodes. Bar, 0.2 substitutions per nucleotide position.
Fig. 1 in Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes
Fig. 1. Morphology of strain HArcel1T growing at 4 M total NaCl and 37 ǪC. (a) Colonies on amorphous cellulose plates forming large hydrolysis zones; (b) phase contrast microphotograph of cells grown with amorphous cellulose in liquid culture; (c) phase contrast microphotograph of cells forming biofilm on a cellulose fibre; (d) electron microscopy of thin sections of cells grown with amorphous cellulose. CW, cell wall; CM, cytoplasmic membrane; N, nucleoid.
Fig. 3 in Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs
Fig. 3. Microscopic observation of strain A1T. (a) Phase contrast microscopy image of strain A1T grown on acetate and oxygen. The three strains are visually indistinguishable. (b) SEM image of strain A1T on carbon filter paper. Morphologies are indistinguishable for the three strains. (c) TEM image of strain A1T grown on acetate with oxygen.
Fig. 2 in Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs
Fig. 2. Phylogenomic relationship based on concatenated alignment of amino acid sequences between strains A1T, B1T and H1T and other related taxa of the family Comamonadaceae. The tree was reconstructed using the maximum-likelihood method based on concatenated alignment of amino acid sequences of 30 conserved marker genes coded in the genomes. Bootstrap values are shown at branch points.
Fig. 1 in MaNgROVIVIRga CUNICULI gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family MaNgROVIVIRgaCeae fam. nov.
Fig. 1. (a) Sediments in the mangrove forest at KAUST bioturbated by Uca species crabs; crab barrows are indicated by yellow arrows. Leaves forming mangrove litter are also visible. Bar, 10 cm. (b) Aquarium filled with mangrove bioturbated sediments and FSW for the incubation of DCs; bar, 6 cm. (c) Aerial view of DCs placed on the surface of mangrove sediments and cover with FSW inside the aquarium; bar, 6 cm.
Fig. 1 in Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus × euramericana canker
Fig. 1. Maximum-likelihood tree showing phylogenetic relationships among members of the family Staphylococcaceae and two novel strains based on 16S rRNA gene sequences. Bacillus beringensis BR035T was used as an outgroup. Numbers at nodes are bootstrap values (%) based on 1000 replicates; only bootstrap values>50 % are shown. Bar, 0.01 substitutions per nucleotide site.
FIGURES 410–415. Amazonius germani n. gen. n in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 410–415. Amazonius germani n. gen. n. sp. male palp bulb variation (410–412) INPA 9111, left bulb (mirrored). 410, retrolateral. 411, prolateral. 412, dorsal. (413–415) (MPEG 0015638), left bulb (mirrored). 413, retrolateral. 414, prolateral. 415, dorsal. Scale bars = 1 mm.
FIGURES 364–371. Amazonius giovaninii n. gen. n in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 364–371. Amazonius giovaninii n. gen. n. sp. (364–370) paratype male (INPA 9105). (364–367) left bulb (mirrored). 364, retrolateral. 365, prolateral. 366, frontal. 367, dorsal. (368–370) left leg I tibial apophysis. 368, ventral. 369, prolateral. 370, retrolateral. 371, holotype female (MNRJ 7715), spermathecae. Scale bars = 1 mm.
FIGURES 388–391. Amazonius giovaninii n. gen. n in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 388–391. Amazonius giovaninii n. gen. n. sp., spermathecae variation. 388, MNRJ 7716. 389, INPA 9110. 390, IBSP 3814. 391, INPA 9109. Scale bars = 1 mm.
FIGURES 342–344. Amazonius elenae living. 342 in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 342–344. Amazonius elenae living. 342, female from Brazil, state of Acre, Senador Guiomard. 343, female from Peru, Loreto, Rio Momom, eating a Norops ortonii lizard. 344, male from Brazil, state of Acre, Cruzeiro do Sul. Photos: 342, Rogério Bertani; 343, Rick C. West; 344, Saymon Albuquerque.
FIGURES 324–329. Amazonius elenae n in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 324–329. Amazonius elenae n. comb., male, bulb variation. (324–326) MZUSP 46302, left bulb (mirrored). 324, retrolateral. 325, prolateral. 326, dorsal. (327–329) MZUSP 39179, left bulb (mirrored). 327, retrolateral. 328, prolateral. 329, dorsal. Scale bars = 1 mm.
FIGURES 320–323. Amazonius elenae n in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 320–323. Amazonius elenae n. comb. (320–321) male (MZUSP 35369). 320, left maxilla (mirrored) showing lyra. 321, basal chelicerae showing strikers. (322–323) female (MNRJ 7712). 322, left maxilla (mirrored) showing lyra. 323, basal chelicerae showing strikers. Scale bars = 1 mm.
FIGURES 307–310 in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 307–310. Psalmopoeus victori. (307–310) female (MZUSP 76545). 307, left maxilla showing lyra (mirrored). 308, basal chelicerae showing strikers. 309, spermathecae. 310, living female, Photo: Rick C. West. Scale bars = 1 mm.
FIGURES 301–304 in Taxonomic revision and cladistic analysis of the tarantula genera Tapinauchenius Ausserer, 1871, Psalmopoeus Pocock, 1985, and Amazonius n. gen. (Theraphosidae, Psalmopoeinae)
FIGURES 301–304. Psalmopoeus langenbucheri. (301–302) paratype male (SMF 58087). 301, left maxilla showing lyra (mirrored). 302, basal chelicerae showing strikers. (303–304) holotype female (SMF 58086). 303, left maxilla showing lyra (mirrored). 304, basal chelicerae showing strikers. Scale bars = 1 mm.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.