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Distribution. Recorded as living animal from the vicinity of Lake Habbema (3225 m) and an area close to Mt Trikora, WC New Guinea. Late Quaternary subfossils reported (as Hydromys habbema) from Kelangurr Cave and from alluvial terrace of West Baliem River, at 280-2950 m,Papua Province. Tentative record of habbema from a fissure deposit at 3450 m on Mt Jaya requires confirmation. in Muridae
Distribution. Recorded as living animal from the vicinity of Lake Habbema (3225 m) and an area close to Mt Trikora, WC New Guinea. Late Quaternary subfossils reported (as Hydromys habbema) from Kelangurr Cave and from alluvial terrace of West Baliem River, at 280-2950 m,Papua Province. Tentative record of habbema from a fissure deposit at 3450 m on Mt Jaya requires confirmation.
Supplementary animations to accompany the paper "Energetic particle loss mechanisms in reactor-scale equilibria close to quasisymmetry".
<p>Supplementary animations to accompany the paper "Energetic particle loss mechanisms in reactor-scale equilibria close to quasisymmetry".</p>
Animation for "Capturing synoptic-scale variations in surface aerosol pollution using deep learning with meteorological data"
<p>Animation for "Capturing synoptic-scale variations in surface aerosol pollution using deep learning with meteorological data"</p>
DAS Animation
<p>Animation depicting how Distributed Acoustic Sensing (DAS) light pulse transmission and backscattered works within a fiber optic cable.</p>
Figure 2. Living animals. A in Extra-branchial processes manifest extra diversity: systematics of the genus Trapania (Nudibranchia: Goniodorididae) and nine new species descriptions
Figure 2. Living animals. A, Trapania japonica (Baba, 1935), CASIZ 221116, Mabini, Batangas, Philippines, photo by Peri Paleracio. B, Trapania tatsulok sp. nov., holotype, NMP 041333 (formerly CASIZ 200530), Calatagan, Batangas, Philippines. C, Trapania kahel sp. nov., holotype, NMP 041330 (formerly CASIZ 186131), Mabini, Batangas, Philippines. D, Trapania lemanioides sp. nov., holotype, NMP 041335 (formerly CASIZ 208433), Puerto Galera, Mindoro Oriental, Philippines. E, Trapania lemanioides sp. nov., paratype, CASIZ 221979, Romblon, Philippines. F, Trapania aurata Rudman, 1987, CASIZ 186205, Mabini, Batangas, Philippines. G, Trapania reticulata Rudman, 1987, CASIZ 191431, Madang, Papua New Guinea, photo by Vanessa Knutson. H, Trapania tigger sp. nov., holotype, NMP 041328 (formerly CASIZ 180412), Mabini, Batangas, Philippines, photo by Alicia McKowen. Photo by T. Gosliner unless indicated.
Figure 12. Living animals. A in Extra-branchial processes manifest extra diversity: systematics of the genus Trapania (Nudibranchia: Goniodorididae) and nine new species descriptions
Figure 12. Living animals. A, Trapania tamaraw sp. nov., holotype, NMP 041334 (formerly CASIZ 208391) Puerto Galera, Mindoro Oriental. B, Trapania stegodon sp. nov., holotype NMP 041332 (formerly CASIZ 186206), Anilao Harbor, Batangas, Philippines. C, Trapania sp. 'Anilao', preserved specimen, NMP 041329 (formerly CASIZ 182904), Anilao Harbor, Batangas, Philippines. D, Trapania kamagong sp. nov., holotype, NMP 041336 (formerly CASIZ 208585A), Puerto Galera, Mindoro Oriental, Philippines. E, upper photo Trapania kanaloa sp. nov., holotype CASIZ 189444, lower photo, Trapania sp. cf. kanaloa, CASIZ 199250, Koloa Landing, Kaua'i, Hawai'i, photo by Cory Pittman. F, Trapania undulata sp. nov., holotype, NMP 041331 (formerly CASIZ 186132), Ligpo Island, Bauan, Batangas, Philippines.
The effects of exploratory behavior on physical activity in a common animal model of human disease, zebrafish (Danio rerio)
<p>Zebrafish (Danio rerio) are widely accepted as a multidisciplinary vertebrate model for neurobehavioral and clinical studies, and more recently have become established as a model for exercise physiology and behavior. Individual differences in activity level (e.g., exploration) have been characterized in zebrafish, however, how different levels of exploration correspond to differences in motivation to engage in swimming behavior has not yet been explored. We screened individual zebrafish in two tests of exploration: the open field and novel tank diving tests. The fish were then exposed to a tank in which they could choose to enter a compartment with a flow of water (as a means of testing voluntary motivation to exercise). After a 2-day habituation period, behavioral observations were conducted. We used correlative analyses to investigate the robustness of the different exploration tests. Due to the complexity of dependent behavioral variables, we used machine learning to determine the personality variables that were best at predicting swimming behavior. Our results show that contrary to our predictions, the correlation between novel tank diving test variables and open field test variables was relatively weak. Novel tank diving variables were more correlated with themselves than open field variables were to each other. Males exhibited stronger relationships between behavioral variables than did females. In terms of swimming behavior, fish that spent more time in the swimming zone spent more time actively swimming, however, swimming behavior was inconsistent across the time of the study. All relationships between swimming variables and exploration tests were relatively weak, though novel tank diving test variables had stronger correlations. Machine learning showed that three novel tank diving variables (entries top/bottom, movement rate, average top entry duration) and one open field variable (proportion of time spent frozen) were the best predictors of swimming behavior, demonstrating that the novel tank diving test is a powerful tool to investigate exploration. Increased knowledge about how individual differences in exploration may play a role in swimming behavior in zebrafish is fundamental to their utility as a model of exercise physiology and behavior.</p>
Data from: Why are animals conspicuously colored? Evolution of sexual versus warning signals in land vertebrates
<p>Conspicuous colors (e.g. red, yellow, blue) have evolved numerous times across animals. But the function of this coloration can differ radically among species. Many species use this coloration as a sexual signal to conspecifics, whereas others use it as a warning signal to predators. Why do different species evolve conspicuous coloration in association with one function as opposed to the other? We address this question in terrestrial vertebrates (tetrapods) using phylogenetic approaches and test whether day-night activities of species help determine these patterns. Using phylogenetic logistic regression, we found that conspicuous, sexually dimorphic coloration is significantly associated with diurnal lineages (e.g. many birds and lizards). By contrast, the evolution of warning signals was significantly associated with large-scale clades that were ancestrally nocturnal (e.g. snakes, amphibians), regardless of the current diel activity of species. Overall, we show that the evolution of conspicuous coloration as warning signals or sexual signals is influenced by the ecology of species, both recently and in the ancient past.</p>
Data for: Inferring spatially-varying animal movement characteristics using a hierarchical continuous-time velocity model
<p>Understanding the spatial dynamics of animal movement is an essential component of maintaining ecological connectivity, conserving key habitats, and mitigating the impacts of anthropogenic disturbance. Altered movement and migratory patterns are often an early warning sign of the effects of environmental disturbance, and a precursor to population declines. Here, we present a hierarchical Bayesian framework based on Gaussian processes for analysing the spatial characteristics of animal movement. At the heart of our approach is a novel covariance kernel that links the spatially-varying parameters of a continuous-time velocity model with GPS locations from multiple individuals. We demonstrate the effectiveness of our framework by first applying it to a synthetic dataset, then by analysing telemetry data from the Serengeti wildebeest migration. Through application of our approach, we are able to identify the key pathways of the wildebeest migration as well as revealing the impacts of environmental features on movement behaviour.</p>
Proteomic Profiling for Identification of Animal Skin Species in Ancient Egyptian Archaeological Leather using Liquid Chromatography Coupled with Tandem Mass Spectrometry (Nano LC-MS/MS)
<p><strong>Proteomic Profiling for Identification of Animal Skin Species in Ancient Egyptian Archaeological Leather using Liquid Chromatography Coupled with Tandem Mass Spectrometry (Nano LC-MS/MS)</strong></p>
Figure 3 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 3. Subdivision of specimens into candidate species according to a model-based cluster analysis through normal mixture models on ten morphological characters (Table 2). The ventral view of the forcipular segment is illustrated for representative specimens of the candidate species. Denticles are indicated by arrowheads. The lower panel shows Bayesian information criterion (BIC) values of different models (coded as in the paper by Scrucca et al., 2016) in relation to the hypothetical number of candidate species.
Figure 2 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 2. Subdivision of 16S, COI and 28S haplotypes into candidate species according to different species delimitation methods. The ultrametric trees used for the general mixed Yule coalescent (GMYC) analyses are illustrated for the haplotypes of 16S and COI (all nodes: bootstrap supports ≥ 81% for 16S and ≥ 71% for COI). The median-joining network is illustrated for the 28S haplotypes (see also Supporting Information, Fig. S2). Mountain ranges where the haplotypes were found are also indicated.
Figure 6 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 6. Geometric morphometric analysis of between-population variation of the shape of the forcipular coxosternite in Clinopodes carinthiacus s.s.. The left panel shows landmarks (circles) and semilandmarks (diamonds) on a representative specimen (PD-G 7787, from population GUI). The right panel shows the distribution of 40 specimens from eight populations (codes as in Table 1) on the first and second principal components (bgPC 1 and bgPC 2) obtained from a between-group principal components analysis of the symmetric component of the shape. Polygons indicate populations. The wireframes along the components represent the variation in shape (dark blue) in comparison to the average shape (light blue).
Figure 1 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 1. Study area (white contour), sampling sites for the integrative species delimitation analysis (labelled symbols; codes as in Table 1) and all other sites of occurrence based on confidently identified specimens and validated published records (symbols without labels). Sites of occurrence of the two resulting species are distinguished (see key), and the single site of syntopy is indicated (white arrow).
Figure 4 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 4. Number of pairs of legs in specimens confidently identified as belonging to Clinopodes carinthiacus s.s. and Clinopodes strasseri in the study area. Differences between species are statistically significant for both males and females (Mann–Whitney U-test: P <0.0001 for both sexes; Supporting Information, Table S8).
SUSBIND video animation
<p>Video animation of SUSBIND. SUSBIND is an EU-funded project that develops and test biobased bidinders for furniture. SUSBIND is a collaborative European research and innovation project in the field of bioeconomy with 11 partners from 6 EU countries funded by the Bio Based Industries Joint Undertaking (BBI JU) under the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No. 792063.</p>
Data and code accompanying: Predator-induced transgenerational plasticity in animals: a meta-analysis.
<p>These data and code were used to generate the publication "Predator-induced transgenerational plasticity in animals: a meta-analysis", accepted in Oecologia (Oct 2022).</p> <p>Contents:</p> <ol> <li>R code file (can be opened as txt) - all code used to generate statistical models and results</li> <li>Datafile - main datafile containing all meta-analysis data, and a metadata sheet explaining each column. See paper and associated supplementary material for more detail.</li> </ol>
Vintage Animal Hide Satchel
Source: Objaverse 1.0 / Sketchfab
Scrolls unfold skeleton animation
Scrolls unfold skeleton animation Source: Objaverse 1.0 / Sketchfab
North American Animals
This diorama is at the Behring Museum in Blackhawk California. from 205 images in 01h:07m:56s. Source: Objaverse 1.0 / Sketchfab
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.