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15,277 results for “GENETICS”
FIGURE 2 in Genetic evaluation of the Baja California rock squirrel Otospermophilus atricapillus (Rodentia: Sciuridae)
FIGURE 2. Topology of phylogenetic relationships among specimens of O. atricapillus and O. beecheyi from California and the Baja California Peninsula based on the complete Cyt b gene Callospermophilus madrensis, C. lateralis, and C. saturatus was used as outgroup. The main topology recovered from all the analyses shows that O. atricapillus (haplotypes 29 to 32) and O. beecheyi (haplotypes 1-28) are monophyletic. All the phylogenetic analyses revealed three major clades. The first clade groups all specimens from lowlands across California and Baja California Peninsula (Clade A, Southern Clade); the second one contains specimens from the California highlands in El Dorado Natural Forest (Clade B, Northern Clade); and the third contains specimens from the California highlands in Yosemite (Clade C, Central Clade). The nodal support values in each of the main nodes are in order: NJ bootstrap, maximum-likelihood bootstrap, Bayesian posterior probabilities (x100), and maximumparsimony bootstrap. At the tip of each branch is the number of the haplotype.
FIGURE 1 in Genetic evaluation of the Baja California rock squirrel Otospermophilus atricapillus (Rodentia: Sciuridae)
FIGURE 1. Map of California and the Baja California Peninsula showing 20 geographic groups (A to T) from which specimens for the genetic analysis were collected. Localities are listed in Table 1. Localities are clustered into geographical groups. The light gray area represents the distribution of O. beecheyi and dark gray that of O. atricapillus. Solid circles are specimens from Clade A; solid squares from Clade B; and solid rhomboids from Clade C.
FIGURE 4 in Genetic evaluation of the Baja California rock squirrel Otospermophilus atricapillus (Rodentia: Sciuridae)
FIGURE 4. Observed (wide line) and expected (thin line) mismatch distributions for 800 cyt b gene, including Otospermophilus atricapillus and O. beecheyi. A) All the sample specimens from the seven subspecies of O. beecheyi and O. atricapillus. B) Specimens from Northern Clade. C) The specimens from Central Clade. D) Specimens from O. atricapillus, and E) All specimens Southern Clade.
FIGURE 3. Haplotype network for the 800 in Genetic evaluation of the Baja California rock squirrel Otospermophilus atricapillus (Rodentia: Sciuridae)
FIGURE 3. Haplotype network for the 800-bp Cyt b data set includes populations from California and the Baja California Peninsula. Each perpendicular hash mark across the line between adjacent haplotypes in the network represents a single-base substitution. The circle size is directly proportional to the number of specimens per haplotype; the key to the haplotype (Table 1) is adjacent to each circle; some haplotypes are present in more than one population. The clades are in boxes; Clade A (Southern Clade, lowlands across California and Baja California Peninsula); Clade B (Northern Clade, El Dorado Natural Forest); and Clade C (Central Clade, California highlands in Yosemite). Color for the haplotype circles are based on subspecies designation (see material and methods from subspecies allocation. Solid circle = O. b. atricapillus, dark gray circle O. b. beecheyi, light gray circle O. b. douglasii, open circle = O. b. fisheri, solid ellipse = O. b. nudipes, dark gray ellipse = O. b. parvulus, light gray ellipse = O. b. rupinarum, and open ellipse = O. b. sierrae.
FIGURES 20–21 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURES 20–21. Baetis braaschi, coloration of the imago male, Eastern Ukraine: 20, thorax and head, lateral view; 21, head, lateral view.
FIGURES 12–17 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURES 12–17. Baetis braaschi, shape of setae on pedicel: 12–13, Crimea; 14–15, Caucasus; 16–17, Eastern Ukraine.
FIGURES 3–11 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURES 3–11. Baetis braaschi, variability of the selected morphological characters: 3, shape of third segment of labial palp, Eastern Ukraine; 4, shape of third segment of labial palp, Crimea; 5, posterior margin of tergum IV, Eastern Ukraine; 6, posterior margin of tergum IV, Crimea; 7, posterior margin of tergum IV, Caucasus; 8, margin of paraproct plate, Crimea; 9, margin of paraproct plate, Caucasus; 10–11, margin of paraproct plate, Eastern Ukraine.
FIGURE 1 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURE 1. Map of the distribution of Baetis braaschi. Highlighted area—areal of the species; black points—localities of sampling for the present study.
FIGURE 24 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURE 24. Minimum spanning tree of 7 haplotypes. The base substitutions are marked by circles. Specimens exhibiting Eastern Ukrainian morphotype marked by "*", specimens exhibiting Crimean morphotype marked by "#".
FIGURE 2 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURE 2. Scheme of the labial palp measurements. The value q representing the degree of asymmetry was computed as q=a/b.
FIGURE 25 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURE 25. Topology of the Bayesian and ML tree of the molecular dataset. The numbers above branches are values of Bayesian posterior probability (first number, only values above 0.50 are displayed) and ML bootstrap support (second number, only values above 50% are displayed). Roman numbers indicate individual haplotypes as recognized by the TCS analysis. Specimens exhibiting Eastern Ukrainian morphotype marked by "*", specimens exhibiting Crimean morphotype marked by "#".
FIGURE 22–23 in Morphological and genetic variability of Baetis (Rhodobaetis) braaschi Zimmermann, 1980 (Ephemeroptera: Baetidae)
FIGURE 22–23. Baetis braaschi, hind wing (dorsal view): 22, Eastern Ukraine; 23, Crimea. Figure 23 redrawn from Godunko et al. (2004a).
F in Genetic diversity in the Carabodes marginatus species group (Acarida, Oribatida, Carabodidae) as inferred from allozymes
F. 3. Two-dimensional plot of multilocus genotype profiles based on principal component analysis (PCA).
F in Genetic diversity in the Carabodes marginatus species group (Acarida, Oribatida, Carabodidae) as inferred from allozymes
F. 1. C. marginatus typicus (right) and morphotype with short marginal notogastral setae (left). Both specimens were collected on Mt. Amiata.
Data related to the manuscript "Visualizing endogenous Rho activity with an improved localization-based, genetically encoded biosensor"
<p>These are the data that are related to the manuscript "Visualizing endogenous Rho activity with an improved localization-based, genetically encoded biosensor" by </p> <p>Eike K. Mahlandt<sup>1,*</sup>, Janine J. G. Arts<sup>1,2</sup>,Werner J. van der Meer<sup>1</sup>, Franka H. van der Linden<sup>1</sup>, Simon Tol<sup>2</sup>, Jaap D. van Buul<sup>1,2</sup>, Theodorus W. J. Gadella Jr.<sup>1</sup>, Joachim Goedhart<sup>1,*</sup></p> <p><sup>1</sup> Swammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, The Netherlands</p> <p><sup>2</sup> Molecular Cell Biology Lab at Dept. Molecular Hematology, Sanquin Research and Landsteiner Laboratory, Amsterdam, The Netherlands</p>
Figure 3 in Contemporary genetic structure reflects historical drainage isolation in an Australian snapping turtle, Elseya albagula
Figure 3. Bayesian population assignments for Elseya albagula individuals based on 12 microsatellite loci analysed in STRUCTURE, indicating structure by region and catchment. Individuals are represented by coloured vertical bars, which represent per cent genetic membership (y axis) within genetic units as indicated above each diagram. A, individual differentiation between two regional units (K = 2), and B, further substructuring amongst catchments within the southern region (K = 3). Black lines separate sampling locations, identified below (x axis). B, Burnett, F, Fitzroy; M, Mary.
Figure 9 in Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa
Figure 9. The Bayesian tree for COI gene sequences assigned to Trochulus. Two sequences of Trochulus lubomirskii (= Trichia lubomirskii = Plicuteria lubomirskii) and one Petasina bielzi were also included as the out-group. Labels for Trochulus hispidus, Trochulus plebeius, and Trochulus phorochaetius were coloured in red, blue, and green, respectively. Additional acronyms beside the species name or an ampersand symbol '&' indicate 100% sequence identity for the joined names. Numbers at nodes, in the order shown, correspond to posterior probabilities estimated in MrBayes (MB), as well as bootstrap support values calculated in TreeFinder (TF), and PAUP using the weighted least squares (LS) method. Values of the posterior probabilities and bootstrap percentages lower than 0.50 and 50%, respectively, were omitted or indicated by a dash '-'.
Figure 5 in Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa
Figure 5. Variation of the ratio of the umbilicus minor to its major diameter (u/U) in Trochulus phorochaetius and Trochulus plebeius. Numbers over the box plots indicate mean values. Letters 'a' and 'b' indicate significant differences determined by the Kruskal–Wallis test (P <0.001). Abbreviations are as defined in Table 1.
Figure 2. A in Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa
Figure 2. A, Trochulus phorochaetius specimen from Sassenage; B, Trochulus plebeius specimen from Échallon; C, T. plebeius specimen from Coiserette; D, Trochulus hispidus specimen from Schramberg. Scale bar: 5 mm.
Figure 4 in Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa
Figure 4. Canonical discriminant analysis based on shell measurements of Trochulus hispidus, Trochulus plebeius, Trochulus phorochaetius, and the Coiserette specimens. Wilks' lambda = 0.0229, F30,664 = 58.009, P <0.00001.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.