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Supplementary material 2 from: Herrera-Mesías F, Bause C, Ogan S, Burger H, Ayasse M, Weigand AM, Eltz T (2022) Double-blind validation of alternative wild bee identification techniques: DNA metabarcoding and in vivo determination in the field. Journal of Hymenoptera Research 93: 189-214. https://doi.org/10.3897/jhr.93.86723
Supplementary file 2
Supplementary material 5 from: Herrera-Mesías F, Ep Jarboui IK, Weigand AM (2022) A metabarcoding framework for wild bee assessment in Luxembourg. Journal of Hymenoptera Research 94: 215-246. https://doi.org/10.3897/jhr.94.84617
Overiew of MOTU data per mock community
Supplementary material 1 from: Herrera-Mesías F, Bause C, Ogan S, Burger H, Ayasse M, Weigand AM, Eltz T (2022) Double-blind validation of alternative wild bee identification techniques: DNA metabarcoding and in vivo determination in the field. Journal of Hymenoptera Research 93: 189-214. https://doi.org/10.3897/jhr.93.86723
Supplementary file 1
Supplementary material 8 from: Herrera-Mesías F, Ep Jarboui IK, Weigand AM (2022) A metabarcoding framework for wild bee assessment in Luxembourg. Journal of Hymenoptera Research 94: 215-246. https://doi.org/10.3897/jhr.94.84617
In silico primer performance evaluation using PrimerMiner with MOTU data sorted by wild bee genus
Supplementary material 1 from: Ventura de Almeida LF, Penteado-Dias AM (2022) Meteorus lucianae sp. nov. (Hymenoptera, Braconidae), a new parasitoid of the bud borer Crocidosema aporema (Lepidoptera, Tortricidae). Journal of Hymenoptera Research 93: 43-51. https://doi.org/10.3897/jhr.93.94621
Table S1
Supporting Information for the Journal Article "High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference treatment"
<p>This dataset contains the supporting information for the journal article "High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference treatment". It consists of two files:</p> <ul> <li>"structures.json", containing 3335 unique structures found in the exploration, and</li> <li>"energies.json", containing 2227 elementary steps and its energies found in the exploration</li> </ul> <p>In the file "structures.json", the following keys are used to characterize a structure:</p> <ul> <li> _id: the ID of the structure</li> <li>nAtoms: the total number of atoms in the structure</li> <li>atoms: the XYZ coordinates of the atoms in atomic units</li> <li>charge: the total charge of the structure</li> <li>multiplicity: the spin multiplicity 2S+1 of the structure</li> <li>label: the position of the structure on the minimum energy pathway</li> </ul> <p>In the file "energies.json", there are two major fields: structures and reactions.</p> <p>In the field "structures", the keys are:</p> <ul> <li>id: the ID of structure (can be linked to XYZ coordinates in "structures.json")</li> <li>label: the position of the structure on the minimum energy pathway</li> <li>energy_dft: PBE-D3BJ/def2-SVP total energy in atomic units</li> <li>energy_hf: HF/cc-pVDZ total energy in atomic units</li> <li>energy_ccsd: CCSD/cc-pVDZ total energy in atomic units</li> <li>energy_ccsd_t: CCSD(T)/cc-pVDZ total energy in atomic units</li> <li>energy_gibbs_correction: PBE-D3BJ/def2-SVP Gibbs free energy correction in atomic units</li> </ul> <p>In the field "reactions", the keys are:</p> <ul> <li>id: the ID of the elementary step</li> <li>lhs: the structure IDs on the left-hand side of the reaction</li> <li>rhs: the structure IDs on the right-hand side of the reaction</li> <li>type: regular or barrierless</li> <li>barrierless: binary key to indicate whether the elementary step has a barrier</li> <li>ts: ID of the transition state structure</li> <li>reaction: the ID of the reaction to which the elementary step belongs</li> </ul> <p>Due to the nature of exploration, certain structures can be explored from multiple elementary steps. Therefore, duplicated structures are common in the reaction exploration. In "structures.json", we de-duplicated the structures and only list the unique ones. The coordinates (in bohr) and global attributes like spin multiplicity and charge are provided. </p> <p>In "energies.json", each "step" represents an elementary step. 1260 of the steps are barrierless, while 967 of the steps have a barrier. The structures keys cited in "lhs", "rhs", and "ts" are before de-duplication. The "id" in each structure key points to the unique, de-duplicated structure in "structures.json".</p> <p>The main catalytical pathways (figure 9) can be found in the dataset with the following elementary_step IDs:</p> <ul> <li>62066d2fb8e290f3afb607e2</li> <li>6206704db8e290f3afb607e3</li> <li>62067db7b8e290f3afb607e4</li> <li>620a6d49b8e290f3afb607e5</li> <li>620a6dbeb8e290f3afb607e6</li> <li>620a6e2fb8e290f3afb607e7</li> <li>620a6e78b8e290f3afb607e8</li> <li>620a7f01b8e290f3afb607e9</li> <li>620a7f54b8e290f3afb607ea</li> </ul>
Supplementary material 1 from: Menchetti M, Schifani E, Alicata A, Vila R (2023) Quantitative morphology and mtDNA reveal that Lasius maltaeus is not endemic to the Maltese Islands (Hymenoptera, Formicidae). Journal of Hymenoptera Research 95: 129-142. https://doi.org/10.3897/jhr.95.96365
The collecting data and voucher identifiers of the specimens
Supplementary material 1 from: Earley NG, Abram PK, Lalonde RG, Moffat CE (2023) Ovipositor characteristics differ between two parasitoids (Hymenoptera, Figitidae) of Drosophila suzukii (Diptera, Drosophilidae) in an adventive landscape. Journal of Hymenoptera Research 95: 13-30. https://doi.org/10.3897/jhr.95.89678
Raw data from figitid collections and ovipositor and tibia measurements
Supplementary material 1 from: Praz CJ, Bénon D (2023) Revision of the leachella group of Megachile subgenus Eutricharaea in the Western Palaearctic (Hymenoptera, Apoidea, Megachilidae): A renewed plea for DNA barcoding type material. Journal of Hymenoptera Research 95: 143-198. https://doi.org/10.3897/jhr.95.96796
List of examined specimens, with BOLD and genbank accession numbers
Supplementary material 1 from: Mikát M, Straka J (2023) Genetic evidence for parthenogenesis in the small carpenter bee Ceratina dallatoreana (Apidae, Ceratinini) in its native distribution range. Journal of Hymenoptera Research 95: 199-213. https://doi.org/10.3897/jhr.95.87165
Dataset
Supplementary material 2 from: Mikát M, Straka J (2023) Genetic evidence for parthenogenesis in the small carpenter bee Ceratina dallatoreana (Apidae, Ceratinini) in its native distribution range. Journal of Hymenoptera Research 95: 199-213. https://doi.org/10.3897/jhr.95.87165
Faunistic notes and microsatellite primers
Supplementary material 1 from: Rojas-Arias L, Gómez-Morales D, Stiegel S, Ospina-Torres R (2023) Niche modeling of bumble bee species (Hymenoptera, Apidae, Bombus) in Colombia reveals highly fragmented potential distribution for some species. Journal of Hymenoptera Research 95: 231-244. https://doi.org/10.3897/jhr.95.87752
Points used for the Niche modeling of Bumblebee species (Hymenoptera, Apidae, Bombus) in Colombia
Fig. 5 in EDITORIAL The Natal Museum and its journals: celebrating a century of publication, 1906-2005
Fig. 5. Ratio of the number of nomenclatural acts other than new descriptions to the number of new descriptions.
Supplementary material 1 from: Komonen A (2023) Nest characteristics and associates of Dolichovespula (Hymenoptera, Vespidae) in Central Finland. Journal of Hymenoptera Research 96: 45-55. https://doi.org/10.3897/jhr.96.98238
Nest characteristics
Codes and data related to the article: Renard (2023). Use of a National Flood Mark Database to Estimate Flood Hazard in the Distant Past. Hydrological Sciences Journal.
<p>This package contains R codes and data related to the article:</p> <p>B. Renard. 2023. Use of a National Flood Mark Database to Estimate Flood Hazard in the Distant Past<em>. Hydrological Sciences Journal</em>. DOI: <a href="https://doi.org/10.1080/02626667.2023.2212165">10.1080/02626667.2023.2212165</a></p> <p><strong>CONTENTS</strong></p> <p>R scripts used to set up models, analyse results and prepare figures.</p> <ul> <li>France207_MAX.RData contain monthly maxima at 207 stations. See references below for the original sources.</li> <li>Folder data_raw/ contain exports from the flood marks database. See references below for the original sources.</li> <li>funk.R is a library of functions used by other scripts.</li> <li>0_setUp.R prepares the runs to estimate the model for one component. Estimation is performed using the RSTooDs package (<a href="https://zenodo.org/record/5075760">https://zenodo.org/record/5075760</a>). This script extracts the data, specifies the probabilitic models and write STooDs configuration files.</li> <li>1_margin.R analyses the runs that have been performed and estimates marginal distributions at each station. Note that the runs set up in the previous point need to have been performed before using this script.</li> <li>2_probMap.R computes estimated flood probabilities over the whole 1705-2015 period. The previous script needs to have been run before.</li> <li>3_sensitivityAnalysis.R prepares configuration files for sensitivity analysis experiments.</li> <li>4_ZenodoRelease.R prepares the released data and probability maps. The previous scripts needs to have been run before.</li> <li>Scripts named fig_XXX.R create the figures shown in the article.</li> </ul> <p><strong>REFERENCES</strong><br> Streamflow series at stations: <a href="https://www.hydro.eaufrance.fr/">https://www.hydro.eaufrance.fr/</a><br> developed by the "Service central d’hydrométéorologie et d’appui à la prévision des inondations" (Schapi) from the Ministry of the Ecological Transition</p> <p>Flood marks database: <a href="https://www.reperesdecrues.developpement-durable.gouv.fr/">https://www.reperesdecrues.developpement-durable.gouv.fr/</a><br> developed by the flood forecasting network "Vigicrues" from the Ministry of the Ecological Transition</p> <p> </p>
Supplementary material 2 from: Barbosa DN, Melo GAR (2023) Revision of Bethylinae from Dominican amber, with description of a new genus (Hymenoptera, Bethylidae). Journal of Hymenoptera Research 96: 167-180. https://doi.org/10.3897/jhr.96.100862
Phylogenetic tree
Supplementary material 1 from: Barbosa DN, Melo GAR (2023) Revision of Bethylinae from Dominican amber, with description of a new genus (Hymenoptera, Bethylidae). Journal of Hymenoptera Research 96: 167-180. https://doi.org/10.3897/jhr.96.100862
Character matrix
Radiation sensitive MOSFETs irradiated with various positive gate biases (raw data from journal article)
<p>This upload contains raw data from the manuscript "Radiation sensitive MOSFETs irradiated with various positive gate biases". The manuscript was published in the Journal of Radiation Research and Applied Sciences, vol. 14, no. 1 (2021): 353-357; DOI: https://doi.org/10.1080/16878507.2021.1970921</p> <p>The upload consists of a .pdf file of the manuscript and .opj files with raw data related to the figures in the manuscript. </p> <p>This work was partly supported by the European Union’s Horizon 2020 research and innovation programme (Grant No. 857558) and the Ministry of Education, Science and Technology Development of the Republic of Serbia (Project No. 43011).</p>
Sensitivity and fading of irradiated RADFETs with different gate voltages (raw data from journal article)
<p>This upload contains raw data from the manuscript "Sensitivity and fading of irradiated RADFETs with different gate voltages". The manuscript was published in the Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 1029 (2022): 166473; DOI: https://doi.org/10.1016/j.nima.2022.166473</p> <p>The upload consists of a .pdf file of the manuscript and .opj files with raw data related to the figures in the manuscript. </p> <p>This work was partly supported by the European Union’s Horizon 2020 research and innovation programme (Grant No. 857558) and the Ministry of Education, Science and Technology Development of the Republic of Serbia (Project No. 43011).</p>
Commercial P-Channel Power VDMOSFET as X-ray Dosimeter (raw data from journal article)
<p>This upload contains raw data from the manuscript "Commercial P-Channel Power VDMOSFET as X-ray Dosimeter". The manuscript was published in Electronics, 11(6):918, 2022.; DOI: https://doi.org/10.3390/electronics11060918</p> <p>The upload consists of a .pdf file of the manuscript and .opj files with raw data related to the figures in the manuscript.</p> <p>This work was partly supported by the European Union’s Horizon 2020 research and innovation programme (Grant No. 857558) and the Ministry of Education, Science and Technology Development of the Republic of Serbia (Project No. 43011).</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.