Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Genome-wide localization of Smc1, Smc3 and CTCF in mouse B cells.
GEO Series GSE43594. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenomic Regulation of Human T-Cell Leukemia Virus by Chromatin-Insulator CTCF
GEO Series GSE172194. Homo sapiens; Human T-cell leukemia virus type I. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide histone mark and CTCF profiling of LSK cells with hyperactivated Notch1 and/or Tcf7 knock-out [ChIP-seq]
GEO Series GSE169117. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SMC1A, CTCF and MITF level on chromatin after knockdown of NIPBL in melanoma cell line
GEO Series GSE263452. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas
GEO Series GSE22884. Homo sapiens. 4 samples. Type: Methylation profiling by genome tiling array.
Dynamic CTCF occupancy during differentiation rewires cis-regulatory module interactions essential for development [Capture Hi-C]
GEO Series GSE131324. Homo sapiens. 4 samples. Type: Other.
CTCF ChIPseq of mouse uterus
GEO Series GSE227519. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [VI]
GEO Series GSE140570. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing.
CTCF binding polarity determines chromatin looping [4C]
GEO Series GSE72539. Mus musculus. 504 samples. Type: Other.
Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation
GEO Series GSE210817. Homo sapiens; Mus musculus. 571 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Three-dimensional chromatin reorganization during CD8+ T cell activation is mediated by TRIM28 [CUT&Tag CTCF]
GEO Series GSE277732. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF is dispensable for cell fate conversion but facilitates acute cellular responses [ATAC-seq]
GEO Series GSE142301. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
H3K27 and H3K9 Methylation Mask Potential CTCF Binding Sites to Maintain 3D Genome Integrity
GEO Series GSE293581. Mus musculus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping
GEO Series GSE120781. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [VIII]
GEO Series GSE140869. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Facultative CTCF sites moderate mammary super-enhancer activity and regulate juxtaposed gene in non-mammary cells [4C-seq]
GEO Series GSE97803. Mus musculus. 6 samples. Type: Other.
Cr(VI) Promotes Differential Binding of CTCF to its Cognate Sites
GEO Series GSE154387. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [ATAC-seq]
GEO Series GSE156095. Danio rerio. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation
GEO Series GSE288847. Mus musculus; Mus spretus. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [RNA-Seq]
GEO Series GSE269226. Mus musculus; Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.