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2,315 results for “Comparative analysis”
FIGURE 2. NHM 2008.618 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 2. NHM 2008.618, holotype of Brissalius vannoordenburgi gen. nov., sp. nov.: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 8. NHM 88.1.9.4 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 8. NHM 88.1.9.4, Metalia sternalis from Mauritius: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 7. NHM 1936.5.13 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 7. NHM 1936.5.13, denuded specimen (1 of 16) of Metalia sternalis from the Red Sea: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 6. NHM 1962.8.16.17 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 6. NHM 1962.8.16.17, Brissopsis persica from the Persian Gulf: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 4. NHM 1968.6.14.16 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 4. NHM 1968.6.14.16, Brissopsis luzonica from the Solomon Islands: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 2. NHM 2008.618 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 2. NHM 2008.618, holotype of Brissalius vannoordenburgi gen. nov., sp. nov.: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 1. NHM 2008.619 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 1. NHM 2008.619, paratype of Brissalius vannoordenburgi gen. nov., sp. nov.: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 5. ECH–261 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 5. ECH–261, paratype of Brissopsis persica from the Persian Gulf: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view; ECH–275, holotype of Brissopsis persica var. elevata: H, aboral view; I, sternal view; J, (right side) lateral view.
FIGURE 3. NHM 81.11.22.37 in A comparative analysis of the spatangoid echinoid genera Brissopsis and Metalia: a new genus and species of spatangoid (Echinodermata: Echinoidea: Brissop- sidae) from the Philippines and the reassignment of Brissopsis persica to Metalia
FIGURE 3. NHM 81.11.22.37, denuded test of Brissopsis luzonica from between northern Australia and Papua New Guinea: A, aboral view; B, oral view; C (left side) & D (right side), lateral views; E, anterior; F, posterior; G, sternal view.
FIGURE 8 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 8. Tree showing the phylogenetic relationships among Lepidopteran insects, constructed using (A) Bayesian inference (BI). (B) Maximum Likelihood method (ML). Bootstrap values (1000 repetitions) of the branches are indicated. Drosophila melanogaster (U37541.1) and Anopheles gambiae (L20934.1) were used as outgroups.
FIGURE 6 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 6. Alignment of overlapping region between atp8 and atp6 across Lepidoptera and other insects. The numbers on the right refer to intergenic nucleotides.
FIGURE 7 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 7. (A) Alignment of the intergenic spacer region between trnS2 (UCN) and nad1 of several Lepidopteran insects. The shaded 'ATACTAA' motif is conserved across the Lepidoptera order. (B) Features present in the A+T-rich region of A. suspecta. The sequence is shown in the reverse strand. The ATATG motif is shaded. The poly-T stretch is underlined while the poly-A stretch is double underlined. The single microsatellite T/A repeats sequence are indicated by dotted underlining.
FIGURE 4 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 4. The Relative Synonymous Codon Usage (RSCU) of the mitochondrial genome of five superfamilies in the Lepidoptera. Codon families are plotted on the X axis. Codons indicated above the bar are not present in the mitogenome.
FIGURE 2 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 2. Comparison of codon usage within the mitochondrial genome of members of the Lepidoptera. Lowercase letters (a, b, c, d and e) above species name represent the superfamily to which the species belongs (a: Geometroidea, b: Bombycoidea, c: Noctuoidea, d: Tortricoidea, e Hepialoidea:).
FIGURE 1 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 1. Map of the mitogenome of A. suspecta. The tRNA genes are labeled according to the IUPAC-IUB single-letter amino acids: cox1, cox2 and cox3 refer to the cytochrome c oxidase subunits; cob refers to cytochrome b; nad1-nad6 refer to NADH dehydrogenase components; rrnL and rrnS refer to ribosomal RNAs.
High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences
<p><strong>Background:</strong> <i>Xanthomonas</i> <i>translucens</i> pv. <i>graminis</i> (<i>Xtg</i>) is a major bacterial pathogen of economically important forage grasses, causing severe yield losses. So far, genomic resources for this pathovar consisted mostly of draft genome sequences, and only one complete genome sequence was available, preventing comprehensive comparative genomic analyses. Such comparative analyses are essential in understanding the mechanisms involved in the virulence of pathogens and to identify virulence factors involved in pathogenicity.</p><p><strong>Results:</strong> In this study, we produced high-quality, complete genome sequences of four strains of <i>Xtg</i>, complementing the recently obtained complete genome sequence of the <i>Xtg </i>pathotype strain. These genomic resources allowed for a comprehensive comparative analysis, which revealed a high genomic plasticity with many chromosomal rearrangements, although the strains were highly related, with 99.9 to 100% average nucleotide identity. A high number of transposases were exclusively found in <i>Xtg </i>and corresponded to 413 to 457 insertion/excision transposable elements per strain. These mobile genetic elements are likely to be involved in the observed genomic plasticity and may play an important role in the adaptation of <i>Xtg</i>. The pathovar was found to lack a type IV secretion system, and it possessed the smallest set of type III effectors in the species. However, three XopE and XopX family effectors were found, while in the other pathovars of the species two or less were present. Additional genes that were specific to the pathovar were identified, including a unique set of minor pilins of the type IV pilus, 17 TonB-dependent receptors (TBDRs), and 11 degradative enzymes. </p><p><strong>Conclusion:</strong> These results suggest a high adaptability of <i>Xtg</i>, conferred by the abundance of mobile genetic elements, which may have led to the loss of many features. Conserved features that were specific to <i>Xtg </i>were identified, and further investigation will help to determine genes that are essential to pathogenicity and host adaptation of <i>Xtg</i>.</p>
Comparative analysis of autofocus criteria in reconstructed images of individual plankton for digital in line holography - Supplementary Material
<p>Supplementary Material belonging to the manuscript entitled "Comparative analysis of autofocus criteria in reconstructed images of individual plankton for digital in line holography", by Moreno et al., submitted to the journal OPTIK.</p>
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches
<p>Generated draft and consensus reconstructions for the manuscript "Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches" (Hsieh, Tandon, Verbruggen, & Nikoloski).</p>
A comparative analysis of somatic mutations occurring at "common" loci and other loci with the TCGA somatic mutation dataset.
<p>A comparative analysis of somatic mutations occurring at "common" loci and other loci with the TCGA somatic mutation dataset.</p>
Fig. 5 in Corosolic acid content and SSR markers in Lagerstroemia speciosa (L.) Pers.: A comparative analysis among populations across the Southern Western Ghats of India
Fig. 5. Variation in percentage distribution of CRA (a) in different parts of L. speciosa (b) in all 12 populations of L. speciosa collected across a north–south geographical gradient in the Southern Western Ghats region of peninsular India.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.