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FIGURE 21. Parmotrema intonsum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 21. Parmotrema intonsum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Part of thallus with granular or cylindrical ciliate isidia and a mature apothecium with ± branched and ciliate outgrowths on margin (holotype); D: Part of thallus with ciliate phyllidia/laciniae and apothecia of various ages (Masson 974.0359); E: Gross morphology of thallus (holotype). Scale bars: A = 10 km; C = 5 mm; D = 4 mm; E = 10 mm.
FIGURE 18 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 18. Parmotrema cf. deflectens. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection site (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Ciliate sorediate lobes with marginal, linear interrupted to somewhat labriform soralia (Krog RE34/2 & Timdal); D: small marginal soralia tinged orange by skyrin, and fragile cortex cracking (Krog RE34/2 & Timdal). Scale bars: A = 10 km; C = 5 mm; D = 1 mm.
FIGURE 10 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 10. Comparison of the mean lengths (± SE) of the marginal cilia of 4 species of the P. subarnoldii group: P. subarnoldii (lectotype from Madagascar, 1 specimen from Rwanda), P. eleonomum (7 specimens from Réunion), P. brachyblepharum (8 specimens from Réunion), and P. udisilvestre (14 specimens from Réunion, 1 from Madagascar). Soralia of type A: marginal, linear or ± subcapitate or labriform; soralia of type B: submarginal, arising from pustule-like swellings, or forming from disintegration of the upper cortex.
FIGURE 6 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 6. Thin layer chromatograms in solvents A, B and C for eight undetermined ciliary pigments found in Parmotrema species. 1: Pink-violet pigment (= PV); 2: Pink pigment (= P1); 3: Pink pigment (= P2); 4: Blue-grey pigment (= BG); 5: Orange pigment (= O1); 6: Orange pigment (= O2); 7: Red pigment (= R1); 8: Red pigment (= R2). Control substances: atranorin (a) and norstictic acid (n).
FIGURE 3 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 3. Phylogeny of the Parmotrema species studied. Best ML tree resulted from a RaxML analysis of three loci (EF1-α, ITS, mtSSU) and 102 specimens. Punctelia toxodes was selected as the outgroup. Bootstrap values are represented above the branches, and thick branches have bootstrap support value ≥ 70. Results of the species delimitation analyses are summarized to the right of the terminal labels of the tree. The first column corresponds to the results of the Stacey analysis, while the second column corresponds to the results of the bPP analysis. Specimens attributed the same colour were reconstructed as part of the same putative species by the species delimitation analysis. Major medullary extrolites are also shown for each specimen.
FIGURE 26. Parmotrema mirum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 26. Parmotrema mirum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Two mature apothecia with well-developed and ciliate isidioid protuberances on the surface of the thalline exciple (Masson 974.4275); D: Isidia cylindrical to navicular, terete to ± flattened, mostly simple (Masson 974.4274); E: Gross morphology of thallus (holotype). Scale bars: A = 10 km; C, D = 3 mm; E = 10 mm.
FIGURE 20. Parmotrema eleonomum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 20. Parmotrema eleonomum. A: Distribution on Réunion (UTM 2×2 km grid system), lemon-yellow cell = specimens with molecular data, pale yellow cell with a cross = specimen without molecular data; B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C & D: Sorediate lobes with conspicuous long cilia, and soralia terminal ± subcapitate on marginal teeth or very short laciniae, or linear discontinuous on lobe margins (C: holotype, D: Masson 974.4997); E: Gross morphology of thallus (holotype). Scale bars: A = 10 km; C = 1 mm; D = 4 mm; E = 10 mm.
FIGURE 14. Parmotrema crinitum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 14. Parmotrema crinitum. A: P. crinitum s. str.: distribution on Réunion (UTM 2×2 km grid system), lemon-yellow cells = specimens with molecular data, pale yellow cells with a cross = specimens without molecular data but with mature apothecia; B: P. cf. crinitum: distribution on Réunion (UTM 2×2 km grid system), specimens without apothecia and molecular data; C: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18), hatched: P. crinitum s. str., dotted: only P. cf. crinitum; D: Gross morphology of thallus (Masson 974.3889); E: Isidiate lobes with coralloid and ciliate isidia (Masson 974.3889); F: Apothecia with ciliate isidia on margin and amphithecium (Masson 974.4477). Scale bars: A, B = 10 km; D = 10 mm; E = 4 mm; F = 4 mm.
FIGURE 17. Parmotrema crossotum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 17. Parmotrema crossotum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C & D: Isidiate lobes with irregularly cylindrical or ± flattened, simple to ± branched, highly ciliate isidia (C: holotype, D: Masson 974.4130); E: Gross morphology of thallus (holotype). Scale bars: A = 10 km; C, D = 4 mm; E = 10 mm.
FIGURE 2 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 2. Phylogenetic relationships of the two new species Parmotrema orarium and P. intonsum among selected representatives of parmelioid taxa, resulted from a RaxML analysis on three loci (ITS, nuLSU, mtSSU) and 71 specimens. Bootstrap values are represented near the branches when ≥ 70.
FIGURE 19. Parmotrema dilatatum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 19. Parmotrema dilatatum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection site (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Gross morphology of thallus (Masson 974.4112); D: Eciliate sorediate lobes, with young linear interrupted to somewhat labriform soralia, and older, ± subcapitate soralia on short ascending laciniae, finally ± coalescing on arbuscular rising structures (Masson 974.4112). Scale bars: A = 10 km; C = 10 mm; D = 4 mm.
FIGURE 1. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 1. A: Shade relief map of Réunion Island showing the location of the two volcanic massifs as well as the delimitation of the windward and leeward zones (adapted from Strasberg et al. 2005); B: Distribution of collection sites for the Parmotrema species studied (UTM 2×2 km grid system). Scale bar: 10 km.
FIGURE 8. Parmotrema austrosinense. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 8. Parmotrema austrosinense. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Gross morphology of thallus (Krog RE33/6 & Timdal); D: Sorediate lobes with marginal linear soralia, and lower surface with erhizinate whitish marginal zone (van den Boom 40807). Scale bars: A = 10 km; C = 10 mm; D = 5 mm.
FIGURE 4 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 4. Global tree (best scoring maximum likelihood tree) of Parmotrema based on the fungal ITS barcoding marker. Figure can be enlarged for a better reading of labels. Accessions in black are those retrieved from GenBank on June 2023. Those in red are those produced by the authors for this study. Bootstrap support is indicated on branch when ≥ 70%.
FIGURE 16. Parmotrema cristiferum. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 16. Parmotrema cristiferum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Gross morphology of thallus (Masson 974.4243); D: Sparingly ciliate sorediate lobes with marginal linear and submarginal ± capitate soralia (Masson 974.4631). Scale bars: A = 10 km; C = 10 mm; D = 4 mm.
FIGURE 12 in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 12. Parmotrema cf. clavuliferum. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Gross morphology of thallus (Masson 974.4027); D: Sorediate lobes with soralia mainly capitate at the apex of laciniae, and lower surface with ivory-white marginal zone (Masson 974.4027). Scale bars: A = 10 km; C = 10 mm; D = 5 mm.
FIGURE 22. Parmotrema mascarenense. A in Small island but great diversity: thirty six species of Parmotrema (Parmeliaceae, lichenized Ascomycota), including sixteen new species, on Réunion (Mascarenes), with additional data from the Western Indian Ocean
FIGURE 22. Parmotrema mascarenense. A: Distribution on Réunion (UTM 2×2 km grid system); B: Bioclimatic characteristics of collection sites (abbreviations and threshold values for thermotype and ombrotype horizons from Rivas-Martínez et al. 2011: 17–18); C: Part of thallus with laminal, ± coralloid and poorly ciliate isidia (holotype); D: Marginal cilia unevenly distributed, ± in clumps in lobe axils (Masson 974.3865); E: Gross morphology of thallus (holotype). Scale bars: A = 10 km; C = 5 mm; D = 4 mm; E = 10 mm.
Data Sets for: Trace elements in aerosol from Northwest Pacific marginal sea, Indian Ocean and South Pacific to Antarctica: Spatial variability and source identification
<p>This dataset includes the concentrations of trace elements in aerosols, along with location and time information, collected during a cruise from November 2021 to April 2022. The cruise covered the Pacific, the Indian Ocean, the Southern Ocean.</p>
FESOM2.1 model data used in the paper 'Atmospheric blocking slows ocean-driven melting of Greenland's largest glacier tongue'
<p>This data set includes the data necessary to reproduce the findings of McPherson et al., in revision, and recreate the figures in the manuscript.</p> <p>The output of model simulations with the global ocean sea ice model FESOM2.1 is provided. </p> <p>In particular, the data set includes:</p> <ol> <li>long term means of potential temperature, salinity, velocity and basal melt of the 79N Glacier averaged over 1970-2021 (<a target="_blank" rel="noopener noreferrer">fesom.mean.1970_2021.t.s.u.v.mat</a>)</li> <li>air-sea heat flux anomaly and anomalous wind field at 10m, taking mean winter (DJF) conditions between 2014 - 2016 from the mean of the years 2017 - 2020 (fesom.anom.fh.wind.mat)</li> <li>Atlantic Water temperature and velocity anomalies, taking mean winter (DJF) conditions between 2014 - 2016 from the mean of the years 2017 - 2020 (fesom.anom.t.u.v.mat)</li> </ol> <p>Each file includes information on the model grid (longitude and latitude of nodes, depths of the vertical layers, elements, nodal areas) needed for plotting the data.</p>
Data for replication of figures in "In situ imaging of a kleptoplastidic ciliate thin layer indicates traditional sampling underestimates oceanic mixotroph biomass", Barua et al. Communications Earth & Environment (2024).
<p>This dataset contains the relevant information needed to reproduce data plots in Figures 1-5 and Supplementary Figures 2-3 of the following manuscript.</p> <p><em><strong>In situ imaging of a kleptoplastidic ciliate thin layer indicates traditional sampling underestimates oceanic mixotroph biomass</strong></em></p> <p>Ranjoy Barua, Lisa Nyman, Buyu Guo, Matthew D. Johnson, Anvita U. Kerkar, Jiarong Hong, Adam T. Greer, John Lehrter, Malcolm McFarland, Bradley Penta, Aditya R. Nayak</p> <p>Communications Earth & Environment (2024).</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.