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The sharing of research raw data in journals indexed in the Cell & Tissue Engineering JCR category (2011-2015)
<p>The availability of research data sets is an important milestone since it can enhance the dynamics of research. This study aims to analyze the PubMed Central repository to determine the availability and type of raw data sets in Cell & Tissue Engineering journals indexed in the Journal Citation Reports. The number and types of files were registered. A search of the 21 journals from the Cell & Tissue Engineering category of the 2015 Journal Citation Reports was conducted. Information was collected from October to December 2016. A study of the supplementary material of the original articles published between 2011-2015 was performed through a search in the PubMed Central repository, which is the most used free full-text repository in biomedicine. Only articles with supplementary material were retrieved. The number and types of files were registered. In cases where a compressed file, such as a .zip or .rar file, was found, it was opened to check what kinds of files it contained.</p>
Data supplementing the article "Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles" F. Keck, V. Vasselon, F. Rimet, A. Bouchez, and M. Kahlert submitted to Molecular Ecology Resources journal
<p>These data supplement the article "Enhancing DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles" F. Keck, V. Vasselon, F. Rimet, A. Bouchez, and M. Kahlert submitted to Molecular Ecology Resources journal</p> <p>The directory contains the following files:</p> <p><strong>278 (139 x 2 replicates) samples fastq files.rar </strong>- contains the 278 fastq files provided by the sequencing platform with demultiplexed and contig DNA reads corresponding to the 139 samples with 2 sequencing replicates (A and B).</p> <p><strong>Counts_diatoms.xlsx </strong>- contains the morphological inventories with species list (Omnidia code) and valve abundances for the 139 samples.</p> <p><strong>Sites_list.xlsx </strong>- contains information regarding the 139 samples, including: River name, GPS coordinates, code used for molecular analysis and corresponding to sequencing fastq names.</p>
Raw data corresponding to Huestegge, S. M., Raettig, T., & Huestegge, L. (2019). "Are face-incongruent voices harder to process? Effects of face-voice gender incongruency on basic cognitive information processing." Journal: Experimental Psychology.
<p>Raw data file prior to subject-based aggregation. Variables and values are decribed within the file. For further reference and specifications please also refer to the original publication in the journal Experimental Psychology.</p>
Data set supporting Journal article: Siebicke, L., and Emad, A., "True eddy accumulation trace gas flux measurements: proof of concept", Atmos. Meas. Tech., 12, 1–28, 2019.
<p>This data set contains carbon dioxide trace gas flux measurements obtained by the true eddy accumulation technique as described in the research article:</p> <p>Siebicke, L., and Emad, A., "True eddy accumulation trace gas flux measurements: proof of concept", Atmos. Meas. Tech., 12, 1–28, 2019.</p> <p>It contains meteorological measurements (file "meteo.csv"), turbulent energy fluxes (file "energy_fluxes.csv"), three-diomensional wind vector measurements ("file wind.csv"), and carbon dioxide trace gas fluxes obtained by true eddy accumulation (file "co2_flux_TEA.csv") and eddy covariance using data from two separate anomemoters (files "co2_flux_EC_TEA_sonic.csv" and "co2_flux_EC_EC_sonic.csv").</p>
Data for journal article: "Improving medium-range forecasts of rain-on-snow events in pre-alpine areas"
<p>This dataset contains scripts and data in R software environment format used for the journal article "Improving medium-range forecasts of rain-on-snow events in pre-alpine areas" submitted to Water Resources Research.</p>
Replication Data for: Diversidade de Gênero nos Conselhos de Administração e sua Relação com Desempenho e Risco Financeiro nas Empresas Familiares. Published by Journal of Contemporary Administration, 23(6), 2019.
<p>This paper analyzes the influence of female participation on the performance and financial risk considering a sample of 218 public companies traded on B3 (Bovespa) from 2010 a 2016. The study also analyzes the influence of female participation on family control companies. Using a random effects methodology and family control dummy and percentage of female presence in boards of director, the study sought to analyze how theses variables and their interactions affect the financial performance of companies. Although the female representation has grown more than 50% in recent years, this share, however, in the board of directors of Brazilian companies is still a minority, close to 9% of the total surveyed. The ownership structure in the family firms is very relevant, with the percentage of 63%. The results suggest a positive relation between female participation and the Tobin-Q, used by value’s proxy, however, this relationship is weaker for firms with a family control. Another result found is that volatility, taken here as a risk’s proxy, is reduced in family run-business.</p>
Data supplementing the article "Diatom DNA metabarcoding for biomonitoring : strategies to avoid major taxonomical and bioinformatical biases limiting molecular indices capacities" K. Tapolczai, F. Keck, A. Bouchez, F. Rimet, M. Kahlert and V. Vasselon submitted to "Frontiers in Ecology and Evolution" journal
<p>These data supplement the article "Diatom DNA metabarcoding for biomonitoring : strategies to avoid major taxonomical and bioinformatical biases limiting molecular indices capacities" K. Tapolczai, F. Keck, A. Bouchez, F. Rimet, M. Kahlert and V. Vasselon submitted to "Frontiers in Ecology and Evolution" journal.</p> <p>The directory contains the following files:</p> <p><strong>464_samples_fastq_files_(mothur).rar </strong>- contains the 464 fastq files proceed together during the Mothur bioinformatics treatments to produce the OTUs and ISUs tables. As the contig and the demultiplexing steps were performed by the sequencing platform, there is 1 fastq file per sample. From this 464 samples OTU/ISU tables, only information regarding 76 samples were used in this study and are listed in the "<strong>76_samples_list_(mothur).xlsx" </strong>file<strong>.</strong></p> <p><strong>76_samples_list_(mothur).xlsx </strong>- contains the information regarding the 76 samples used to create the OTUs and ISUs tables presented in the paper.</p> <p><strong>76_samples_R1_R2_fastq_files(DADA2).rar - </strong>contains the raw demultiplexed fastq files (R1.fastq and R2.fastq) for each of the 76 samples used in this study to produce the ESVs table using the DADA2 bioinformatics pipeline.</p>
Data set of manuscript entitled "Spatiotemporal evolution of long- and short-term slow slip events in the Tokai region, central Japan, estimated from a very dense GNSS network during 2013–2016" submitted to the Journal of Geophysical Research: Solid Earth
<p>This data set was used for manuscript entitled “Spatiotemporal evolution of long- and short-term slow slip events in the Tokai region, central Japan, estimated from a very dense Global Navigation Satellite Systems (GNSS) network during 2013–2016” submitted to the Journal of Geophysical Research: Solid Earth. This data set includes 1 figure file, 1 station list and 26 numerical data files. Figure and numerical data are locations of GNSS stations and GNSS time series used in our submitted manuscript, respectively.</p> <p>Figure file maned “location_of_station.png” shows locations of GNSS stations used in our submitted manuscript. Blue dots denote a continuous GNSS network named GEONET was installed by the Geospatial Information Authority of Japan, and red triangles denote continuous GNSS stations constructed by the Japanese University Consortium for GPS Researchers (JUNCO) and operated by the Earthquake Research Institute at the University of Tokyo and allied universities.</p> <p>The coordinates of JUNCO station are collected in a file named “site_junco.bl”. Description of each column is as follows:</p> <p>1. Column 1: Longitude in degree.</p> <p>2. Column 2: Latitude in degree.</p> <p>3. Column 3: Station name.</p> <p>Numerical data is GNSS time series, corresponds to the corrected time series in our submitted manuscript, observed for the period between 1 January 2013 and 31 January 2016. A complete description of data set is found in our submitted manuscript. Description of each column is as follows:</p> <p> </p> <p>1. Column 1: Days since 31 December 2012.</p> <p>2. Column 2: East displacement in cm</p> <p>3. Column 3: North displacement in cm</p> <p>4. Column 4: Vertical displacement in cm</p> <p>5. Column 5: Standard deviation of east displacement in cm</p> <p>6. Column 6: Standard deviation of north displacement in cm</p> <p>7. Column 7: Standard deviation of vertical displacement in cm</p> <p> </p> <p>The numerical data in this data set includes only the 26 JUNCO stations data. Numerical data files are named by the regularity of the combination of the 4 characters station name and extension “.dat”.</p>
Study data for the journal article "Mental health of individuals at increased suicide risk after hospital discharge and initial findings on the usefulness of a suicide prevention project in Central Switzerland"
<p>Anonymized raw data of our cross-sectional survey study.</p> <p>id = study participant ID; se1-se10 = questions of the General Self-Efficacy Scale; sm1-sm5 = questions of the Self-Management Self-Test; hl1-hl12 = questions of the Health Literacy Questionnaire (Swiss version); prisms = question on the utilization of the PRISM-S technique; sp1-sp4 = questions on the utilization and perceived usefulness of the personal safety plan; app1-app7 = questions on the utilization and perceived usefulness of the SERO app; ensa = question on the participation in ensa courses; sex-income = sociodemographic questions</p>
UK consumer sentiment data for McMenamin et al., Institutions and Elections, Journalism, 2021.
<p>UK consumer sentiment data (STATA) for McMenamin et al., Institutions and Elections, Journalism, 2021.</p> <p>Code and other datasets for this article also available on Zenodo.</p>
German poll data for McMenamin et al., Institutions and Elections, Journalism, 2021.
<p>German poll data (STATA) for McMenamin et al., Journalism, 2021.</p> <p>Code and other datasets for this article also available on Zenodo.</p>
German newspaper data for McMenamin et al., Institutions and Elections, Journalism, 2021.
<p>German newspaper data (in STATA format) from McMenamin et al., Journalism, 2021.</p> <p>Code and other datasets also available on Zenodo.</p>
Floating-Gate MOS Transistor with Dynamic Biasing as a Radiation Sensor (raw data from journal article)
<p>This upload contains raw data from the manuscript "Floating-Gate MOS Transistor with Dynamic Biasing as a Radiation Sensor". The manuscript was published in Sensors 20, no. 11 (2020): 3329; DOI: https://doi.org/10.3390/s20113329</p> <p>The upload consists of .pdf file of the manuscript and .vsz files with raw data related to the figures in the manuscript. Each .vsz file is linked with raw data from the text files (.txt) and placed in a folder with the name and ordinal number of the figure in the publication. Additionally, a .pdf output file of the Veusz program (freely available) is placed in each folder.</p> <p>This work was supported in part by the European Union’s Horizon 2020 research and innovation programme (Grant No. 857558) and the Ministry of Education, Science and Technology Development of the Republic of Serbia (Project No. 43011).</p>
raw data for a manuscript submitted to Materials and Structures Journal
<p>raw data for a manuscript submitted to Materials and Structures Journal. Includes: coating thickness, jointly with economic and environmental calculations</p>
Factors Affecting African Journals Visibility Data Archive
<p>The file contains the status of African journals indexing on Google Scholar and Scopus. The journals are hosted in a major journal repository in Africa(Sabinet journal repository) and a major journal platform for African journals (African Journal Online, AJOL). There are also factors affecting the journal indexing on Google Scholar and Scopus. </p> <p>The factors affecting journal visibility highlighted include journals' open access status, journals’ presence on the International Standard Serial Number (ISSN), journals’ publisher membership of the Committee on Publication Ethics (COPE), journals’ hosting on the International Network for Advancing Science and Policy (INASP) journal online, geographic location of the journals’ publisher. </p>
Code and data for journal article "Maintenance of biodiversity in multitrophic metacommunities: dispersal mode matters"
<p>Code and data for journal article: "Maintenance of biodiversity in multitrophic metacommunities: dispersal mode matters" (Xiaozhou Ye & Shaopeng Wang, Journal of Animal Ecology, 2023).</p> <p>For explanation, refer to readme.txt or github (potentially more up to date): https://github.com/yxz321/fitness_dependent_dispersal</p>
Data for: Improvements in the Land and Crop Modeling over Flooded Rice Fields by Incorporating the Shallow Paddy Water (Submitting to the Journal of Advances in Modeling Earth Systems)
<p>We incorporated the shallow paddy surface water layer into the Noah-MP land surface model to improve its performance of surface heat fluxes over flooded rice paddies. Field measurements from two crop sites, i.e., SAITO (early rice) and SAGA (late rice), were used to initialize and evaluate the modified Noah-MP model (Maruyama, 2021). Additionally, we investigated the roles of some key parameters in the land and crop modeling. </p> <p>Note that, all numerical experiments in this study were conducted at the field scale using the offline version of Noah-MP (Niu et al., 2011) running within the High-Resolution Land Data Assimilation System (HRLDAS v3.9; Chen et al., 2007). Please refer to the official HRLDAS/Noah-MP unified Github repository (<a href="https://github.com/NCAR/hrldas">https://github.com/NCAR/hrldas-release</a>) for the original model codes.</p> <p>The related model code modifications and model outputs were included in this dataset. Surface observations for the nearest AMeDAS or meteorological observatory stations were obtained from the Japan Meteorological Agency website (<a href="https://www.jma.go.jp/jma/indexe.html">https://www.jma.go.jp/jma/indexe.html</a>), and were also provided in this dataset.</p> <p> </p> <p>References</p> <p>Chen, F., Manning, K. W., LeMone, M. A., Trier, S. B., Alfieri, J. G., Roberts, R. D., et al. (2007). Description and evaluation of the characteristics of the NCAR high‐resolution land data assimilation system. <em>Journal of Applied Meteorology and Climatology</em>, 46(6), 694-713. <a href="https://doi.org/10.1175/JAM2463.1">https://doi.org/10.1175/JAM2463.1</a></p> <p>Maruyama, A. (2021). Data for: Coupling land surface and crop models to estimate the effects of changes in the growing season on energy balance and water use of rice paddies (version 2) [Data set]. Mendeley Data. <a href="https://doi.org/10.17632/tv23z95r5g.2">https://doi.org/10.17632/tv23z95r5g.2</a></p> <p>Niu, G., Yang, Z., Mitchell, K., Chen, F., Ek, M., Barlage, M., et al. (2011). The community Noah land surface model with multiparameterization options (Noah‐MP): 1. Model description and evaluation with local‐scale measurements. <em>Journal of Geophysical Research, </em>116, D12109. <a href="https://doi.org/10.1029/2010JD015139">https://doi.org/10.1029/2010JD015139</a></p>
Supplementary data for the study "Unveiling the rheological control of magmatic systems on volcano deformation: the interplay of poroviscoelastic magma-mush and thermo-viscoelastic crust ", submitted in the Journal of Geophysical Research: Solid Earth
<p>Supplementary data for the study "Unveiling the rheological control of magmatic systems on volcano deformation: the interplay of poroviscoelastic magma-mush and thermo-viscoelastic crust ", submitted in the Journal of Geophysical Research: Solid Earth</p>
Data from: Thermal springs and active fault network of the central Colca River basin, Western Cordillera, Peru, published in Journal of Volcanology and Geothermal Research
<p>We used hydrogeochemical analysis of 35 water samples from springs and geysers, together with isotopic (δ<sup>18</sup>O and δD) analysis, chemical and mineral studies of precipitates collected in the field around these outflows, and field observations to study the thermal system of the Colca River basin in S Peru. We aimed to determine the geochemistry of thermal waters, identify fluid sources and their origin, estimate reservoir temperature, and discuss the regional tectonic and volcanic framework. Our findings presented in Tyc et al. (2022; https://doi.org/10.1016/j.jvolgeores.2022.107513) corroborate a heterogeneous and complex geothermal system in the central region of the Colca River basin. This system exhibits contrasting hydrogeochemical and physical characteristics, variable isotope compositions, distinct reservoir temperatures, and associated precipitates near thermal springs. The control of water chemistry in this area is closely linked to the activity of the Ampato-Sabancaya magmatic chamber and the presence of tectonic structures, which enable intricate interactions between meteoric waters, magmatic fluids, and gases.</p> <p>Here, we present datasets used in the article (Tyc et al., 2022; https://doi.org/10.1016/j.jvolgeores.2022.107513), including:</p> <p>- Physicochemical characteristics of water samples collected by authors in the field in September 2012 and August–September 2017 (Table 1)</p> <p>- Chemical and isotopic composition of water samples collected by authors in the field in September 2012 and August–September 2017 (Table 2) and those monitored by INGEMMET in years 2013-2018 (Table 3)</p> <p>- Chosen molecular ratios discussed in Tyc et al., 2022 (Table 4)</p> <p>- Calculated reservoir temperature with the use of different Na/K geothermometers (Table 5)</p> <p>- Mineral phases in efflorescences precipitating at the water sampling sites (Table 6).</p> <p>Thirty-five sets of water samples were collected in the field in September 2012 and August–September 2017 using polyethylene bottles of high density (Table 1). Consequently, these were analyzed in the Water Analysis Laboratory at the University of Silesia in Katowice (Poland; Table 2). Water temperatures, pH, and electrical conductivity were measured in the field using portable pH meter CP-315 and conductivity meter CC-315, both with temperature sensors, with an accuracy of ±0.1 °C, ±0.01 pH, and ± 0.1% (up to 19.999 mS/cm) or ± 0.25% (above 20.00 mS/cm), respectively. Discharge of springs was estimated if possible (Table 1). Both cations and anions were analyzed by ion chromatography using Methron 850 Professional Ion Chromatograph with separate Metrosept C4–150 and A-supp 7–250 columns for cations and anions, respectively (Tables 2 and 4). Analysis of water analyses collected by INGEMMET in years 2013-2018 was performed at the INGEMMET Chemical Laboratory in Lima with the use of ion chromatography (Dionex ICS 5000) for the determination of anions and inductively coupled plasma optical emission spectrometry (ICP-OES) – VARIAN for cations (Table 3). Isotopic analyses (δ<sup>2</sup>H, δ<sup>18</sup>O) of 17 water samples collected in 2017 were performed at the Stable Isotope Laboratory Institute of Geological Sciences Polish Academy of Sciences (Table 2). The δ<sup>2</sup>H values of studied H<sub>2</sub>O were measured using the H-Device peripheral coupled to MAT 253 IRMS (Thermo Scientific) in a dual inlet system. For the determination of δ<sup>18</sup>O in H<sub>2</sub>O, an equilibration technique was used. The analysis used the GasBench II peripheral device (Thermo Scientific) coupled to MAT 253 IRMS with a continuous He flow. The AquaChem 4.0.284 software was used to evaluate the water samples' geochemical properties and calculate reservoir temperature for thermal waters (Table 5). Precipitates found at the water sampling sites were collected separately into plastic bags with strings and sealed boxes. These samples were subsequently analyzed at the Institute of Earth Sciences, University of Silesia in Katowice. The qualitative chemical composition and mineral characteristics were examined using a Philips XL 30 ESEM/TMP scanning electron microscope coupled with an energy-dispersive spectrometer (EDS; EDAX type Sapphire). The phase composition of the precipitates was determined through X-ray diffraction (XRD) using a Philips PW 3710 diffractometer. The XRD data were analyzed and interpreted using the X'Pert HIGHScore Plus software (Table 6).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.